mRNA_L-elsbetiae_contig19361.5736.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19361.5736.1
Unique NamemRNA_L-elsbetiae_contig19361.5736.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19361.5736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19361contigL-elsbetiae_contig19361:1853..2527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size329
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.0383224-CDS-L-elsbetiae_contig19361:1852..20761622815803.0383224-CDS-L-elsbetiae_contig19361:1852..2076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19361 1853..2076 -
1691683112.6235993-CDS-L-elsbetiae_contig19361:1852..20761691683112.6235993-CDS-L-elsbetiae_contig19361:1852..2076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19361 1853..2076 -
1622815803.0518632-CDS-L-elsbetiae_contig19361:2424..25271622815803.0518632-CDS-L-elsbetiae_contig19361:2424..2527Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19361 2425..2527 -
1691683112.6343598-CDS-L-elsbetiae_contig19361:2424..25271691683112.6343598-CDS-L-elsbetiae_contig19361:2424..2527Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19361 2425..2527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19361.5736.1prot_L-elsbetiae_contig19361.5736.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19361 1853..2527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19361.5736.1

>prot_L-elsbetiae_contig19361.5736.1 ID=prot_L-elsbetiae_contig19361.5736.1|Name=mRNA_L-elsbetiae_contig19361.5736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
VFAWETCSLCSPETGGLGAAATGRLEVVDVLQGRGGHPSAVVLPPSKRRA
PVHLRNSSDYRQQHSFPFARQDLHGGTREIRKIAAPISRPLLRGERVCLN
FVPGTCVGP
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mRNA from alignment at L-elsbetiae_contig19361:1853..2527-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19361.5736.1 ID=mRNA_L-elsbetiae_contig19361.5736.1|Name=mRNA_L-elsbetiae_contig19361.5736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=675bp|location=Sequence derived from alignment at L-elsbetiae_contig19361:1853..2527- (Laminarionema elsbetiae ELsaHSoW15)
GTTTTTGCTTGGGAAACTTGCAGCCTATGCAGCCCTGAGACAGGAGGGCT
GGGCGCGGCGGCGACTGGCCGTCTCGAGGTGGTCGACGTGCTGCAAGGTA
GAGGTGCGTTCGAAGGTCGCGTTTCGCTAGTTTGAACAGCAGGTATGATA
GGTTTGTATCGTCCTCCTGCACCGTGCTCACGGAAGCGTTGCACAGCAGG
TCATTGCACGGAGCAGTACATTGATGCGGTGCCACGAAAGAAGCATCTCG
CTCGGAAACGGTTGATGCTTACCTATGCTCCCGGCGGTGCGTCATGTTTT
GTAGTCCGGCCAGACAGTCGCGAAATAGGCACAGCAAAATGTAGCTGCTG
ACCCCGTTTGTTGATGAACCGCAAGATTGGATTGGCGTTGGTTCCGACTT
AACTGGAATCTTGTGGCGGCGTGCGACTTCTGCTACCCTCCCTTTTTGCA
GGTGGGCATCCCAGTGCTGTTGTCCTCCCCCCAAGTAAGAGACGTGCACC
CGTGCACTTACGAAATAGTTCCGACTATCGACAACAACATAGCTTTCCAT
TTGCCAGGCAAGATCTTCACGGAGGCACACGAGAGATTCGCAAAATTGCA
GCACCAATATCCCGTCCTTTGCTCAGAGGTGAACGCGTGTGCTTAAATTT
TGTGCCTGGGACCTGTGTCGGTCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19361:1853..2527-

>mRNA_L-elsbetiae_contig19361.5736.1 ID=mRNA_L-elsbetiae_contig19361.5736.1|Name=mRNA_L-elsbetiae_contig19361.5736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig19361:1853..2527- (Laminarionema elsbetiae ELsaHSoW15)
GTTTTTGCTTGGGAAACTTGCAGCCTATGCAGCCCTGAGACAGGAGGGCT
GGGCGCGGCGGCGACTGGCCGTCTCGAGGTGGTCGACGTGCTGCAAGGTA
GAGGTTTTTGCTTGGGAAACTTGCAGCCTATGCAGCCCTGAGACAGGAGG
GCTGGGCGCGGCGGCGACTGGCCGTCTCGAGGTGGTCGACGTGCTGCAAG
GTAGAGGTGGGCATCCCAGTGCTGTTGTCCTCCCCCCAAGTAAGAGACGT
GCACCCGTGCACTTACGAAATAGTTCCGACTATCGACAACAACATAGCTT
TCCATTTGCCAGGCAAGATCTTCACGGAGGCACACGAGAGATTCGCAAAA
TTGCAGCACCAATATCCCGTCCTTTGCTCAGAGGTGAACGCGTGTGCTTA
AATTTTGTGCCTGGGACCTGTGTCGGTCCAGTGGGCATCCCAGTGCTGTT
GTCCTCCCCCCAAGTAAGAGACGTGCACCCGTGCACTTACGAAATAGTTC
CGACTATCGACAACAACATAGCTTTCCATTTGCCAGGCAAGATCTTCACG
GAGGCACACGAGAGATTCGCAAAATTGCAGCACCAATATCCCGTCCTTTG
CTCAGAGGTGAACGCGTGTGCTTAAATTTTGTGCCTGGGACCTGTGTCGG
TCCA
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