mRNA_L-elsbetiae_contig1949.5790.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1949.5790.1
Unique NamemRNA_L-elsbetiae_contig1949.5790.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1949.5790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1949contigL-elsbetiae_contig1949:5054..5952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size449
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1949.5790.1prot_L-elsbetiae_contig1949.5790.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1949 5054..5921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815808.356261-CDS-L-elsbetiae_contig1949:5053..52251622815808.356261-CDS-L-elsbetiae_contig1949:5053..5225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1949 5054..5225 -
1691683116.1915867-CDS-L-elsbetiae_contig1949:5053..52251691683116.1915867-CDS-L-elsbetiae_contig1949:5053..5225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1949 5054..5225 -
1622815808.3699672-CDS-L-elsbetiae_contig1949:5676..59211622815808.3699672-CDS-L-elsbetiae_contig1949:5676..5921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1949 5677..5921 -
1691683116.2004476-CDS-L-elsbetiae_contig1949:5676..59211691683116.2004476-CDS-L-elsbetiae_contig1949:5676..5921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1949 5677..5921 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815808.3833845-UTR-L-elsbetiae_contig1949:5921..59521622815808.3833845-UTR-L-elsbetiae_contig1949:5921..5952Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1949 5922..5952 -
1691683116.2098453-UTR-L-elsbetiae_contig1949:5921..59521691683116.2098453-UTR-L-elsbetiae_contig1949:5921..5952Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1949 5922..5952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1949.5790.1

>prot_L-elsbetiae_contig1949.5790.1 ID=prot_L-elsbetiae_contig1949.5790.1|Name=mRNA_L-elsbetiae_contig1949.5790.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MSLYSLATDLFSDMDKVRAANATDRARNQQQRGTPESGGREQHAAGQGDL
LPRLKPGVCGANHIPPTLELLEGCLNDVQKSRSSATRRKISFEPVPARRD
ASLPAPCEVVSFTTDVQLNCSPQHGYRKRSSTAGAAMGG
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mRNA from alignment at L-elsbetiae_contig1949:5054..5952-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1949.5790.1 ID=mRNA_L-elsbetiae_contig1949.5790.1|Name=mRNA_L-elsbetiae_contig1949.5790.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=899bp|location=Sequence derived from alignment at L-elsbetiae_contig1949:5054..5952- (Laminarionema elsbetiae ELsaHSoW15)
ATACTCCACGATCTTGGAGACAACACCAACCATGTCCCTATACAGCCTCG
CTACCGATTTATTTTCGGATATGGACAAAGTCCGAGCTGCAAACGCGACC
GACAGAGCGAGGAACCAGCAGCAGCGTGGGACGCCAGAAAGCGGGGGACG
AGAGCAACACGCTGCAGGCCAGGGAGATCTGCTACCACGGCTGAAACCTG
GAGTGTGTGGCGCCAACCATATACCTCCGACTCTGGAGCTGCTGGAAGGA
TGCTTGAATGATGTTCAAAAGAGCAGGTGTCATCGCGTTGCCTGGTGTAT
TCCTCACAATACAAAATGATTGAAGGAATATTTGCTTGTTTGTATCGGAT
ATGTAGAACCACAGGGTGGACTTCCATAACTCTTTGTGCGGAGCCTTACA
CGCCAAAAGCTACTTTTGATTGCAGCGAATGATACATGTTGAAGGGGTGA
CCGTGGTAGAACTTCGCTCTTCTTGCTCATCCATTGTTGCAAGCCTTTCG
GCACATTCGGGTAGCACCTTGGCTATCGGACGCCCTCCTTGAAAAATGTA
CAATGCACCGTACAGTGAATGATTATCCCCATCCTGTACCCCATATTCAT
TTTGTACTATTCACTGTCCTCTTGAAGGGTCTTCAAGGAAATAACGAAAT
CTCATCAATTGCCTTAAGTTATATAGAACGCGACGAGCTTCCGACCGTTT
GCTCTGTTCTGTTGTACACACATGCAGGTCGAGTGCCACACGACGAAAAA
TATCGTTTGAGCCTGTTCCTGCCCGAAGGGATGCATCCTTGCCAGCACCA
TGTGAGGTGGTATCGTTCACTACAGACGTACAACTGAACTGTTCACCACA
ACATGGTTATCGAAAGAGAAGCAGCACTGCTGGTGCAGCAATGGGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1949:5054..5952-

>mRNA_L-elsbetiae_contig1949.5790.1 ID=mRNA_L-elsbetiae_contig1949.5790.1|Name=mRNA_L-elsbetiae_contig1949.5790.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig1949:5054..5952- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCCTATACAGCCTCGCTACCGATTTATTTTCGGATATGGACAAAGT
CCGAGCTGCAAACGCGACCGACAGAGCGAGGAACCAGCAGCAGCGTGGGA
CGCCAGAAAGCGGGGGACGAGAGCAACACGCTGCAGGCCAGGGAGATCTG
CTACCACGGCTGAAACCTGGAGTGTGTGGCGCCAACCATATACCTCCGAC
TCTGGAGCTGCTGGAAGGATGCTTGAATGATGTTCAAAAGAGCAGATGTC
CCTATACAGCCTCGCTACCGATTTATTTTCGGATATGGACAAAGTCCGAG
CTGCAAACGCGACCGACAGAGCGAGGAACCAGCAGCAGCGTGGGACGCCA
GAAAGCGGGGGACGAGAGCAACACGCTGCAGGCCAGGGAGATCTGCTACC
ACGGCTGAAACCTGGAGTGTGTGGCGCCAACCATATACCTCCGACTCTGG
AGCTGCTGGAAGGATGCTTGAATGATGTTCAAAAGAGCAGGTCGAGTGCC
ACACGACGAAAAATATCGTTTGAGCCTGTTCCTGCCCGAAGGGATGCATC
CTTGCCAGCACCATGTGAGGTGGTATCGTTCACTACAGACGTACAACTGA
ACTGTTCACCACAACATGGTTATCGAAAGAGAAGCAGCACTGCTGGTGCA
GCAATGGGCGGGGTCGAGTGCCACACGACGAAAAATATCGTTTGAGCCTG
TTCCTGCCCGAAGGGATGCATCCTTGCCAGCACCATGTGAGGTGGTATCG
TTCACTACAGACGTACAACTGAACTGTTCACCACAACATGGTTATCGAAA
GAGAAGCAGCACTGCTGGTGCAGCAATGGGCGGG
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