mRNA_L-elsbetiae_contig1948.5788.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1948.5788.1
Unique NamemRNA_L-elsbetiae_contig1948.5788.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1948.5788.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 6.690e-83
Identity = 194/355 (54.65%), Postives = 229/355 (64.51%), Query Frame = 2 
Query:    2 VPAGVMDGVRALLNIGVDIDDYAEDEGDT--------------DTHAYP--GRIATPGAEAPRGQDYAGHD-------------GEGTVGSVDDTVDGNRTTHDDGNPVPTHNRSRDNGNDGSNNDYSGVRSTNGMILGGSTKTQSHASTTD-------------EDDTDQEDG---DDPWGDGRGESRWGQRI--GVTTGRSGTGDG-GAGLALAQALGSWCASVSAYDRLAYLAPGSAAQRAAEAETEWDELERRIARSSLDLQLEEFSIQVLSKEVTSATASTEYLSQKRAWGEDRLGVARLLSLFSPAGHSLVSWAAACGQTEVVEVLMSHGATAELGDETRAVSASIIQV 922
            +P GV++GVRALLNIG+D       EG++              D H+ P   R  T  A++   Q   G+              GE T      TVDGNR  H+    +  ++   DN N  +  D +  R+T  + L  +T TQ ++ TTD             EDD D +     +DPWGDG GESRWGQ    G   G S TG G GA LAL +ALGSWCASVSAYDRLA+L PGSAA+RAAEAETEWDELERRIARS LD+QLEEFS+QVL++E+  AT S EYL+QKRAW EDRLGVARLLSLFSPAGHSLVSWAAACGQTE+VE+LMSHGATAELGDETRAVSASIIQ+
Sbjct:  811 IPVGVLNGVRALLNIGIDGSSEGNAEGNSERRGSGCRLPGPLDDAHSPPHSDRTVTLSADSTCEQSGGGNXXXXXXXIEXNHSGGEETA----TTVDGNRAAHELSAQLSIYHGGTDNSNGRA--DANHRRNTKSVTLCDTTNTQIYSPTTDDGGGRXXXXXXXGEDDGDSDYSGADEDPWGDGCGESRWGQLTVRGTDIGTSHTGGGAGAELALVRALGSWCASVSAYDRLAHLPPGSAARRAAEAETEWDELERRIARSRLDVQLEEFSLQVLTEEIAGATTSAEYLTQKRAWVEDRLGVARLLSLFSPAGHSLVSWAAACGQTEIVEILMSHGATAELGDETRAVSASIIQL 1159
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BLAST of mRNA_L-elsbetiae_contig1948.5788.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 5.980e-76
Identity = 179/343 (52.19%), Postives = 209/343 (60.93%), Query Frame = 2 
Query:    2 VPAGVMDGVRALLNIGVDIDDYAEDEGDTDTHAYPGRIATP----------------GAEAPRGQDYAGHDGEGTVGSVDD---------TVDGNRTTHDDGNPVPTHNRSRDNGNDGSNNDYS-------GVRSTNGMILGGSTKTQSHASTTDEDDTDQEDGD-DPWGDGRGESRWGQRI--GVTTGRSGTG-DGGAGLALAQALGSWCASVSAYDRLAYLAPGSAAQRAAEAETEWDELERRIARSSLDLQLEEFSIQVLSKEVTSATASTEYLSQKRAWGEDRLGVARLLSLFSPAGHSLVSWAAACGQTEVVEVLMSHGATAELGDETRAVSASIIQV 922
            +P GV+DGVRALLNIG D       +GD++     GR+  P                 A++   Q   G+  E      ++         TVDGNR  H+    +  ++   DN N  ++ ++                               D DD+D    D DPWGDG GESRWGQ    G   G S TG D GA L L +ALGSWCASVSAYDRLA+L PGSAA+RAAE ETEWDELERRIAR  LD+QLEEFS QVL++E+ SAT S  YL+QK AW EDRLGVARLLSLFSPAGHSLVSWAAACGQTE+VE+LMSHGATAELGDETRAVSASIIQV
Sbjct: 1276 IPVGVLDGVRALLNIGTDGSAEGNTQGDSERRGSGGRLPGPLDDARSSPHSDRTVTLSADSTCEQSGGGNTTESASAIEENHSGDEETTPTVDGNRAAHELSTQLSIYHGGTDNSNGRADANHRRNXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGDDSDYSGADEDPWGDGYGESRWGQLTVRGTDIGTSHTGGDAGAELTLIRALGSWCASVSAYDRLAHLPPGSAARRAAETETEWDELERRIARLKLDVQLEEFSFQVLTEEIASATTSAAYLTQKLAWVEDRLGVARLLSLFSPAGHSLVSWAAACGQTEIVEILMSHGATAELGDETRAVSASIIQV 1618
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BLAST of mRNA_L-elsbetiae_contig1948.5788.1 vs. uniprot
Match: A0A7S1TZF4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZF4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.270e-6
Identity = 28/84 (33.33%), Postives = 52/84 (61.90%), Query Frame = 2 
Query:  671 IQVLSKEVTSATASTEYLSQKRAWGEDRLGVARLLSLFSPAGHSLVSWAAACGQTEVVEVLMSHGATAELGDETRAVSASIIQV 922
            +++ +KE+       E   ++    E+ L VA+LL + +P GH++++WAAA G  ++V++L+ HGA    GD+ R ++A  IQ+
Sbjct: 1128 VKMTAKEIAKLQVELEKAEERYKIAENCLKVAQLLQITTPCGHTMLTWAAAQGNVDIVDLLLDHGADPGQGDQYRHLAAGCIQM 1211
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1948.5788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FW96_ECTSI6.690e-8354.65Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ect... [more]
A0A6H5L2H6_9PHAE5.980e-7652.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1TZF4_9STRA8.270e-633.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1948contigL-elsbetiae_contig1948:21007..22165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.0
Seed ortholog evalue4e-74
Seed eggNOG ortholog2880.D7FW96
KEGG koko:K08873
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TNF receptor-associated factor
EggNOG OGsCOG0666@1,KOG0297@1,KOG0297@2759,KOG4177@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03019
Exons2
Model size922
Cds size906
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1948.5788.1prot_L-elsbetiae_contig1948.5788.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1948 21023..22165 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815808.2576575-UTR-L-elsbetiae_contig1948:21006..210221622815808.2576575-UTR-L-elsbetiae_contig1948:21006..21022Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1948 21007..21022 +
1691683116.1425343-UTR-L-elsbetiae_contig1948:21006..210221691683116.1425343-UTR-L-elsbetiae_contig1948:21006..21022Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1948 21007..21022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815808.2682347-CDS-L-elsbetiae_contig1948:21022..216751622815808.2682347-CDS-L-elsbetiae_contig1948:21022..21675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1948 21023..21675 +
1691683116.1559129-CDS-L-elsbetiae_contig1948:21022..216751691683116.1559129-CDS-L-elsbetiae_contig1948:21022..21675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1948 21023..21675 +
1622815808.2797034-CDS-L-elsbetiae_contig1948:21912..221651622815808.2797034-CDS-L-elsbetiae_contig1948:21912..22165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1948 21913..22165 +
1691683116.1685727-CDS-L-elsbetiae_contig1948:21912..221651691683116.1685727-CDS-L-elsbetiae_contig1948:21912..22165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1948 21913..22165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1948.5788.1

>prot_L-elsbetiae_contig1948.5788.1 ID=prot_L-elsbetiae_contig1948.5788.1|Name=mRNA_L-elsbetiae_contig1948.5788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=302bp
MDGVRALLNIGVDIDDYAEDEGDTDTHAYPGRIATPGAEAPRGQDYAGHD
GEGTVGSVDDTVDGNRTTHDDGNPVPTHNRSRDNGNDGSNNDYSGVRSTN
GMILGGSTKTQSHASTTDEDDTDQEDGDDPWGDGRGESRWGQRIGVTTGR
SGTGDGGAGLALAQALGSWCASVSAYDRLAYLAPGSAAQRAAEAETEWDE
LERRIARSSLDLQLEEFSIQVLSKEVTSATASTEYLSQKRAWGEDRLGVA
RLLSLFSPAGHSLVSWAAACGQTEVVEVLMSHGATAELGDETRAVSASII
QV
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mRNA from alignment at L-elsbetiae_contig1948:21007..22165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1948.5788.1 ID=mRNA_L-elsbetiae_contig1948.5788.1|Name=mRNA_L-elsbetiae_contig1948.5788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1159bp|location=Sequence derived from alignment at L-elsbetiae_contig1948:21007..22165+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCCCGGCCGGGGTAATGGACGGAGTGCGAGCGTTGTTGAATATCGGCG
TCGACATCGACGACTACGCCGAAGACGAAGGCGACACCGACACGCACGCA
TACCCGGGAAGAATCGCCACGCCCGGCGCAGAAGCTCCCCGTGGACAGGA
TTACGCCGGACACGACGGCGAGGGAACGGTAGGTTCCGTCGACGACACCG
TTGACGGGAACAGGACAACGCACGACGACGGCAATCCCGTGCCCACACAC
AACAGGAGCAGGGACAATGGCAACGACGGCAGCAACAACGACTACAGTGG
TGTTAGGAGCACAAACGGGATGATCCTCGGCGGCTCGACCAAGACACAGA
GCCACGCTTCGACCACCGACGAAGACGACACCGACCAGGAGGACGGCGAT
GACCCGTGGGGAGATGGTCGTGGCGAGTCGAGGTGGGGCCAGCGGATAGG
TGTCACGACGGGCAGAAGCGGCACCGGCGACGGCGGTGCTGGATTGGCCC
TTGCACAGGCTCTCGGGTCGTGGTGCGCTTCGGTGTCGGCGTACGATCGG
CTGGCCTACCTTGCACCCGGAAGTGCCGCACAGCGGGCGGCAGAGGCTGA
GACGGAGTGGGACGAGCTGGAGAGGCGAATCGCGCGCTCTAGCTTAGACC
TCCAACTGGAGGAGTTTAGGTGACCAACGATCATGTTGAGCATGCCGGAG
TAAATGACAGGAGCTCGGGACGCAAGTACCCGGAACAACACATGGTTTCC
TTGGAACGGTATTGTAGCGACCTGTAAAAGAGACAACCCTTTGTTGGCAC
TGCCCTCACAACCTCTACCATATCCACTTGTCGTTGTAACCATGGTTGAG
GCTGTGTTTTACGCCGCACACGTGCACCTCGTCCGGACAAAAAACAAAAC
TAACAGCATCCAGGTGCTGTCGAAGGAAGTAACCAGCGCCACCGCGTCCA
CGGAGTACCTGTCCCAGAAGCGAGCTTGGGGCGAGGATAGGCTGGGGGTG
GCGCGCCTCTTGTCGCTCTTCTCCCCGGCCGGACACAGCTTGGTCTCCTG
GGCCGCCGCGTGCGGGCAGACGGAAGTCGTGGAGGTCCTGATGAGCCACG
GCGCCACCGCGGAGCTCGGCGACGAGACCCGAGCCGTCTCCGCTTCCATC
ATACAGGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1948:21007..22165+

>mRNA_L-elsbetiae_contig1948.5788.1 ID=mRNA_L-elsbetiae_contig1948.5788.1|Name=mRNA_L-elsbetiae_contig1948.5788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1812bp|location=Sequence derived from alignment at L-elsbetiae_contig1948:21007..22165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGGAGTGCGAGCGTTGTTGAATATCGGCGTCGACATCGACGACTA
CGCCGAAGACGAAGGCGACACCGACACGCACGCATACCCGGGAAGAATCG
CCACGCCCGGCGCAGAAGCTCCCCGTGGACAGGATTACGCCGGACACGAC
GGCGAGGGAACGGTAGGTTCCGTCGACGACACCGTTGACGGGAACAGGAC
AACGCACGACGACGGCAATCCCGTGCCCACACACAACAGGAGCAGGGACA
ATGGCAACGACGGCAGCAACAACGACTACAGTGGTGTTAGGAGCACAAAC
GGGATGATCCTCGGCGGCTCGACCAAGACACAGAGCCACGCTTCGACCAC
CGACGAAGACGACACCGACCAGGAGGACGGCGATGACCCGTGGGGAGATG
GTCGTGGCGAGTCGAGGTGGGGCCAGCGGATAGGTGTCACGACGGGCAGA
AGCGGCACCGGCGACGGCGGTGCTGGATTGGCCCTTGCACAGGCTCTCGG
GTCGTGGTGCGCTTCGGTGTCGGCGTACGATCGGCTGGCCTACCTTGCAC
CCGGAAGTGCCGCACAGCGGGCGGCAGAGGCTGAGACGGAGTGGGACGAG
CTGGAGAGGCGAATCGCGCGCTCTAGCTTAGACCTCCAACTGGAGGAGTT
TAGATGGACGGAGTGCGAGCGTTGTTGAATATCGGCGTCGACATCGACGA
CTACGCCGAAGACGAAGGCGACACCGACACGCACGCATACCCGGGAAGAA
TCGCCACGCCCGGCGCAGAAGCTCCCCGTGGACAGGATTACGCCGGACAC
GACGGCGAGGGAACGGTAGGTTCCGTCGACGACACCGTTGACGGGAACAG
GACAACGCACGACGACGGCAATCCCGTGCCCACACACAACAGGAGCAGGG
ACAATGGCAACGACGGCAGCAACAACGACTACAGTGGTGTTAGGAGCACA
AACGGGATGATCCTCGGCGGCTCGACCAAGACACAGAGCCACGCTTCGAC
CACCGACGAAGACGACACCGACCAGGAGGACGGCGATGACCCGTGGGGAG
ATGGTCGTGGCGAGTCGAGGTGGGGCCAGCGGATAGGTGTCACGACGGGC
AGAAGCGGCACCGGCGACGGCGGTGCTGGATTGGCCCTTGCACAGGCTCT
CGGGTCGTGGTGCGCTTCGGTGTCGGCGTACGATCGGCTGGCCTACCTTG
CACCCGGAAGTGCCGCACAGCGGGCGGCAGAGGCTGAGACGGAGTGGGAC
GAGCTGGAGAGGCGAATCGCGCGCTCTAGCTTAGACCTCCAACTGGAGGA
GTTTAGCATCCAGGTGCTGTCGAAGGAAGTAACCAGCGCCACCGCGTCCA
CGGAGTACCTGTCCCAGAAGCGAGCTTGGGGCGAGGATAGGCTGGGGGTG
GCGCGCCTCTTGTCGCTCTTCTCCCCGGCCGGACACAGCTTGGTCTCCTG
GGCCGCCGCGTGCGGGCAGACGGAAGTCGTGGAGGTCCTGATGAGCCACG
GCGCCACCGCGGAGCTCGGCGACGAGACCCGAGCCGTCTCCGCTTCCATC
ATACAGGTCCATCCAGGTGCTGTCGAAGGAAGTAACCAGCGCCACCGCGT
CCACGGAGTACCTGTCCCAGAAGCGAGCTTGGGGCGAGGATAGGCTGGGG
GTGGCGCGCCTCTTGTCGCTCTTCTCCCCGGCCGGACACAGCTTGGTCTC
CTGGGCCGCCGCGTGCGGGCAGACGGAAGTCGTGGAGGTCCTGATGAGCC
ACGGCGCCACCGCGGAGCTCGGCGACGAGACCCGAGCCGTCTCCGCTTCC
ATCATACAGGTC
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