mRNA_L-elsbetiae_contig19539.5811.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19539.5811.1
Unique NamemRNA_L-elsbetiae_contig19539.5811.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19539.5811.1 vs. uniprot
Match: A0A6H5K5B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B9_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.420e-38
Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = -1 
Query:    1 AFSRIAKLTYGVEITGIYDPSNPEHVKRRPTHPKKDAAGRDRIDIFSTHIERGACMPSDGTCPRQCYRPLLLDQTRITFRILASHSKNIKFPDKDATFPLGEITV 315
            AFSRIAKLTYGV+ T IYD SN EHVKRR + P  D+AG++ ID FSTHI+RGA +PSDGTC R+CY PL  +QT ++F+ILA H  +I+FPD D+TFPLGE+TV
Sbjct:  447 AFSRIAKLTYGVKSTCIYDSSNAEHVKRRSSPPIWDSAGKEVIDAFSTHIKRGAYVPSDGTCTRRCYGPLRPNQTTVSFQILACHHTDIEFPDTDSTFPLGEVTV 551
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BLAST of mRNA_L-elsbetiae_contig19539.5811.1 vs. uniprot
Match: A0A8B8D075_CRAVI (heat shock 70 kDa protein 12A-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8D075_CRAVI)

HSP 1 Score: 62.0 bits (149), Expect = 5.540e-9
Identity = 36/101 (35.64%), Postives = 53/101 (52.48%), Query Frame = -1 
Query:    7 SRIAKLTYGVEITGIYDPSNPEHVKRRPTHPKKDAAGRDRIDIFSTHIERGACMPSDGTCPRQCYRPLLLDQTRITFRILASHSKNIKFPDKDATFPLGEI 309
            +RIAK TYG+E + I+DP+  +H +RR    KKD   R    IFS H+E G  +  +       Y P+  DQ +I+F +  S S N  + D      LG++
Sbjct:  486 ARIAKYTYGIETSEIFDPN--KHEQRRKERDKKDGKYRCH-GIFSRHVEAGTILYRNEEQREHIYFPIYADQKKISFPVYISESGNPMYTDDPGCKRLGQL 583
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BLAST of mRNA_L-elsbetiae_contig19539.5811.1 vs. uniprot
Match: A0A8B8DKY1_CRAVI (heat shock 70 kDa protein 12A-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DKY1_CRAVI)

HSP 1 Score: 54.7 bits (130), Expect = 2.050e-6
Identity = 35/102 (34.31%), Postives = 53/102 (51.96%), Query Frame = -1 
Query:    7 SRIAKLTYGVEITGIYDPSNPEHVKRRPTHPKKDAAGRDRIDIFSTHIERGACMPSDGTCPRQCYRPLLLDQTRITFRILASH-SKNIKFPDKDATFPLGEI 309
            +RIAK TYG+E + I+DP+   H +RR    K+D   R    IFS H+E G  +  +       Y P+  DQ +I+F +  S  S N  + D+     LG++
Sbjct:  461 ARIAKYTYGIETSEIFDPNI--HEQRRKERDKRDGKYRCH-GIFSRHVEAGTILYRNEEQREHIYFPIYADQKKISFPVYISEKSGNPTYTDEPGCKWLGQL 559
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19539.5811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K5B9_9PHAE1.420e-3865.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8B8D075_CRAVI5.540e-935.64heat shock 70 kDa protein 12A-like n=1 Tax=Crassos... [more]
A0A8B8DKY1_CRAVI2.050e-634.31heat shock 70 kDa protein 12A-like n=1 Tax=Crassos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19539contigL-elsbetiae_contig19539:2365..2680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size316
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815810.5126379-CDS-L-elsbetiae_contig19539:2364..26791622815810.5126379-CDS-L-elsbetiae_contig19539:2364..2679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19539 2365..2679 +
1691683117.6911428-CDS-L-elsbetiae_contig19539:2364..26791691683117.6911428-CDS-L-elsbetiae_contig19539:2364..2679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19539 2365..2679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19539.5811.1prot_L-elsbetiae_contig19539.5811.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19539 2365..2679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19539.5811.1

>prot_L-elsbetiae_contig19539.5811.1 ID=prot_L-elsbetiae_contig19539.5811.1|Name=mRNA_L-elsbetiae_contig19539.5811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
HSYFTQRESSILVRKLDVLAVTGQYPEGYSGLVQEQRTIALPWTRAVGRH
ARPSLDVGRENVDPISAGCILLGVRRTTLHVLGVAGVIYARNLDAVGEFG
YPREC
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mRNA from alignment at L-elsbetiae_contig19539:2365..2680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19539.5811.1 ID=mRNA_L-elsbetiae_contig19539.5811.1|Name=mRNA_L-elsbetiae_contig19539.5811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=316bp|location=Sequence derived from alignment at L-elsbetiae_contig19539:2365..2680+ (Laminarionema elsbetiae ELsaHSoW15)
CACAGTTATTTCACCCAGAGGGAAAGTAGCATCCTTGTCAGGAAACTTGA
TGTTCTTGCTGTGACTGGCCAGTATCCGGAAGGTTATTCTGGTCTGGTCC
AGGAGCAAAGGACGATAGCACTGCCTTGGACACGTGCCGTCGGAAGGCAT
GCACGCCCCTCGCTCGATGTGGGTCGAGAAAATGTCGATCCTATCTCTGC
CGGCTGCATCCTTCTTGGGGTGCGTCGGACGACGCTTCACGTGCTCGGGG
TTGCTGGGGTCATATATGCCCGTAATCTCGACGCCGTAGGTGAGTTTGGC
TATCCGCGAGAATGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19539:2365..2680+

>mRNA_L-elsbetiae_contig19539.5811.1 ID=mRNA_L-elsbetiae_contig19539.5811.1|Name=mRNA_L-elsbetiae_contig19539.5811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig19539:2365..2680+ (Laminarionema elsbetiae ELsaHSoW15)
CACAGTTATTTCACCCAGAGGGAAAGTAGCATCCTTGTCAGGAAACTTGA
TGTTCTTGCTGTGACTGGCCAGTATCCGGAAGGTTATTCTGGTCTGGTCC
AGGAGCAAAGGACGATAGCACTGCCTTGGACACGTGCCGTCGGAAGGCAT
GCACGCCCCTCGCTCGATGTGGGTCGAGAAAATGTCGATCCTATCTCTGC
CGGCTGCATCCTTCTTGGGGTGCGTCGGACGACGCTTCACGTGCTCGGGG
TTGCTGGGGTCATATATGCCCGTAATCTCGACGCCGTAGGTGAGTTTGGC
TATCCGCGAGAATGCCACAGTTATTTCACCCAGAGGGAAAGTAGCATCCT
TGTCAGGAAACTTGATGTTCTTGCTGTGACTGGCCAGTATCCGGAAGGTT
ATTCTGGTCTGGTCCAGGAGCAAAGGACGATAGCACTGCCTTGGACACGT
GCCGTCGGAAGGCATGCACGCCCCTCGCTCGATGTGGGTCGAGAAAATGT
CGATCCTATCTCTGCCGGCTGCATCCTTCTTGGGGTGCGTCGGACGACGC
TTCACGTGCTCGGGGTTGCTGGGGTCATATATGCCCGTAATCTCGACGCC
GTAGGTGAGTTTGGCTATCCGCGAGAATGC
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