mRNA_L-elsbetiae_contig19536.5810.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig19536.5810.1 vs. uniprot
Match: A0A6H5JDI2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI2_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.000e-21 Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 3 Query: 327 AARGLSRSELAMLPEQIGNGSGPMDQCSICMEDMASTETIVRLPACLHTFHRDCIRSWLSHKACCPLDQSTVSV 548 A +GLS SE+ +LP+Q GNGSGP+DQC +CMEDM E I RLPACLHTFH CI WL K CCP+D+ VSV Sbjct: 791 AKKGLSPSEIGLLPQQTGNGSGPVDQCCVCMEDMKPREKITRLPACLHTFHSKCISKWLKEKPCCPIDKVAVSV 864
BLAST of mRNA_L-elsbetiae_contig19536.5810.1 vs. uniprot
Match: UPI000F61552B (E3 ubiquitin-protein ligase ATL59-like n=1 Tax=Coffea eugenioides TaxID=49369 RepID=UPI000F61552B) HSP 1 Score: 65.1 bits (157), Expect = 8.100e-9 Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 3 Query: 321 RDAARGLSRSELAMLPEQIGNGSGPMD--QCSICMEDMASTETIVRLPACLHTFHRDCIRSWLSHKACCPLDQSTVSVTAQ---ETSTVQLWLGDI 593 R + GL + MLP + S + QCS+C+ D + E + ++PAC HTFHRDCI SWLS CPL + ++ V+A+ E +QL DI Sbjct: 18 RAESGGLKKEVREMLPVIVFKESFSVKDTQCSVCLGDYQAEERLQQIPACGHTFHRDCIDSWLSTHTTCPLCRQSLLVSAKASIEAPDIQLASHDI 113
BLAST of mRNA_L-elsbetiae_contig19536.5810.1 vs. uniprot
Match: A0A068USW4_COFCA (RING-type domain-containing protein n=3 Tax=Coffea TaxID=13442 RepID=A0A068USW4_COFCA) HSP 1 Score: 64.7 bits (156), Expect = 4.000e-8 Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 3 Query: 336 GLSRSELAMLPEQIGNGSGPMD--QCSICMEDMASTETIVRLPACLHTFHRDCIRSWLSHKACCPLDQSTVSVTAQ---ETSTVQLWLGDIYVT*HLSVVYELGWPESSLAVAGRNSP 674 GL + MLP + S + QCS+C+ D + E + ++PAC HTFHRDCI SWLS CPL + ++ V+A+ E +QL D+ S++AV G SP Sbjct: 111 GLKKEVREMLPVIVFKESFSVKDTQCSVCLGDYQAEERLQQIPACGHTFHRDCIDSWLSTHTTCPLCRQSLLVSAKASIEAPDMQLASHDV---------------SSNIAVGGELSP 213
BLAST of mRNA_L-elsbetiae_contig19536.5810.1 vs. uniprot
Match: UPI000B76C4B0 (E3 ubiquitin-protein ligase ATL23-like n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B76C4B0) HSP 1 Score: 62.0 bits (149), Expect = 6.970e-8 Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 3 Query: 303 VANMGRRDAARGLSRSELAMLPEQIGNGSGPMDQCSICMEDMASTETIVRLPACLHTFHRDCIRSWLSHKACCPL 527 +A+ ++ A +GLS SEL MLP+ G C++C+ED+ S + + +P C H FH +C +WLS + CP+ Sbjct: 69 IASPVKQPAEKGLSASELEMLPKITGRELVMGTDCAVCLEDVESEQPVRLVPGCNHGFHLECADTWLSKHSVCPV 143
BLAST of mRNA_L-elsbetiae_contig19536.5810.1 vs. uniprot
Match: A0A6G1FCA6_9ORYZ (RING-type domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1FCA6_9ORYZ) HSP 1 Score: 62.4 bits (150), Expect = 9.090e-8 Identity = 36/85 (42.35%), Postives = 45/85 (52.94%), Query Frame = 3 Query: 324 DAARGLSRSE--------LAMLPEQI-------GNGS--GPMDQCSICMEDMASTETIVRLPACLHTFHRDCIRSWLSHKACCPL 527 DAARG+SR +A LP + G GS G C++C+ED+ ET+ RLPAC H FH+DCI WL CPL Sbjct: 76 DAARGVSRCACRLVGAALIATLPAYVYEGPAYGGGGSKHGGSVLCAVCLEDVQRGETVRRLPACCHLFHKDCIDMWLHSHTTCPL 160
BLAST of mRNA_L-elsbetiae_contig19536.5810.1 vs. uniprot
Match: A0A7I8LI50_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LI50_SPIIN) HSP 1 Score: 61.2 bits (147), Expect = 1.100e-7 Identity = 33/103 (32.04%), Postives = 52/103 (50.49%), Query Frame = 3 Query: 306 ANMGRRDAARGLSRSELAMLP------EQIGNGSGPMDQCSICMEDMASTETIVRLPACLHTFHRDCIRSWLSHKACCPLDQSTVSVTAQETSTV----QLWL 584 A+ G RGLS+ +L LP + G G D C+IC+E + LP C H+FH C+ SWL + CP+ +S V+ ++ S++ Q+W+ Sbjct: 37 AHGGCSCGGRGLSKEDLETLPCYDFEGGEKGGGGAAADDCAICLETFQDGDRCRLLPVCRHSFHAQCVDSWLLKSSMCPICRSNVTGGSRRLSSMDAEGQIWV 139
BLAST of mRNA_L-elsbetiae_contig19536.5810.1 vs. uniprot
Match: A0A835KP40_9POAL (RING-type domain-containing protein n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835KP40_9POAL) HSP 1 Score: 59.7 bits (143), Expect = 4.780e-7 Identity = 27/87 (31.03%), Postives = 48/87 (55.17%), Query Frame = 3 Query: 324 DAARGLSRSELAMLP--EQIGNGSGPMDQCSICMEDMASTETIVRLPACLHTFHRDCIRSWLSHKACCPLDQSTVSVTAQETSTVQL 578 ++ GL S +A LP + G D+CS+C+ ++ + ET+ +LP C H FH CI +WL CP+ ++ V+ ++V++ Sbjct: 72 ESVLGLGASAIASLPVYKYKEKKGGASDECSVCLGEVKTKETVKQLPVCSHLFHEGCIDAWLRSHRTCPVCRTAVNAATAVATSVEV 158
BLAST of mRNA_L-elsbetiae_contig19536.5810.1 vs. uniprot
Match: A0A0E0CIJ6_9ORYZ (RING-type domain-containing protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0CIJ6_9ORYZ) HSP 1 Score: 60.8 bits (146), Expect = 5.360e-7 Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 3 Query: 366 PEQIGNGS--GPMDQCSICMEDMASTETIVRLPACLHTFHRDCIRSWLSHKACCPL 527 P + G GS G C++C+ED+A ET+ RLPAC H FHRDC+ WL CPL Sbjct: 130 PAEGGGGSKHGGSVLCAVCLEDVARGETVRRLPACGHLFHRDCVDMWLHSHTTCPL 185
BLAST of mRNA_L-elsbetiae_contig19536.5810.1 vs. uniprot
Match: UPI001ADB7A18 (NEP1-interacting protein-like 1 n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADB7A18) HSP 1 Score: 60.8 bits (146), Expect = 7.520e-7 Identity = 36/92 (39.13%), Postives = 44/92 (47.83%), Query Frame = 3 Query: 315 GRRDAARGLSRSELAMLP------EQIG----NGSGPMDQCSICMEDMASTETIVRLPACLHTFHRDCIRSWLSHKACCPLDQSTVSVTAQE 560 G AA G+ +A LP EQ G G CS+C++D + E RLP C HTFH CI SWL A CPL + TV A + Sbjct: 165 GAAAAATGMPADAIAALPVTTFTAEQTAAGACGGGGDRAGCSVCLQDFEAGEEARRLPECGHTFHLQCIDSWLLRHASCPLCRRTVVAAAAD 256
BLAST of mRNA_L-elsbetiae_contig19536.5810.1 vs. uniprot
Match: A0A6A6LBN7_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LBN7_HEVBR) HSP 1 Score: 61.6 bits (148), Expect = 9.430e-7 Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 3 Query: 318 RRDAARGLSRSELAMLPEQIGNGSGPMDQCSICMEDMASTETIVRLPACLHTFHRDCIRSWLSHKACCPL 527 ++ A +GLS SEL MLP+ G +C++C+ED+ S + + +P C H FH +C +WLS + CP+ Sbjct: 27 KQPAEKGLSASELEMLPKITGRELVMGTECAVCLEDIESEQPVRLVPGCNHGFHLECADAWLSKHSVCPV 96 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19536.5810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig19536.5810.1 >prot_L-elsbetiae_contig19536.5810.1 ID=prot_L-elsbetiae_contig19536.5810.1|Name=mRNA_L-elsbetiae_contig19536.5810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp MNDDERSTTWERPADPAAPPLPLPPGWRTQTTSSGETYYINDDERSTTWEback to top mRNA from alignment at L-elsbetiae_contig19536:157..2771+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig19536.5810.1 ID=mRNA_L-elsbetiae_contig19536.5810.1|Name=mRNA_L-elsbetiae_contig19536.5810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2615bp|location=Sequence derived from alignment at L-elsbetiae_contig19536:157..2771+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig19536:157..2771+ >mRNA_L-elsbetiae_contig19536.5810.1 ID=mRNA_L-elsbetiae_contig19536.5810.1|Name=mRNA_L-elsbetiae_contig19536.5810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig19536:157..2771+ (Laminarionema elsbetiae ELsaHSoW15)back to top |