mRNA_L-elsbetiae_contig19487.5789.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19487.5789.1
Unique NamemRNA_L-elsbetiae_contig19487.5789.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19487.5789.1 vs. uniprot
Match: A0A6H5JII8_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII8_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.660e-22
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 DPDLNFNETKYGTVMSAISVPNLFMPFFGGVFLDSKGHKTGIMLFLTLELVG 156
            DP L+FNETKYGTVMSAIS+PNLFMPFFGG+FLDSKGHK GI++FL+LEL+G
Sbjct:  160 DPKLHFNETKYGTVMSAISIPNLFMPFFGGLFLDSKGHKQGIIIFLSLELIG 211
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BLAST of mRNA_L-elsbetiae_contig19487.5789.1 vs. uniprot
Match: D7FMB1_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMB1_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.530e-21
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 DPDLNFNETKYGTVMSAISVPNLFMPFFGGVFLDSKGHKTGIMLFLTLELVG 156
            DP L+FNETKYGTVMSAI +PNLFMPFFGG+FLDSKGHK GI++FL++EL+G
Sbjct:   30 DPKLHFNETKYGTVMSAIWIPNLFMPFFGGLFLDSKGHKQGIIMFLSVELIG 81
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BLAST of mRNA_L-elsbetiae_contig19487.5789.1 vs. uniprot
Match: A0A836CI63_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI63_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.880e-12
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 DPDLNFNETKYGTVMSAISVPNLFMPFFGGVFLDSKGHKTGIMLFLTLELVG 156
            +P LNF   KYG++MSA S+PN+ MPF GGV LDSKG + GI  FL + L G
Sbjct:  171 NPKLNFTGVKYGSIMSAQSLPNIVMPFLGGVILDSKGPRVGIKTFLAIALAG 222
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BLAST of mRNA_L-elsbetiae_contig19487.5789.1 vs. uniprot
Match: A0A835Z1U8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.580e-11
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    4 PDLNFNETKYGTVMSAISVPNLFMPFFGGVFLDSKGHKTGIMLFLTLELVG 156
            P L+FN  KYG++MSA S+PN+ MPFFGG+ LDSK  + G+  FL + + G
Sbjct:  135 PSLHFNAIKYGSIMSAQSLPNVLMPFFGGIILDSKNSRVGLRTFLAVTVAG 185
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BLAST of mRNA_L-elsbetiae_contig19487.5789.1 vs. uniprot
Match: K8YXS2_NANGC (Major facilitator superfamily n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YXS2_NANGC)

HSP 1 Score: 63.5 bits (153), Expect = 2.040e-10
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 DPDLNFNETKYGTVMSAISVPNLFMPFFGGVFLDSKGHKTGIMLFLTLELVGK 159
            D  L+ +ET+YG ++S  S+PN F+PF GGVFLD +GH+   +LFL L L+G+
Sbjct:  199 DARLHLSETRYGLLLSMSSLPNFFIPFLGGVFLDKRGHRFATLLFLFLVLLGQ 251
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BLAST of mRNA_L-elsbetiae_contig19487.5789.1 vs. uniprot
Match: W7TQA4_9STRA (Major facilitator superfamily n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQA4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.040e-10
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 DPDLNFNETKYGTVMSAISVPNLFMPFFGGVFLDSKGHKTGIMLFLTLELVGK 159
            D  L+ +ET+YG ++S  S+PN F+PF GGVFLD +GH+   +LFL L L+G+
Sbjct:  347 DARLHLSETRYGLLLSMSSLPNFFIPFLGGVFLDKRGHRFATLLFLFLVLLGQ 399
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BLAST of mRNA_L-elsbetiae_contig19487.5789.1 vs. uniprot
Match: A0A8K1CGU8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGU8_PYTOL)

HSP 1 Score: 57.4 bits (137), Expect = 3.030e-8
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 DPDLNFNETKYGTVMSAISVPNLFMPFFGGVFLDSKGHKTGIMLFLTLELVGK 159
            DPD     T YG ++SA+SVPN+F+P +GG FLD  GH++ I  FL    +G+
Sbjct:   78 DPDFPMTNTMYGALVSAVSVPNMFIPLYGGRFLDKSGHRS-IQFFLIWICIGQ 129
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BLAST of mRNA_L-elsbetiae_contig19487.5789.1 vs. uniprot
Match: A0A5D6XU00_9STRA (MFS domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XU00_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.030e-8
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 DPDLNFNETKYGTVMSAISVPNLFMPFFGGVFLDSKGHKTGIMLFLTLELVGK 159
            DPD     T YG ++SA+SVPN+F+P FGG  LD  GH + I++FL    VG+
Sbjct:  120 DPDFPITNTMYGALISAVSVPNMFLPLFGGRLLDKSGHAS-ILVFLVWICVGQ 171
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BLAST of mRNA_L-elsbetiae_contig19487.5789.1 vs. uniprot
Match: A0A6G0WCA3_9STRA (MFS domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCA3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.140e-8
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 DPDLNFNETKYGTVMSAISVPNLFMPFFGGVFLDSKGHKTGIMLFLTLELVGK 159
            DP +  + T YG + SA+S+PN+ +PFFGG  LDSKGH + I++FL +  +G+
Sbjct:   61 DPVVPVSNTMYGALNSAVSIPNMIVPFFGGHVLDSKGHDS-ILIFLVVMCIGQ 112
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BLAST of mRNA_L-elsbetiae_contig19487.5789.1 vs. uniprot
Match: A0A396ZS22_9STRA (MFS domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZS22_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 9.780e-8
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 DPDLNFNETKYGTVMSAISVPNLFMPFFGGVFLDSKGHKTGIMLFLTLELVG 156
            D       T YG + SA+SVPN+ +PFFGG  +DS+GH T IM FL L  +G
Sbjct:   14 DKAFPITNTMYGALNSAVSVPNMIIPFFGGHMIDSRGHYT-IMFFLVLMFIG 64
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19487.5789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JII8_9PHAE1.660e-2282.69MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FMB1_ECTSI2.530e-2178.85MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CI63_9STRA8.880e-1257.69Major facilitator superfamily domain-containing pr... [more]
A0A835Z1U8_9STRA1.580e-1152.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8YXS2_NANGC2.040e-1050.94Major facilitator superfamily n=1 Tax=Nannochlorop... [more]
W7TQA4_9STRA2.040e-1050.94Major facilitator superfamily n=2 Tax=Monodopsidac... [more]
A0A8K1CGU8_PYTOL3.030e-847.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XU00_9STRA3.030e-849.06MFS domain-containing protein n=1 Tax=Pythium bras... [more]
A0A6G0WCA3_9STRA4.140e-847.17MFS domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A396ZS22_9STRA9.780e-850.00MFS domain-containing protein n=1 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19487contigL-elsbetiae_contig19487:2081..2239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue2.3e-17
Seed eggNOG ortholog2880.D7FMB1
Preferred nameim:7160594
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.transmembrane transport
EggNOG OGsCOG0477@1,KOG4686@2759
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815808.3124738-CDS-L-elsbetiae_contig19487:2080..22391622815808.3124738-CDS-L-elsbetiae_contig19487:2080..2239Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19487 2081..2239 -
1691683116.1812625-CDS-L-elsbetiae_contig19487:2080..22391691683116.1812625-CDS-L-elsbetiae_contig19487:2080..2239Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19487 2081..2239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19487.5789.1prot_L-elsbetiae_contig19487.5789.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19487 2081..2239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19487.5789.1

>prot_L-elsbetiae_contig19487.5789.1 ID=prot_L-elsbetiae_contig19487.5789.1|Name=mRNA_L-elsbetiae_contig19487.5789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
DPDLNFNETKYGTVMSAISVPNLFMPFFGGVFLDSKGHKTGIMLFLTLEL
VGK
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mRNA from alignment at L-elsbetiae_contig19487:2081..2239-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19487.5789.1 ID=mRNA_L-elsbetiae_contig19487.5789.1|Name=mRNA_L-elsbetiae_contig19487.5789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=159bp|location=Sequence derived from alignment at L-elsbetiae_contig19487:2081..2239- (Laminarionema elsbetiae ELsaHSoW15)
GACCCTGACTTGAACTTCAACGAGACGAAGTACGGGACTGTCATGTCGGC
GATCTCGGTGCCGAACCTCTTCATGCCCTTCTTCGGCGGAGTGTTCCTCG
ACTCCAAGGGCCACAAGACCGGCATCATGTTATTCCTCACGCTGGAGCTC
GTCGGCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19487:2081..2239-

>mRNA_L-elsbetiae_contig19487.5789.1 ID=mRNA_L-elsbetiae_contig19487.5789.1|Name=mRNA_L-elsbetiae_contig19487.5789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig19487:2081..2239- (Laminarionema elsbetiae ELsaHSoW15)
GACCCTGACTTGAACTTCAACGAGACGAAGTACGGGACTGTCATGTCGGC
GATCTCGGTGCCGAACCTCTTCATGCCCTTCTTCGGCGGAGTGTTCCTCG
ACTCCAAGGGCCACAAGACCGGCATCATGTTATTCCTCACGCTGGAGCTC
GTCGGCAAGGACCCTGACTTGAACTTCAACGAGACGAAGTACGGGACTGT
CATGTCGGCGATCTCGGTGCCGAACCTCTTCATGCCCTTCTTCGGCGGAG
TGTTCCTCGACTCCAAGGGCCACAAGACCGGCATCATGTTATTCCTCACG
CTGGAGCTCGTCGGCAAG
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