mRNA_L-elsbetiae_contig19466.5782.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19466.5782.1
Unique NamemRNA_L-elsbetiae_contig19466.5782.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19466.5782.1 vs. uniprot
Match: A0A0D2IVU7_9CHLO (Putative Pre-mRNA-splicing factor 8 like protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2IVU7_9CHLO)

HSP 1 Score: 173 bits (438), Expect = 4.060e-52
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            QAFLRVDD +++TFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTY+REAVI TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY+PK
Sbjct:   88 QAFLRVDDEALKTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYYREAVIHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYSPK 181
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BLAST of mRNA_L-elsbetiae_contig19466.5782.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 4.540e-52
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct: 1334 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 1427
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BLAST of mRNA_L-elsbetiae_contig19466.5782.1 vs. uniprot
Match: A0A836C932_9STRA (NUC071 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C932_9STRA)

HSP 1 Score: 181 bits (458), Expect = 7.410e-51
Identity = 90/94 (95.74%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            QAFLRVDDTSIRTFENR+RQ+LMSSGSTTFTKIANKWNTALIGLMTYFREAVI+TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct: 1273 QAFLRVDDTSIRTFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVINTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 1366
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BLAST of mRNA_L-elsbetiae_contig19466.5782.1 vs. uniprot
Match: T1GJN1_MEGSC (U5_2-snRNA_bdg domain-containing protein n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1GJN1_MEGSC)

HSP 1 Score: 166 bits (421), Expect = 5.290e-50
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            Q FLRVDD S+  F NR+RQ+LM+SGSTTFTKI NKWNTALIGLMTYFREAV++TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct:   39 QCFLRVDDESLGRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 132
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BLAST of mRNA_L-elsbetiae_contig19466.5782.1 vs. uniprot
Match: A0A7S3ZNT2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNT2_9STRA)

HSP 1 Score: 177 bits (450), Expect = 8.870e-50
Identity = 88/94 (93.62%), Postives = 93/94 (98.94%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            QAFLRVD+ S+RTFENR+RQVLMSSGSTTFTKIANKWNTALIGLMTYFREAV++TQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct: 1268 QAFLRVDEQSLRTFENRVRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 1361
[Close]
BLAST of mRNA_L-elsbetiae_contig19466.5782.1 vs. uniprot
Match: F0YIE3_AURAN (MPN domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIE3_AURAN)

HSP 1 Score: 177 bits (450), Expect = 8.870e-50
Identity = 88/94 (93.62%), Postives = 93/94 (98.94%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            QAFLRVD+ S+RTFENR+RQVLMSSGSTTFTKIANKWNTALIGLMTYFREAV++TQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct: 1264 QAFLRVDEQSLRTFENRVRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 1357
[Close]
BLAST of mRNA_L-elsbetiae_contig19466.5782.1 vs. uniprot
Match: A0A0S7ETQ1_9TELE (PRP8 (Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7ETQ1_9TELE)

HSP 1 Score: 167 bits (423), Expect = 1.030e-49
Identity = 81/94 (86.17%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            Q FLRVDD S++ F NR+RQ+LM+SGSTTFTKI NKWNTALIGLMTYFREAV++TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct:    7 QCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 100
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BLAST of mRNA_L-elsbetiae_contig19466.5782.1 vs. uniprot
Match: A0A822GTF2_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A822GTF2_9BILA)

HSP 1 Score: 166 bits (419), Expect = 1.580e-49
Identity = 80/94 (85.11%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            Q FLRVDD S+  + NR+RQ+LM+SGSTTFTKI NKWNTALIGLMTYFREAV++TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct:   68 QCFLRVDDESMNRYHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 161
[Close]
BLAST of mRNA_L-elsbetiae_contig19466.5782.1 vs. uniprot
Match: A0A3P6P388_ANISI (U5_2-snRNA_bdg domain-containing protein (Fragment) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A3P6P388_ANISI)

HSP 1 Score: 164 bits (415), Expect = 4.670e-49
Identity = 80/94 (85.11%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            Q FL+VD+ S+  F NRIRQ+LMSSGSTTFTKI NKWNTALIGLMTYFREAV++TQE+LDLLVKCENKIQTRIKIGLNSKMP+RFPPVVFYTPK
Sbjct:  119 QCFLKVDEESLLKFHNRIRQILMSSGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPARFPPVVFYTPK 212
[Close]
BLAST of mRNA_L-elsbetiae_contig19466.5782.1 vs. uniprot
Match: A0A7S0VFW5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0VFW5_9CHLO)

HSP 1 Score: 170 bits (431), Expect = 4.880e-49
Identity = 84/94 (89.36%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            QAFLR+DD  ++ FENRIRQVLMSSGSTTFTKIANKWNTALIGLMTY+REA I TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct:   52 QAFLRIDDEGLKAFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYYREAAIHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 145
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19466.5782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2IVU7_9CHLO4.060e-5291.49Putative Pre-mRNA-splicing factor 8 like protein n... [more]
A0A6H5K085_9PHAE4.540e-52100.00MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836C932_9STRA7.410e-5195.74NUC071 domain-containing protein n=1 Tax=Tribonema... [more]
T1GJN1_MEGSC5.290e-5086.17U5_2-snRNA_bdg domain-containing protein n=1 Tax=M... [more]
A0A7S3ZNT2_9STRA8.870e-5093.62Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0YIE3_AURAN8.870e-5093.62MPN domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A0S7ETQ1_9TELE1.030e-4986.17PRP8 (Fragment) n=2 Tax=Poeciliopsis prolifica Tax... [more]
A0A822GTF2_9BILA1.580e-4985.11Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A3P6P388_ANISI4.670e-4985.11U5_2-snRNA_bdg domain-containing protein (Fragment... [more]
A0A7S0VFW5_9CHLO4.880e-4989.36Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19466contigL-elsbetiae_contig19466:146..976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue7.9e-45
Seed eggNOG ortholog2880.D8LLJ8
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000386,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0030620,GO:0030623,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097157,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.U5 snRNA binding
EggNOG OGsCOG5178@1,KOG1795@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.4807487-CDS-L-elsbetiae_contig19466:145..2591622815807.4807487-CDS-L-elsbetiae_contig19466:145..259Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19466 146..259 -
1691683115.5492887-CDS-L-elsbetiae_contig19466:145..2591691683115.5492887-CDS-L-elsbetiae_contig19466:145..259Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19466 146..259 -
1622815807.4977446-CDS-L-elsbetiae_contig19466:808..9761622815807.4977446-CDS-L-elsbetiae_contig19466:808..976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19466 809..976 -
1691683115.5596766-CDS-L-elsbetiae_contig19466:808..9761691683115.5596766-CDS-L-elsbetiae_contig19466:808..976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19466 809..976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19466.5782.1prot_L-elsbetiae_contig19466.5782.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19466 146..976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19466.5782.1

>prot_L-elsbetiae_contig19466.5782.1 ID=prot_L-elsbetiae_contig19466.5782.1|Name=mRNA_L-elsbetiae_contig19466.5782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFRE
AVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
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mRNA from alignment at L-elsbetiae_contig19466:146..976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19466.5782.1 ID=mRNA_L-elsbetiae_contig19466.5782.1|Name=mRNA_L-elsbetiae_contig19466.5782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=831bp|location=Sequence derived from alignment at L-elsbetiae_contig19466:146..976- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGTTCCTCCGGGTGGACGACACCTCCATCCGGACGTTCGAGAACCG
CATCAGGCAGGTGCTCATGTCCTCGGGAAGCACCACCTTCACGAAGATCG
CCAACAAGTGGAACACCGCGCTCATAGGCCTCATGACCTACTTCCGCGAG
GCGGTCATCAGCACCCAGGTTGGGGTTTTATTTGTGTGTTGGCGTGTGCT
TTTTTTTCAGTAGTCTACGCGAGGTTTTTGTCTTCAGCTAACATATGGGA
TAAAGTATGGAAACCGTTTGGGGGGGTCGGTGGTTGGGGTTAGGGTTAGG
GTTAGAGTTAGTAGTATAAAATTAATTTCTGCGTAGGCGGTCCTTTTTTT
TGTGGTCCAAGTATATATATATTTTTTTATGTGTCTCTCGTGTTTGACTC
CCCTCCCCCCCCCTTCACTTGTTCCCCACAATTTACACGCCACCTTCTCA
ACACCCTCGCCACCTCCAAGCAGTTTAAGCCGACGCACTTCTGAGGCACA
AAGCTGTTGCTTTTCTTGCTTTCTGTGCAGTTCGCACGCGACGGCAGCAG
TGGCACCCCGCACAGCGCAACACGACGACAACAACGACGTAAATAGGCTA
ATATCAATCCCCCCCCCCCCCCGCCTCCTCTCACGTATACACCTGCGACG
TTCGACTGACTAACTACTGCTTGTGTTGTTTTTCCCGTTTGCCCGTGTGC
TCGCGTTCCGAGAGTAGGAGATGCTGGACCTGCTGGTGAAGTGCGAGAAC
AAGATCCAGACCCGAATCAAGATCGGTCTCAACTCCAAGATGCCGTCCAG
GTTCCCGCCCGTCGTGTTCTACACTCCCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19466:146..976-

>mRNA_L-elsbetiae_contig19466.5782.1 ID=mRNA_L-elsbetiae_contig19466.5782.1|Name=mRNA_L-elsbetiae_contig19466.5782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig19466:146..976- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGTTCCTCCGGGTGGACGACACCTCCATCCGGACGTTCGAGAACCG
CATCAGGCAGGTGCTCATGTCCTCGGGAAGCACCACCTTCACGAAGATCG
CCAACAAGTGGAACACCGCGCTCATAGGCCTCATGACCTACTTCCGCGAG
GCGGTCATCAGCACCCAGCAGGCGTTCCTCCGGGTGGACGACACCTCCAT
CCGGACGTTCGAGAACCGCATCAGGCAGGTGCTCATGTCCTCGGGAAGCA
CCACCTTCACGAAGATCGCCAACAAGTGGAACACCGCGCTCATAGGCCTC
ATGACCTACTTCCGCGAGGCGGTCATCAGCACCCAGGAGATGCTGGACCT
GCTGGTGAAGTGCGAGAACAAGATCCAGACCCGAATCAAGATCGGTCTCA
ACTCCAAGATGCCGTCCAGGTTCCCGCCCGTCGTGTTCTACACTCCCAAG
GAGATGCTGGACCTGCTGGTGAAGTGCGAGAACAAGATCCAGACCCGAAT
CAAGATCGGTCTCAACTCCAAGATGCCGTCCAGGTTCCCGCCCGTCGTGT
TCTACACTCCCAAG
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