mRNA_L-elsbetiae_contig1936.5733.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1936.5733.1
Unique NamemRNA_L-elsbetiae_contig1936.5733.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1936.5733.1 vs. uniprot
Match: A0A6H5JGC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 7.970e-13
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:   11 PIVAEMVTEWTPLTRIREEHAPMPAPETKCMQV 109
            P++AEMVTEWTPLTRIREEHAPMPAPETKCMQV
Sbjct:  430 PVLAEMVTEWTPLTRIREEHAPMPAPETKCMQV 462
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BLAST of mRNA_L-elsbetiae_contig1936.5733.1 vs. uniprot
Match: D7G7N3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7N3_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 9.070e-9
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 2 
Query:  140 MCEVYERLSGICVQVHVDDRKGEIRFAPVAEI 235
            MCEVYERLS +CVQVHVDD  GEI FAPVAEI
Sbjct:    1 MCEVYERLSTVCVQVHVDDNNGEISFAPVAEI 32
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1936.5733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGC6_9PHAE7.970e-1393.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7N3_ECTSI9.070e-984.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1936contigL-elsbetiae_contig1936:8365..10952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size237
Cds size237
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1936.5733.1prot_L-elsbetiae_contig1936.5733.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1936 8365..10952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815802.8711796-CDS-L-elsbetiae_contig1936:8364..84201622815802.8711796-CDS-L-elsbetiae_contig1936:8364..8420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1936 8365..8420 -
1691683112.5348506-CDS-L-elsbetiae_contig1936:8364..84201691683112.5348506-CDS-L-elsbetiae_contig1936:8364..8420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1936 8365..8420 -
1622815802.882176-CDS-L-elsbetiae_contig1936:10215..102901622815802.882176-CDS-L-elsbetiae_contig1936:10215..10290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1936 10216..10290 -
1691683112.5445127-CDS-L-elsbetiae_contig1936:10215..102901691683112.5445127-CDS-L-elsbetiae_contig1936:10215..10290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1936 10216..10290 -
1622815802.8919063-CDS-L-elsbetiae_contig1936:10846..109521622815802.8919063-CDS-L-elsbetiae_contig1936:10846..10952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1936 10847..10952 -
1691683112.5530117-CDS-L-elsbetiae_contig1936:10846..109521691683112.5530117-CDS-L-elsbetiae_contig1936:10846..10952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1936 10847..10952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1936.5733.1

>prot_L-elsbetiae_contig1936.5733.1 ID=prot_L-elsbetiae_contig1936.5733.1|Name=mRNA_L-elsbetiae_contig1936.5733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
QEGPDRSRDGDGVDAADADSRGARADAGSRDQVHAGFRRHPQLQDQDVRG
LRTAQRNLCAGARRRQEGRDSLRAGGGD*
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mRNA from alignment at L-elsbetiae_contig1936:8365..10952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1936.5733.1 ID=mRNA_L-elsbetiae_contig1936.5733.1|Name=mRNA_L-elsbetiae_contig1936.5733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2588bp|location=Sequence derived from alignment at L-elsbetiae_contig1936:8365..10952- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAAGGACCCGATCGTAGCCGAGATGGTGACGGAGTGGACGCCGCTGA
CGCGGATTCGAGAGGAGCACGCGCCGATGCCGGCTCCCGAGACCAAGTGC
ATGCAGGTATGTATGTATTTTGGGAGACTGTTTTTTTTTTCTCTTGCGGG
TGCCCACGCGTTTACCGTAATCATGCGGGTTTTCGCACCCCTGTGTTGGC
GTTTTTCTATAGCGTATTTCTCCACAACCAGGAGGGTACCACTGCCGAAA
AGGGTGGTTTTCGAAACGTCTCATTGGGGGCTTGCTTTTCAGAGAGGTTA
TCAGTTTGTGTTCGCACCCTCCTGGTTGTGGAGAAATACGCTTTAGGAAA
ATGCTAACATGGGGGTGCGAACCCCTTTGCATGATTACGGTAGGCTTCGC
TTCTTGACCGTCCTCGTCGCCAGCGCTACTGTCCATGCAGTCGAGGGCCT
CGATCTCCTTAGTGCTAGTCCCGCTGATTGCCTTGCTGGGTGTAGTCTTC
GTAGCAAGCTTCTTGTTCTGCACACCGATCCTCCTGACGTTGCTGGTAGC
AGTAGATACTACAGAGCCGTAGCTCTTGGAGGTAGCGTTGTTCTTGATGA
TGGCCTCGCCACTCTATAACATGTACATAATAACACCCCCCCCCCCAACG
ACGACCCGGCAGGTTTTCGGCGGCATCCACAACTACAAGACCAAGATGTG
CGAGGTCTACGAACGGCTCAGCGGAATCTGTGTGCAGGTGAAGTTTTAAG
AGGGAGAGGGGGAAGCGAAGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGACAAAAAAGTCGAACGGTTACACGGCACCCATTTAATTTAGTCTTGA
CTTACTAAGATGATAGACATTTCTATGTTGCCCGTGGGCAGGGGGGGGGG
GGGGGGGGGGTTGGGGGGGGGGGGAAAACGGGGCGGCTTTTGGGGGGAGG
GGAGAAAAAAAATGAAAGGTGGGGGGCCCGGTGCGCGGNNNNNNNNNNAA
AAAGGGGGCCGGTGTTAAGGGCCCCCTTTTTTTTTTGTTTTTGTTTTAAG
AGGGGGGATGGTTTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGCTTTGGCTGGACGGGAAAATCGTGACCATTTTGTGGGATCGTGAAC
ATACATATGAATGTCCGGGGCCCCGTAGCAGTGCTTGCTTGTTTTGAGCT
ATTTAGGTATGTATGTACAGGGCAGAGGCACCGAAGGAGGAGGTCCCCCC
TCCTGTGTGACCCCGGTTGGGTTGTCTAGCTAGTCGTAGTGGAGGAAGGG
GGGGCCAGTGGGGCAGGCGACGAGTAAGCCAATAATGGCAACAGAAGAAC
AAAATATAGGGTACTTGAAGTAAATGTTGATGCACCCCTCTTGTGTGACT
GATGACTGAGCCCCGGCTGCCTCCCTCTGTTTGCACAGAGAACGTACGCC
GAAACGTATCATTTCGTGTGCGATATGTAGACACAGAAAAAAAAAAAAAA
AAAAAAAGCAGACAACGAAACAACCCCTCAGGGAACCCCTACAAATTACA
CTTACTCCCCCCCCAAAAGGGGGGGGAGAACCACCNNNNNNNNNNATAAC
TAACCCCCGACAGACCACCTCTGTTGGAAAAAAGAAAAAACCCCAAAACG
AATAATTTCGTGTGCAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CGCAGACAACGAAACATGTGTTTAGGAAACCTGAACAAGGTACATAGGAG
GCGCCAGAATACCGTAGGTGACACAAGATACGACACCCCCTGGACCAACT
TTTTCACAGCTCCATTACTCCGTAGCCAAGAGGGGTGCCAGCACCAACCG
ATACATTTTCGGACAGCCCTCGACTACCGTGTAGATCTTTCCAACGCCAC
CACCTCCTCTCGCCACTGCAGTCACTGTTCTTGCTGGGGAGGGATCGAGC
CTCGAAAGTCTGTCCAGAGGGGGGGGGGGGGGGGGGGGGGGATTTTTGCC
CCCCGCGGGGGGGGGGGGGGGGGGGGGAAAAACACCCCCCCCCACCCCCC
CCCCCCTTGCGTCCCCCNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCGCC
CTCGCGCGCGGGTGGGGGGGGGGGGGGGGGGGGGGGGGCGGAGCGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGTATATTGTGCCACCTGC
GGACGGTAGATGGGACGAGGAAAACGCACACACGCACAACACGCAGCCTT
TGCTGTCCCCCGGCAGCCCACGGCTCTGGCTTTGTTTGCAGCGGCCCGGA
CAGGCCCGTCCCTTTTGCCTCCCCGCGAATGATGCAAGCGCTTTTTTCCC
GTCGTCTTGACATTTATTTATCTTTCGTCCACGCGATTCGATCTTGTATA
CGGCAGTCTAATTCGTTTTGCTTTTTTTCTTGTGTTTTATATCTTACTAC
CCCCGCCTTCTCTCCCCGCCCGCCGCTTTTCTTGCTCTTTTTCGACGGCG
ATTGGTGCGGCCGACACACGGAACGGCGGTAGGTGCACGTCGACGACAGG
AAGGGAGAGATTCGCTTCGCGCCGGTGGCGGAGATTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1936:8365..10952-

>mRNA_L-elsbetiae_contig1936.5733.1 ID=mRNA_L-elsbetiae_contig1936.5733.1|Name=mRNA_L-elsbetiae_contig1936.5733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig1936:8365..10952- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAAGGACCCGATCGTAGCCGAGATGGTGACGGAGTGGACGCCGCTGA
CGCGGATTCGAGAGGAGCACGCGCCGATGCCGGCTCCCGAGACCAAGTGC
ATGCAGCAGGAAGGACCCGATCGTAGCCGAGATGGTGACGGAGTGGACGC
CGCTGACGCGGATTCGAGAGGAGCACGCGCCGATGCCGGCTCCCGAGACC
AAGTGCATGCAGGTTTTCGGCGGCATCCACAACTACAAGACCAAGATGTG
CGAGGTCTACGAACGGCTCAGCGGAATCTGTGTGCAGGTTTTCGGCGGCA
TCCACAACTACAAGACCAAGATGTGCGAGGTCTACGAACGGCTCAGCGGA
ATCTGTGTGCAGGTGCACGTCGACGACAGGAAGGGAGAGATTCGCTTCGC
GCCGGTGGCGGAGATTAGGTGCACGTCGACGACAGGAAGGGAGAGATTCG
CTTCGCGCCGGTGGCGGAGATTAG
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