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Homology
BLAST of mRNA_L-elsbetiae_contig1951.5803.1 vs. uniprot
Match: A0A6H5JB60_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB60_9PHAE) HSP 1 Score: 194 bits (493), Expect = 3.950e-51 Identity = 131/250 (52.40%), Postives = 151/250 (60.40%), Query Frame = 1
Query: 34 AEKLQIQAGPCCSLSRKIHATAGASXXXXXXXXXXXXSGIARQDRLLVSTRGSSASHAVFGLEAPLALSAHAAAAIG---EGRAERGGAEEGVFEG---ATGEGCREECHRQARGNEAGAQEEALNWGGGQQAGQGASGAGGALADHQSWSRRWTRFPGVMKGHQSQQTLSRSLLWEPCPGAGLLIAGGDERTNQPWIWDASSGDVCNRLASHRSPVLDVASLCLQDGSSGTGLFAAVSQGEMNVYQTRA 765
AEKLQIQAG CCSLS+ H TA +S S Q LVSTRGSSASHAVF L + A S AA A G AE +E EG A G EE + E + + ++G G + + A+ +SW+ RWTR P V +GHQSQ TLSRSLLW+P PG GLLIAGGDERT QPW+WDA +GDVCNRLASHRSPVLD A CLQD SSG GL +AVSQ E+ VYQT A
Sbjct: 554 AEKLQIQAGACCSLSQS-HGTAASS------------SSDVDQQPFLVSTRGSSASHAVFRLASASASSRQAATAAGVRENPTAESHKDQEVAVEGRRDAGGYVAMEEDQSERFECEHATERQPSSFGFGSSLARLS-----AMVARRSWADRWTRSPRVAQGHQSQHTLSRSLLWDPSPGDGLLIAGGDERTKQPWMWDALTGDVCNRLASHRSPVLDFA--CLQDYSSGKGLLSAVSQSEIKVYQTCA 783
BLAST of mRNA_L-elsbetiae_contig1951.5803.1 vs. uniprot
Match: D8LKW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW0_ECTSI) HSP 1 Score: 114 bits (284), Expect = 1.890e-23 Identity = 92/203 (45.32%), Postives = 107/203 (52.71%), Query Frame = 1
Query: 28 EQAEKLQIQAGPCCSLSRKIHATAGASXXXXXXXXXXXXSGIARQDRLLVSTRGSSASHAVFGLEAPLALSAHAAAAIGEGR---AERGGAEEGVFEGATGEGCREECHRQARGNEAGAQEEALNWGGGQQAGQGASGAGG---------ALADHQSWSRRWTRFPGVMKGHQSQQTLSRSLLWEPCPGAGLLIAGGDERTNQ 600
+ AEKLQIQAG CCSLS+ H TA AS S Q LVSTRGSSASH VF L A S AAAA G G AE +E EG R A GN A ++++ + A + + G A+ +SW+ RWTR P V +GHQSQ TLSRSLLW+P PG GLLIAGGDERT Q
Sbjct: 477 QAAEKLQIQAGACCSLSQS-HGTAAAS------------SSDVDQQPFLVSTRGSSASHTVFRLAPASACSRQAAAAAGVGENPTAESHKDQEVAVEG----------QRDAGGNVAMEEDQSEEKFECEHAVERQPSSLGFDTSLARLSAVVARRSWADRWTRSPRVAQGHQSQHTLSRSLLWDPSPGDGLLIAGGDERTKQ 656
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 62.8 |
| Seed ortholog evalue | 1e-07 |
| Seed eggNOG ortholog | 2880.D8LKW0 |
| KEGG ko | ko:K15691 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000075,GO:0000077,GO:0000278,GO:0000724,GO:0000725,GO:0002039,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010564,GO:0010948,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022402,GO:0031297,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0036211,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045005,GO:0045786,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0097371,GO:0140096,GO:1901360,GO:1901564,GO:1901576,GO:1901976,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902806,GO:1902807,GO:1903047,GO:2000001,GO:2000045,GO:2000134,GO:2001020 |
| EggNOG free text desc. | MDM2/MDM4 family protein binding |
| EggNOG OGs | KOG1645@1,KOG1645@2759 |
| EC | 2.3.2.27 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko04121 |
| Exons | 4 |
| Model size | 1330 |
| Cds size | 282 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815809.8280814-UTR-L-elsbetiae_contig1951:10949..11502 | 1622815809.8280814-UTR-L-elsbetiae_contig1951:10949..11502 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1951 10950..11502 - |
| 1691683117.2601163-UTR-L-elsbetiae_contig1951:10949..11502 | 1691683117.2601163-UTR-L-elsbetiae_contig1951:10949..11502 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1951 10950..11502 - |
| 1622815809.878764-UTR-L-elsbetiae_contig1951:13797..14238 | 1622815809.878764-UTR-L-elsbetiae_contig1951:13797..14238 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1951 13798..14238 - |
| 1691683117.3041072-UTR-L-elsbetiae_contig1951:13797..14238 | 1691683117.3041072-UTR-L-elsbetiae_contig1951:13797..14238 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1951 13798..14238 - |
| 1622815809.8906226-UTR-L-elsbetiae_contig1951:14432..14486 | 1622815809.8906226-UTR-L-elsbetiae_contig1951:14432..14486 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1951 14433..14486 - |
| 1691683117.3129203-UTR-L-elsbetiae_contig1951:14432..14486 | 1691683117.3129203-UTR-L-elsbetiae_contig1951:14432..14486 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1951 14433..14486 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815809.8434699-CDS-L-elsbetiae_contig1951:11502..11679 | 1622815809.8434699-CDS-L-elsbetiae_contig1951:11502..11679 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1951 11503..11679 - |
| 1691683117.2771184-CDS-L-elsbetiae_contig1951:11502..11679 | 1691683117.2771184-CDS-L-elsbetiae_contig1951:11502..11679 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1951 11503..11679 - |
| 1622815809.8556066-CDS-L-elsbetiae_contig1951:12725..12824 | 1622815809.8556066-CDS-L-elsbetiae_contig1951:12725..12824 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1951 12726..12824 - |
| 1691683117.285845-CDS-L-elsbetiae_contig1951:12725..12824 | 1691683117.285845-CDS-L-elsbetiae_contig1951:12725..12824 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1951 12726..12824 - |
| 1622815809.865477-CDS-L-elsbetiae_contig1951:13791..13797 | 1622815809.865477-CDS-L-elsbetiae_contig1951:13791..13797 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1951 13792..13797 - |
| 1691683117.2955792-CDS-L-elsbetiae_contig1951:13791..13797 | 1691683117.2955792-CDS-L-elsbetiae_contig1951:13791..13797 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1951 13792..13797 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1951.5803.1 >prot_L-elsbetiae_contig1951.5803.1 ID=prot_L-elsbetiae_contig1951.5803.1|Name=mRNA_L-elsbetiae_contig1951.5803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MKGHQSQQTLSRSLLWEPCPGAGLLIAGGDERTNQPWIWDASSGDVCNRL
ASHRSPVLDVASLCLQDGSSGTGLFAAVSQGEMNVYQTRASDE* back to topmRNA from alignment at L-elsbetiae_contig1951:10950..14486- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1951.5803.1 ID=mRNA_L-elsbetiae_contig1951.5803.1|Name=mRNA_L-elsbetiae_contig1951.5803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3537bp|location=Sequence derived from alignment at L-elsbetiae_contig1951:10950..14486- (Laminarionema elsbetiae ELsaHSoW15)
GCTGGGGATGGGAGTGGGAGTGGGGTGGAGCAGGCAGAAAAGCTACAGAT
ACAGGTATGTAGGAAGAAATATGCCAGCTTTGACCTACAACTCAGGGACC
ACGAGCTTGGTCGTAAGGGTACCCCCCGCCCCCCTTCCACCCCCCCGCCC
TCCGGCGGACTGCTTGGCGGTAGGAACAATGCTCAAAACGGCCATACTAC
GACACCTTTGAGTATTTTTCTCGCAAAACACTGTTGGATGCTTCCCAGGC
GGGTCCATGCTGCTCCCTCTCCCGGAAGATCCACGCCACGGCGGGGGCGA
GCAGTAGCAGTAGCAGCGGCGGTAGTAGCAGCGGTGGTAGTGGCATTGCG
CGGCAAGACCGGTTACTCGTGTCTACCAGGGGCTCGTCCGCAAGCCATGC
CGTGTTCGGGCTAGAAGCGCCGCTCGCTCTCTCTGCACATGCAGCCGCCG
CCATCGGGGAAGGCAGGGCAGAGAGAGGGGGCGCCGAAGAGGGTGTTTTC
GAGGGCGCAACGGGAGAGGGGTGTCGAGAGGAGTGCCATCGCCAGGCTAG
AGGAAACGAGGCGGGGGCGCAAGAAGAGGCTCTGAACTGGGGAGGTGGGC
AGCAGGCCGGCCAGGGTGCTTCGGGCGCCGGGGGAGCTTTGGCAGACCAC
CAGTCGTGGTCGAGGAGGTGGACGAGATTTCCCGGCGTGATGAAGGTAGA
CTGTTGTGTGTGCGTGTGTGTGATCCTCGTACGGCATATGGTACGTCACA
TGTAACCTAAATACCTAGCCTCCCTTGCTTAGTGCATAACACAAAATCAG
GCGCAGCTCTTCACAGGAGCGCATGCCCCACCTGGTTTAAAGGTTTCCCT
GCAGGCAGTATATCTTGGATGGGGAAACAGGGGGTTAGTATGCCTACAAC
AGTCCCTCTGGAACGACTTCTTCGCAGACTGGACGTAGACTGCTGACATT
TGTATCCATTAACTAAAACATGGCTGCTTTTCGAGGAATGTCTGTTCTTG
ACTCCACACTCACGACCATTGACCACTTATGCTTGGCAGAACAGGTGCAA
AGATGTACGTAAAGACAGGTGTCTTGTAGCAGTTTGGCGGTGTTGACTGC
GGGAACGGATCCGCCTTTCATCCGATGCACTAACTTAAGGGGACTGTGAC
GCTGCTAGACACACCTATAACCTAACTCAAGACAAATTAATCTCGGCTAT
CAACAGCTAGACTAGCTCTCCATCCAGAGGCCCATGGCGCTCACACCTCA
AAATTTTCTTGGGGCGTGTTGGCGTACTCAGGAGAGGGTTGTAGGGTTGC
CCGGCGCACATGGGACAGCGCGAAAGCCAAATTCGGGGCCTCAGGCCAAA
AGGGCCTTTGTAGCTCAGTTGAGGGCTGGCGCGCTCTGCACACTGTACTC
GCTGTCTAAATAGAGATTCAACGAATGTCCTGAAATATGCTACCACAAGT
TTCAAAAGTTAGTGCGTGTGCTCGTGTTACTGATGAGAGGCAGATGCCGG
GAGAAGCCGCCGTGGCGGGGAGGGTCTCTTGTGGAACTTGGGGCTTGTCA
GTGCGTGCAGGTCGTCGTGGAAACATTAGCACTGTAGCTGCACCTCCGTC
TGACAGATCAGATCACACGCGACCATGTTTCTGTTTGTTTGTCGAACACC
TCTCGACGCTAGGGACATCAAAGCCAGCAGACGCTTTCGAGGTCACTGCT
ATGGGAGCCTTGCCCAGGAGCAGGTCTGCTAATCGCCGGTGGAGACGAAC
GCACCAATCAGGTACTACGATGGGGTAGAGGTGTTGAGGTGTTGAGGTGC
TCTACACAGCAGTAGTAGAGTCTTTGCTTACCCTTTCTACCATCGATGAT
ACCCTATGCTGCACCGTTTGTCACCAAGAGGCACATGGGTGTAAATAAAA
GTCACCCATATATCGTAATATCCCTTGAAAACACCCCGGGGGGCGATTTT
AAATTTTGGGTGAAAAAGAACGCCCCGGGGGCGTTTTTCACGGGGAGGGA
GGCGATCTTTCCACAAAAAAATTGAAACGCCCGGGGCGAAAAGTCCCCAG
GGGCGTGGTGTGTGTTTTTTTTCCTTGCCACACACACACACCTCACATCG
CGGACCCCGCAAGTTGTCGGACAACAAGCGACCGCACAACAACTGTTTAC
AACGCTCTTCTTTAAATAAAGCAACATCGCCTCCAACAACTAGAGGAAAC
GAACAGCAGCTGTTGGAACACAAAGAGCAGTTCTGTGACTCCCCTCCCCC
GGGGGCGTGGGAAAACATGAGCCAAAAAAGGCGTTCTCAAAGGTAGAGGG
GCGATAAAAAAAAAAAAGTCGGACGCCCCGGGGCGTTCTCAAGGTTTTTG
GGGTGCACCAGCCGTATTTGTTTTTTGGGGGGGGGCGTTCTCCTGAGAGG
GGCGTTCTCAAGGGGCATTAGGGTATTTTCTTGTGTCTGAAGAGTCGACG
TTATTGTGAGGTATGATAGAGAAGGGTTGTTGTTTGGGGAAGGTATGTAG
CAGTGTCTCACAGAGCGTGCCTTCCGTCGGCAGTGCTCATCATGCTCATC
ATGGATGCACCACTTGTTAGCCACAACGTTCAAGGTTCAACTTTGGCGAT
ACAGAAGTAGCTGAGTTGGGACTTTTCGCCGAATACAAACTTCCTTCTAC
ATAAATATTGACATATGCATCCAATATGGCTAGACAGCGTGCGCATTGTA
TTGATTACTTTATCTCGAAAGGTATGTTTCGTCATCCTTCACTAACCCGC
AATGTCTTCCCCTTCGTCACCTGTCACCCCGCGAACGAATAACTCTCTGT
TGTTCAGCCTTGGATATGGGACGCGTCGTCGGGAGATGTGTGTAACCGCC
TGGCTTCCCATCGCAGCCCCGTATTGGACGTGGCCTCTCTCTGTCTCCAG
GACGGTTCGTCAGGAACAGGGCTGTTTGCCGCCGTTAGTCAGGGCGAGAT
GAACGTGTACCAGACCCGTGCATCGGACGAGTGATGAGTGATAGGTGATA
AGTGTTGATAAAGCAGGCATTTCCGTCCTCTTCTTCGCCTTATTGCGTGT
ACAAAGTGTATCCAACAGAGTTAGGGCTAGGACAGGTATTTATCCTGCCG
CACAGCCAGAGAGAGCTCTATTGCCTTTGGTTTTTGCCAGCGAGAGTGAT
GGGCGGCAGCGCTAGAACACAGTTTTCTAAACCGTTTGAAACATGAGTCG
CCAAAGCCAGGAGAGGAGAGTAAGAGTCGACGCGATCTGCGATCCAGGAG
AAGAAACAGCAAGATGCCCGTGCCAGTATCACGGTACGGGGATGCTTCCG
CGAGAAAAACGGGACGAGGAACTCGGACTTGACACGTGCTTCGTGTGTAT
GTACAAGGACATGTTGTACACGTAGGCAGGACAGGTGTCTCCTCGGAGAA
CGACTTGGTTCCTTTGTAGAAACACGTGCCTGTGTGTGTGTGTTGCAAAT
ATTTTGTTTTCAGCTGGAGGACACAGAAACATACTGGAAAAACAGGGCCC
GCGGTGGCGAGAGCGGAGCCCCCCGCCCAAAACGTGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1951:10950..14486- >mRNA_L-elsbetiae_contig1951.5803.1 ID=mRNA_L-elsbetiae_contig1951.5803.1|Name=mRNA_L-elsbetiae_contig1951.5803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig1951:10950..14486- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGATGAAGGGACATCAAAGCCAGCAGACGCTTTCGAGGTCACTGCT
ATGGGAGCCTTGCCCAGGAGCAGGTCTGCTAATCGCCGGTGGAGACGAAC
GCACCAATCAGGGACATCAAAGCCAGCAGACGCTTTCGAGGTCACTGCTA
TGGGAGCCTTGCCCAGGAGCAGGTCTGCTAATCGCCGGTGGAGACGAACG
CACCAATCAGCCTTGGATATGGGACGCGTCGTCGGGAGATGTGTGTAACC
GCCTGGCTTCCCATCGCAGCCCCGTATTGGACGTGGCCTCTCTCTGTCTC
CAGGACGGTTCGTCAGGAACAGGGCTGTTTGCCGCCGTTAGTCAGGGCGA
GATGAACGTGTACCAGACCCGTGCATCGGACGAGTGACCTTGGATATGGG
ACGCGTCGTCGGGAGATGTGTGTAACCGCCTGGCTTCCCATCGCAGCCCC
GTATTGGACGTGGCCTCTCTCTGTCTCCAGGACGGTTCGTCAGGAACAGG
GCTGTTTGCCGCCGTTAGTCAGGGCGAGATGAACGTGTACCAGACCCGTG
CATCGGACGAGTGA back to top
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