mRNA_L-elsbetiae_contig19522.5807.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19522.5807.1
Unique NamemRNA_L-elsbetiae_contig19522.5807.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19522.5807.1 vs. uniprot
Match: D8LF39_ECTSI (Putative Translation Initiation Inhibitor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF39_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.240e-34
Identity = 63/73 (86.30%), Postives = 66/73 (90.41%), Query Frame = 1
Query:   13 AAAGDLDRVRLVKITGFVHSADGFAGQSLVLNGASDLFMEVFGRENGAHARSAVGVNTLPLGVCVEIEAIVEV 231
            AAAGDLD++RLVKITGFV SADGF GQS VLNGASDL +EVFGRE GAHARSAVGVN LPLGVCVEIEAI EV
Sbjct:  126 AAAGDLDKIRLVKITGFVRSADGFTGQSAVLNGASDLLLEVFGREKGAHARSAVGVNALPLGVCVEIEAIAEV 198          
BLAST of mRNA_L-elsbetiae_contig19522.5807.1 vs. uniprot
Match: A0A7S3M7I1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7I1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.640e-22
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   13 AAAGDLDRVR-LVKITGFVHSADGFAGQSLVLNGASDLFMEVFGRENGAHARSAVGVNTLPLGVCVEIEAIVEV 231
            +A GDLD+V+ +VKITGFV+SA  F  Q  VLNG SDL  E+FG E G HARSA+GVN LPLGV VEIEAI+EV
Sbjct:  112 SAVGDLDKVKKIVKITGFVNSASDFTNQPAVLNGCSDLLGEIFGVEIGRHARSALGVNVLPLGVAVEIEAIIEV 185          
BLAST of mRNA_L-elsbetiae_contig19522.5807.1 vs. uniprot
Match: A0A6H5KXY4_9PHAE (YjgF_endoribonc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXY4_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.150e-22
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:   22 GDLDRV-RLVKITGFVHSADGFAGQSLVLNGASDLFMEVFGRENGAHARSAVGVNTLPLGVCVEIEAIVEVGPSG 243
            GDLDRV R+VK+ GFV+  DGFAGQ  V+NGASDLF EVFG E G H+RSAVG N LP+ V VEIEAIVE    G
Sbjct:  100 GDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFG-ERGVHSRSAVGTNALPMNVPVEIEAIVEFDDGG 173          
BLAST of mRNA_L-elsbetiae_contig19522.5807.1 vs. uniprot
Match: A0A536EQF5_9CHLR (RidA family protein n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536EQF5_9CHLR)

HSP 1 Score: 91.3 bits (225), Expect = 1.300e-21
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   13 AAAGDLDRVR-LVKITGFVHSADGFAGQSLVLNGASDLFMEVFGRENGAHARSAVGVNTLPLGVCVEIEAIVEV 231
            AA G LDRVR +VK+TGFV SA+ F  QS V+NGASDL ++VFG E G HAR+AVGV  LPLG  VE+EA++E+
Sbjct:   78 AALGSLDRVRGVVKLTGFVSSAESFTDQSAVVNGASDLVVDVFGAERGTHARAAVGVAQLPLGAAVELEAVLEI 151          
BLAST of mRNA_L-elsbetiae_contig19522.5807.1 vs. uniprot
Match: A0A7S3U393_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U393_9SPIT)

HSP 1 Score: 90.1 bits (222), Expect = 2.070e-21
Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:   22 GDLDR-VRLVKITGFVHSADGFAGQSLVLNGASDLFMEVFGRENGAHARSAVGVNTLPLGVCVEIEAIVEVGPSG 243
            GDLDR VR+VKI GFV+ AD F  Q  V+NG S+L  ++FG+E GAHARSAVG N+LP  V VEIE I EV PSG
Sbjct:   55 GDLDRIVRIVKIVGFVNCADDFTQQPEVINGCSNLLGDIFGQERGAHARSAVGTNSLPRNVPVEIEMIAEVAPSG 129          
BLAST of mRNA_L-elsbetiae_contig19522.5807.1 vs. uniprot
Match: A0A2W6ACU6_9BACT (YjgF_endoribonc domain-containing protein n=1 Tax=Candidatus Dormibacter sp. RRmetagenome_bin12 TaxID=2599630 RepID=A0A2W6ACU6_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 2.470e-21
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   13 AAAGDLDRVR-LVKITGFVHSADGFAGQSLVLNGASDLFMEVFGRENGAHARSAVGVNTLPLGVCVEIEAIVEV 231
            AA G +DRV  +V++TGFV SA GFAGQ  V+NGASDLF+E+FG E G HARSAVGV  LPLG  +EIEAI EV
Sbjct:   77 AALGSVDRVGGVVRVTGFVRSAPGFAGQPAVINGASDLFVELFG-ERGRHARSAVGVGELPLGAALEIEAIFEV 149          
BLAST of mRNA_L-elsbetiae_contig19522.5807.1 vs. uniprot
Match: A0A2R5GI79_9STRA (Protein TCP17 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI79_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.700e-21
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   13 AAAGDLDRV-RLVKITGFVHSADGFAGQSLVLNGASDLFMEVFGRENGAHARSAVGVNTLPLGVCVEIEAIVEV 231
            A  GDLDRV R+VK+ GFV+ ADGFA Q  V+NGASDLF EV G E G HARSAVG N+LPL + VE+EAIVE+
Sbjct:  109 AELGDLDRVARVVKVVGFVNCADGFAQQPQVINGASDLFAEVLG-ERGLHARSAVGTNSLPLNIPVEVEAIVEI 181          
BLAST of mRNA_L-elsbetiae_contig19522.5807.1 vs. uniprot
Match: A0A1M7RRP4_9RHOB (Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family n=1 Tax=Oceanicella actignis TaxID=1189325 RepID=A0A1M7RRP4_9RHOB)

HSP 1 Score: 90.5 bits (223), Expect = 2.730e-21
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    7 QTAAAGDLDRV-RLVKITGFVHSADGFAGQSLVLNGASDLFMEVFGRENGAHARSAVGVNTLPLGVCVEIEAIVEV 231
            +TA  GDLDRV R+VK+TG+V++A  F    +V+NGASDL  EVFG E GAHAR+AVGV +LPLGV VE+E + E+
Sbjct:   79 KTACGGDLDRVTRVVKLTGYVNAAPDFENHPIVMNGASDLMAEVFGPEIGAHARAAVGVPSLPLGVAVEVEGVFEI 154          
BLAST of mRNA_L-elsbetiae_contig19522.5807.1 vs. uniprot
Match: A0A8K1C318_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C318_PYTOL)

HSP 1 Score: 90.5 bits (223), Expect = 3.180e-21
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   22 GDLDRV-RLVKITGFVHSADGFAGQSLVLNGASDLFMEVFGRENGAHARSAVGVNTLPLGVCVEIEAIVEVGPS 240
            G+LD + R+VK+TGFV+  DGF  Q  V+NGASDL +++FG + G HARSAVG N LPL V VEIEAIVEV PS
Sbjct:   82 GNLDHIKRIVKLTGFVNCVDGFTAQPAVINGASDLLVQIFG-DKGKHARSAVGTNALPLNVAVEIEAIVEVDPS 154          
BLAST of mRNA_L-elsbetiae_contig19522.5807.1 vs. uniprot
Match: A0A812XST0_SYMMI (TCP17 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XST0_SYMMI)

HSP 1 Score: 89.4 bits (220), Expect = 3.950e-21
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   13 AAAGDLDRV-RLVKITGFVHSADGFAGQSLVLNGASDLFMEVFGRENGAHARSAVGVNTLPLGVCVEIEAIVEV 231
            +A GDLD+V R+VK+ GFV     F  Q  V+NG SDL +EVFG E G HARSAVG N LPLGV VEIEAI+EV
Sbjct:   55 SAVGDLDKVKRIVKLVGFVQCEGDFTQQPAVVNGCSDLMVEVFGMEKGRHARSAVGTNALPLGVAVEIEAIIEV 128          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19522.5807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF39_ECTSI2.240e-3486.30Putative Translation Initiation Inhibitor n=1 Tax=... [more]
A0A7S3M7I1_9STRA2.640e-2267.57Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6H5KXY4_9PHAE5.150e-2268.00YjgF_endoribonc domain-containing protein n=2 Tax=... [more]
A0A536EQF5_9CHLR1.300e-2163.51RidA family protein n=2 Tax=Chloroflexi bacterium ... [more]
A0A7S3U393_9SPIT2.070e-2164.00Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A2W6ACU6_9BACT2.470e-2167.57YjgF_endoribonc domain-containing protein n=1 Tax=... [more]
A0A2R5GI79_9STRA2.700e-2167.57Protein TCP17 n=1 Tax=Hondaea fermentalgiana TaxID... [more]
A0A1M7RRP4_9RHOB2.730e-2160.53Enamine deaminase RidA, house cleaning of reactive... [more]
A0A8K1C318_PYTOL3.180e-2163.51Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A812XST0_SYMMI3.950e-2163.51TCP17 protein n=1 Tax=Symbiodinium microadriaticum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19522contigL-elsbetiae_contig19522:2357..2602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue4.9e-27
Seed eggNOG ortholog2880.D8LF39
Hectar predicted targeting categoryother localisation
EggNOG free text desc.YjgF/chorismate_mutase-like, putative endoribonuclease
EggNOG OGs2QS7E@2759,COG0251@1
Ec32 ortholog descriptionputative Translation Initiation Inhibitor
Ec32 orthologEc-06_001550.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size246
Cds size246
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815810.2037787-CDS-L-elsbetiae_contig19522:2356..26021622815810.2037787-CDS-L-elsbetiae_contig19522:2356..2602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19522 2357..2602 +
1691683117.5100281-CDS-L-elsbetiae_contig19522:2356..26021691683117.5100281-CDS-L-elsbetiae_contig19522:2356..2602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19522 2357..2602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19522.5807.1prot_L-elsbetiae_contig19522.5807.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19522 2357..2602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19522.5807.1

>prot_L-elsbetiae_contig19522.5807.1 ID=prot_L-elsbetiae_contig19522.5807.1|Name=mRNA_L-elsbetiae_contig19522.5807.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
MQQTAAAGDLDRVRLVKITGFVHSADGFAGQSLVLNGASDLFMEVFGREN
GAHARSAVGVNTLPLGVCVEIEAIVEVGPSG*
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mRNA from alignment at L-elsbetiae_contig19522:2357..2602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19522.5807.1 ID=mRNA_L-elsbetiae_contig19522.5807.1|Name=mRNA_L-elsbetiae_contig19522.5807.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=246bp|location=Sequence derived from alignment at L-elsbetiae_contig19522:2357..2602+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACAAACAGCGGCGGCGGGGGACTTGGACAGGGTAAGATTGGTCAA GATCACCGGCTTCGTGCACAGCGCCGACGGTTTCGCCGGCCAGTCGCTGG TCCTCAACGGCGCCAGCGACCTCTTCATGGAAGTTTTCGGCAGAGAAAAC GGCGCGCACGCACGGAGCGCGGTGGGCGTCAACACGCTGCCGCTGGGGGT CTGCGTAGAGATTGAGGCGATAGTTGAAGTCGGTCCTTCGGGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19522:2357..2602+

>mRNA_L-elsbetiae_contig19522.5807.1 ID=mRNA_L-elsbetiae_contig19522.5807.1|Name=mRNA_L-elsbetiae_contig19522.5807.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig19522:2357..2602+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACAAACAGCGGCGGCGGGGGACTTGGACAGGGTAAGATTGGTCAA
GATCACCGGCTTCGTGCACAGCGCCGACGGTTTCGCCGGCCAGTCGCTGG
TCCTCAACGGCGCCAGCGACCTCTTCATGGAAGTTTTCGGCAGAGAAAAC
GGCGCGCACGCACGGAGCGCGGTGGGCGTCAACACGCTGCCGCTGGGGGT
CTGCGTAGAGATTGAGGCGATAGTTGAAGTCGGTCCTTCGGGTTGAATGC
AACAAACAGCGGCGGCGGGGGACTTGGACAGGGTAAGATTGGTCAAGATC
ACCGGCTTCGTGCACAGCGCCGACGGTTTCGCCGGCCAGTCGCTGGTCCT
CAACGGCGCCAGCGACCTCTTCATGGAAGTTTTCGGCAGAGAAAACGGCG
CGCACGCACGGAGCGCGGTGGGCGTCAACACGCTGCCGCTGGGGGTCTGC
GTAGAGATTGAGGCGATAGTTGAAGTCGGTCCTTCGGGTTGA
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