mRNA_L-elsbetiae_contig19403.5755.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19403.5755.1
Unique NamemRNA_L-elsbetiae_contig19403.5755.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19403.5755.1 vs. uniprot
Match: D7FSZ0_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ0_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 8.000e-49
Identity = 90/130 (69.23%), Postives = 96/130 (73.85%), Query Frame = 2
Query:    2 ADSSVDTSLSGTTLVSVCVRGSKLVLTNVGDSRATLGRRRAAAGGXXXXXXXXXXXXXXXXXXXXXXXXKKGGSLVAQALTEDHKPDIPVEKERILRAGGRVFAIEYSDGVDGPPRVWLKDVDVPGLAMS 391
            ADSS+DTS+SGTTLVSVCVRG+KL+LTNVGDSRATLGRRR    G                          GGSLVAQALTEDHKPDIP EKERI+RAGGRVF+IEYSDGVDGPPRVWL D D PGLAMS
Sbjct:   93 ADSSIDTSMSGTTLVSVCVRGTKLILTNVGDSRATLGRRRLRGEGGSANDG--------------------GGSLVAQALTEDHKPDIPAEKERIVRAGGRVFSIEYSDGVDGPPRVWLADKDTPGLAMS 202          
BLAST of mRNA_L-elsbetiae_contig19403.5755.1 vs. uniprot
Match: A0A835ZAZ3_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ3_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.020e-32
Identity = 67/130 (51.54%), Postives = 81/130 (62.31%), Query Frame = 2
Query:    2 ADSSVDTSLSGTTLVSVCVRGSKLVLTNVGDSRATLGRRRAAAGGXXXXXXXXXXXXXXXXXXXXXXXXKKGGSLVAQALTEDHKPDIPVEKERILRAGGRVFAIEYSDGVDGPPRVWLKDVDVPGLAMS 391
            AD SVDT  SG+TLV+ C+RGS + + NVGDSRA LG ++                               GG+LVA+ L+ DHKPD   E+ERIL AGGRVFA+EY DG+DGPPRVWL  +DVPGLAMS
Sbjct:  183 ADHSVDTDFSGSTLVAACIRGSSITVANVGDSRAVLGIQQVP-----------------------------GGALVAEPLSVDHKPDAEAERERILAAGGRVFAVEYEDGLDGPPRVWLGHMDVPGLAMS 283          
BLAST of mRNA_L-elsbetiae_contig19403.5755.1 vs. uniprot
Match: B8BV57_THAPS (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BV57_THAPS)

HSP 1 Score: 113 bits (282), Expect = 5.890e-29
Identity = 61/126 (48.41%), Postives = 70/126 (55.56%), Query Frame = 2
Query:   14 VDTSLSGTTLVSVCVRGSKLVLTNVGDSRATLGRRRAAAGGXXXXXXXXXXXXXXXXXXXXXXXXKKGGSLVAQALTEDHKPDIPVEKERILRAGGRVFAIEYSDGVDGPPRVWLKDVDVPGLAMS 391
            +DT  SGTTL    +RG+KL   N+GDSR  LG                                  GG L A+  T DHKPD P EKERI+ AGGRVFA+EY DG+DGPPRVWL  +DVPGLAMS
Sbjct:    1 IDTEFSGTTLSMAIIRGNKLTGVNIGDSRVILGLESG------------------------------GGKLEAEEFTHDHKPDSPGEKERIIAAGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMS 96          
BLAST of mRNA_L-elsbetiae_contig19403.5755.1 vs. uniprot
Match: F0XW26_AURAN (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW26_AURAN)

HSP 1 Score: 110 bits (276), Expect = 8.800e-28
Identity = 61/126 (48.41%), Postives = 74/126 (58.73%), Query Frame = 2
Query:   14 VDTSLSGTTLVSVCVRGSKLVLTNVGDSRATLGRRRAAAGGXXXXXXXXXXXXXXXXXXXXXXXXKKGGSLVAQALTEDHKPDIPVEKERILRAGGRVFAIEYSDGVDGPPRVWLKDVDVPGLAMS 391
            VDT  SG+T V   +RG  L+++NVGDSR TLG                                +  G++VA+ ++ DHKPD P EK RIL AGGRVFA+EY DGVDGPPRVWL  +DVPGLAMS
Sbjct:   58 VDTEFSGSTYVFAALRGGALLVSNVGDSRVTLG-------------------------------VEVDGAIVARPVSIDHKPDAPAEKARILGAGGRVFAVEYDDGVDGPPRVWLGHMDVPGLAMS 152          
BLAST of mRNA_L-elsbetiae_contig19403.5755.1 vs. uniprot
Match: A0A7S1FYJ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYJ8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 8.640e-27
Identity = 61/126 (48.41%), Postives = 73/126 (57.94%), Query Frame = 2
Query:   14 VDTSLSGTTLVSVCVRGSKLVLTNVGDSRATLGRRRAAAGGXXXXXXXXXXXXXXXXXXXXXXXXKKGGSLVAQALTEDHKPDIPVEKERILRAGGRVFAIEYSDGVDGPPRVWLKDVDVPGLAMS 391
            ++T+ SGTTL  V VRG  +   N+GDSRA +G+    AG                            G   A+  T DHKPD P EKERIL AGGRVFA+EY DG+DGPPRVWL ++DVPGLAMS
Sbjct:  166 INTNFSGTTLTMVIVRGDHITGVNIGDSRAVIGK----AG--------------------------PDGKFYAEEFTHDHKPDSPGEKERILAAGGRVFAVEYDDGIDGPPRVWLAEMDVPGLAMS 261          
BLAST of mRNA_L-elsbetiae_contig19403.5755.1 vs. uniprot
Match: A0A7S0BX79_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX79_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.140e-26
Identity = 58/126 (46.03%), Postives = 72/126 (57.14%), Query Frame = 2
Query:   14 VDTSLSGTTLVSVCVRGSKLVLTNVGDSRATLGRRRAAAGGXXXXXXXXXXXXXXXXXXXXXXXXKKGGSLVAQALTEDHKPDIPVEKERILRAGGRVFAIEYSDGVDGPPRVWLKDVDVPGLAMS 391
            +DT  SGTTL    +RGS++   N+GDSR  +G+                                  G ++A+ LT DHKPD P EKERIL +GGRVFA+EY DG+DGPPRVWL  +DVPGLAMS
Sbjct:  156 IDTEFSGTTLSMAVIRGSRIYGVNIGDSRVIIGKDDGT------------------------------GKIIAEDLTFDHKPDCPEEKERILASGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMS 251          
BLAST of mRNA_L-elsbetiae_contig19403.5755.1 vs. uniprot
Match: B7FSA5_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSA5_PHATC)

HSP 1 Score: 108 bits (269), Expect = 3.870e-26
Identity = 57/126 (45.24%), Postives = 69/126 (54.76%), Query Frame = 2
Query:   14 VDTSLSGTTLVSVCVRGSKLVLTNVGDSRATLGRRRAAAGGXXXXXXXXXXXXXXXXXXXXXXXXKKGGSLVAQALTEDHKPDIPVEKERILRAGGRVFAIEYSDGVDGPPRVWLKDVDVPGLAMS 391
            +D+  SGTTL    +RG+ L   N+GDSR  LG+                                  G+  AQ +T DHKPD P EKERIL  GGRVFA+EY DG+DGPPRVWL  +D+PGLAMS
Sbjct:   91 IDSEFSGTTLSMAIIRGNHLTGVNIGDSRVILGKEETP------------------------------GNFTAQDITFDHKPDSPAEKERILGCGGRVFAVEYDDGIDGPPRVWLGHMDIPGLAMS 186          
BLAST of mRNA_L-elsbetiae_contig19403.5755.1 vs. uniprot
Match: A0A7R9UEX3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEX3_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.670e-26
Identity = 59/130 (45.38%), Postives = 75/130 (57.69%), Query Frame = 2
Query:    2 ADSSVDTSLSGTTLVSVCVRGSKLVLTNVGDSRATLGRRRAAAGGXXXXXXXXXXXXXXXXXXXXXXXXKKGGSLVAQALTEDHKPDIPVEKERILRAGGRVFAIEYSDGVDGPPRVWLKDVDVPGLAMS 391
            AD  +D   SGTTLV   +RG+ L + NVGDSR T+G R+  +                               L A+ ++ DHKPD+P EKERI R GGRVFA++Y DG+DGP RVWL D+D+PGLAMS
Sbjct:  176 ADPGIDCEFSGTTLVMGIIRGNTLTVANVGDSRLTMGVRQEGS-----------------------------DKLNAEPVSLDHKPDLPSEKERIERIGGRVFAVKYDDGIDGPARVWLADMDIPGLAMS 276          
BLAST of mRNA_L-elsbetiae_contig19403.5755.1 vs. uniprot
Match: A0A812TV61_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TV61_SYMMI)

HSP 1 Score: 107 bits (266), Expect = 2.460e-25
Identity = 57/129 (44.19%), Postives = 70/129 (54.26%), Query Frame = 2
Query:    5 DSSVDTSLSGTTLVSVCVRGSKLVLTNVGDSRATLGRRRAAAGGXXXXXXXXXXXXXXXXXXXXXXXXKKGGSLVAQALTEDHKPDIPVEKERILRAGGRVFAIEYSDGVDGPPRVWLKDVDVPGLAMS 391
            D +++T  SGTT     +RG+     N+GDSR+T+G R  +                              G +   ALT DHKPD+P EK RI   GGRVFA+EY DGVDGPPRVWL  +DVPGLAMS
Sbjct:  130 DMAIETDFSGTTFTCCVIRGNTCTCANIGDSRSTIGYRNDS------------------------------GGITGIALTADHKPDLPAEKARIEAKGGRVFAVEYDDGVDGPPRVWLGHMDVPGLAMS 228          
BLAST of mRNA_L-elsbetiae_contig19403.5755.1 vs. uniprot
Match: A0A7S2CUC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUC4_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.900e-25
Identity = 57/121 (47.11%), Postives = 70/121 (57.85%), Query Frame = 2
Query:   29 SGTTLVSVCVRGSKLVLTNVGDSRATLGRRRAAAGGXXXXXXXXXXXXXXXXXXXXXXXXKKGGSLVAQALTEDHKPDIPVEKERILRAGGRVFAIEYSDGVDGPPRVWLKDVDVPGLAMS 391
            SGTT V V +RG++L   NVGDSR T G R                               + GS V + +TED KPD P EKERIL AGGRVFA++Y DG+DGP RVWL ++D+PGLAM+
Sbjct:    6 SGTTFVCVLIRGNELWSGNVGDSRCTAGDRA------------------------------EDGSYVFRTITEDQKPDSPGEKERILAAGGRVFAVQYDDGIDGPQRVWLGNMDIPGLAMA 96          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19403.5755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSZ0_ECTSI8.000e-4969.23PPM-type phosphatase domain-containing protein n=1... [more]
A0A835ZAZ3_9STRA4.020e-3251.54Phosphatase 2C-like domain-containing protein n=1 ... [more]
B8BV57_THAPS5.890e-2948.41PPM-type phosphatase domain-containing protein (Fr... [more]
F0XW26_AURAN8.800e-2848.41PPM-type phosphatase domain-containing protein (Fr... [more]
A0A7S1FYJ8_9STRA8.640e-2748.41Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S0BX79_9STRA1.140e-2646.03Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B7FSA5_PHATC3.870e-2645.24Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A7R9UEX3_9STRA6.670e-2645.38Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A812TV61_SYMMI2.460e-2544.19Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A7S2CUC4_9STRA3.900e-2547.11Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19403contigL-elsbetiae_contig19403:1369..2536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.100011-CDS-L-elsbetiae_contig19403:1369..14881622815805.100011-CDS-L-elsbetiae_contig19403:1369..1488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19403 1370..1488 -
1691683113.994926-CDS-L-elsbetiae_contig19403:1369..14881691683113.994926-CDS-L-elsbetiae_contig19403:1369..1488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19403 1370..1488 -
1622815805.1138203-CDS-L-elsbetiae_contig19403:2262..25361622815805.1138203-CDS-L-elsbetiae_contig19403:2262..2536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19403 2263..2536 -
1691683114.004651-CDS-L-elsbetiae_contig19403:2262..25361691683114.004651-CDS-L-elsbetiae_contig19403:2262..2536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19403 2263..2536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19403.5755.1prot_L-elsbetiae_contig19403.5755.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19403 1370..2536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19403.5755.1

>prot_L-elsbetiae_contig19403.5755.1 ID=prot_L-elsbetiae_contig19403.5755.1|Name=mRNA_L-elsbetiae_contig19403.5755.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
SRLLRGHFFERHDASVGVREGEQARAYQRRRLSSHPGQAARGGGGGRRRQ
RGGGGGGGGGGEGEGEGEGEEGGLACCAGADRGPQARHSCGEGAHPQGRG
QGVRDRVLRRGGRSPSGLAQGRGRAWPGDVE
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mRNA from alignment at L-elsbetiae_contig19403:1369..2536-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19403.5755.1 ID=mRNA_L-elsbetiae_contig19403.5755.1|Name=mRNA_L-elsbetiae_contig19403.5755.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1168bp|location=Sequence derived from alignment at L-elsbetiae_contig19403:1369..2536- (Laminarionema elsbetiae ELsaHSoW15)
AGCCGACTCCTCCGTGGACACTTCTTTGAGCGGCACGACGCTAGTGTCGG TGTGCGTGAGGGGGAGCAAGCTCGTGCTTACCAACGTCGGCGACTCTCGA GCCACCCTGGGCAGGCGGCGCGCGGCGGCGGGGGGGGACGGAGACGGCAA CGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGAAGGGGAAGGGGAAGG GGAAGGGGAAGAAGGGGGGCTCGCTTGTTGCGCAGGCGCTGACCGAGGAC CACAAGCCAGACATTCCTGTGGAGGTGTGATATTTCGGAGTGTTTCTGTT CTTGGTGTCTACTGTTGTTGTTGTTGTTATTATCTATTGTTGTTGCTGTT ATCTATTGTTGTTGCTGTTGTTATCTATTGTTGTTGCTGTTTGTTGTTAT CTATTGTTGTTGCTGTTGTTGCTGTTTGTTGGTATCTATTGTTGTTGCTG TTGTTGCTGTTTGTGGTTACTATTGTTGTTGCTGTTGTTTTCTATGTTGT TGCTGTTGTTATCTATTGTTGTTGTTGTTGCTGTTGTTGTTATCTATTGT TGTTGCTGTTGTTGCTGTTTGTGTTGTCGTTGTTGTCGATGTTGCTGCTG CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTTTTTTTTTATTGTTC TTCATATTTATTTCCAGTGCTCGATGGGCCCCTTGCCATATGTAGTGACG TAAGAGAGCAATGTCCGGTACATACGCTACTAGTTTATTTATTTTGGTCG ATTGTTTCACTAGGCGGCTGGAATCCTAGGAATTTCTGGTCGTTTGATAA TTTAGGAGGTGAACATATTTGGCAAATTATATACCTGGTTACGTATCGCC TTCATTTTTTATTTCTAGGCAAAATCGACCCCCCCCCCCCCCCCCCCCCC CCCCCCCACCCCGCACACCAGCAACGCGGCCACGCCACCGCCCCCGTCCC AGAGCACACCCGACCGGCTCGCGCCTCCGTNNNNNNNNNNTCCGCCGCGA TTCGGGTCCGCCCCTGCTTTGCTGCCCCCCCCCCCCCCCCCCGTGCAGAA GGAGCGCATCCTCAGGGCCGGGGGCAGGGTGTTCGCGATCGAGTACTCCG ACGGGGTGGACGGTCCCCCTCGGGTCTGGCTCAAGGACGTGGACGTGCCT GGCCTGGCGATGTCGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19403:1369..2536-

>mRNA_L-elsbetiae_contig19403.5755.1 ID=mRNA_L-elsbetiae_contig19403.5755.1|Name=mRNA_L-elsbetiae_contig19403.5755.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig19403:1369..2536- (Laminarionema elsbetiae ELsaHSoW15)
AGCCGACTCCTCCGTGGACACTTCTTTGAGCGGCACGACGCTAGTGTCGG
TGTGCGTGAGGGGGAGCAAGCTCGTGCTTACCAACGTCGGCGACTCTCGA
GCCACCCTGGGCAGGCGGCGCGCGGCGGCGGGGGGGGACGGAGACGGCAA
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGAAGGGGAAGGGGAAGG
GGAAGGGGAAGAAGGGGGGCTCGCTTGTTGCGCAGGCGCTGACCGAGGAC
CACAAGCCAGACATTCCTGTGGAGAGCCGACTCCTCCGTGGACACTTCTT
TGAGCGGCACGACGCTAGTGTCGGTGTGCGTGAGGGGGAGCAAGCTCGTG
CTTACCAACGTCGGCGACTCTCGAGCCACCCTGGGCAGGCGGCGCGCGGC
GGCGGGGGGGGACGGAGACGGCAACGGGGGGGGGGGGGGGGGGGGGGGGG
GGGAGGGGAAGGGGAAGGGGAAGGGGAAGGGGAAGAAGGGGGGCTCGCTT
GTTGCGCAGGCGCTGACCGAGGACCACAAGCCAGACATTCCTGTGGAGAA
GGAGCGCATCCTCAGGGCCGGGGGCAGGGTGTTCGCGATCGAGTACTCCG
ACGGGGTGGACGGTCCCCCTCGGGTCTGGCTCAAGGACGTGGACGTGCCT
GGCCTGGCGATGTCGAGAAGGAGCGCATCCTCAGGGCCGGGGGCAGGGTG
TTCGCGATCGAGTACTCCGACGGGGTGGACGGTCCCCCTCGGGTCTGGCT
CAAGGACGTGGACGTGCCTGGCCTGGCGATGTCGAG
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