mRNA_L-elsbetiae_contig1931.5719.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1931.5719.1
Unique NamemRNA_L-elsbetiae_contig1931.5719.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1931.5719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1931contigL-elsbetiae_contig1931:20199..21438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size560
Cds size552
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1931.5719.1prot_L-elsbetiae_contig1931.5719.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1931 20199..21431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815801.507395-CDS-L-elsbetiae_contig1931:20198..206931622815801.507395-CDS-L-elsbetiae_contig1931:20198..20693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1931 20199..20693 -
1691683111.6767075-CDS-L-elsbetiae_contig1931:20198..206931691683111.6767075-CDS-L-elsbetiae_contig1931:20198..20693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1931 20199..20693 -
1622815801.5194383-CDS-L-elsbetiae_contig1931:21374..214311622815801.5194383-CDS-L-elsbetiae_contig1931:21374..21431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1931 21375..21431 -
1691683111.6873314-CDS-L-elsbetiae_contig1931:21374..214311691683111.6873314-CDS-L-elsbetiae_contig1931:21374..21431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1931 21375..21431 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815801.5290158-UTR-L-elsbetiae_contig1931:21431..214381622815801.5290158-UTR-L-elsbetiae_contig1931:21431..21438Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1931 21432..21438 -
1691683111.697509-UTR-L-elsbetiae_contig1931:21431..214381691683111.697509-UTR-L-elsbetiae_contig1931:21431..21438Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1931 21432..21438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1931.5719.1

>prot_L-elsbetiae_contig1931.5719.1 ID=prot_L-elsbetiae_contig1931.5719.1|Name=mRNA_L-elsbetiae_contig1931.5719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
MVTAVSALVVLLVLFSLCIMINCIAKRKSKKAAGRAAAGDGGDNPNSMRY
DSFHGSDNTEFTPSVGASSGGRGGGSGSRLKFFGAGQQGGDKHAAAADSR
SSGGTGGARKVIGLSRASPSPRGAVGTALPVIGGGPGLRGGGSGSGSGGG
GGRGKGQRSTASPLWGLPRQERENGGTREPRPAS
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mRNA from alignment at L-elsbetiae_contig1931:20199..21438-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1931.5719.1 ID=mRNA_L-elsbetiae_contig1931.5719.1|Name=mRNA_L-elsbetiae_contig1931.5719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1240bp|location=Sequence derived from alignment at L-elsbetiae_contig1931:20199..21438- (Laminarionema elsbetiae ELsaHSoW15)
TTTCTCGATGGTGACCGCTGTTTCAGCCCTGGTGGTGCTCCTCGTCCTGT
TCTCCCTGTGCATCGTGAGTCAAGAGTCTGGTGTCGACCGTTTTTACTTC
CGCCTTGGCGTTGGTCGATCGCGACCCATGACCGTGTTGGGGACAGGATC
GCCTTCGCACATAATTCCTGTCTGTACGTAAGAAGTAATACCGCAGGTGA
CATAAGATAAGACACCCCCTGCACCGATTTTCAAAGCTCAAGTACTCCAC
AGCAAGCCGAGCGTCAGTCCCGAAAAGGGCGGCGTTGGAAAAATGTCGTC
GAGAGCTTTCCGAAAATGTGGCGTTTGTGGTTAGAATTGTATTCGTTGCG
GAGTAACCAAGCTTTCAATATCGGTCCAGGGGGTGTCTTATCTTATGTCA
CCTACGGTAGACAGGGTTTCCGTAACCGTAACTGTAACCGTAACCGTAAC
CGACCCCCCATTAGCCGTTTCCATGCTTTTTATCCCACATGATTTCTTCC
AGTAAAACGTACGAAGGCTACTGTGGCGTGTACAAGGAAGTGTAACGCCC
GTGACAATCCTTACGGGAGGGAGCTCGGTTAGTTTGACACCGTTGTTGAG
TCTTGGGGGGGGCGCGTTGTCGGTTCGACGCCGTATTGCCGTTACACCCG
AGCCGTTGCATGACCCCCCGCGCGGCCGGAAAGCCCAAACCGGGCCCAAT
CTAACACGGCACGAAAACGTTCCGAAATTGGTGCCGCCGCAACAGATGAT
CAACTGCATTGCGAAGCGCAAGAGCAAGAAGGCCGCGGGGAGAGCAGCGG
CTGGCGACGGCGGCGACAACCCCAACAGCATGAGGTACGACTCCTTCCAC
GGCTCGGACAACACCGAGTTCACGCCCTCCGTGGGGGCCTCGAGCGGCGG
CCGCGGCGGCGGCAGCGGCAGCAGGCTGAAGTTCTTCGGGGCTGGTCAGC
AAGGAGGGGACAAGCATGCCGCCGCTGCTGACAGCAGGAGCAGTGGCGGC
ACCGGCGGCGCTCGTAAGGTTATCGGCCTGTCGCGGGCGAGCCCGTCGCC
TCGCGGGGCGGTAGGGACCGCGCTCCCTGTCATTGGCGGCGGGCCGGGGC
TAAGGGGCGGCGGCAGCGGCAGCGGCAGCGGCGGCGGCGGCGGCAGAGGA
AAGGGGCAAAGGAGCACCGCGAGTCCGCTGTGGGGCCTGCCGCGCCAAGA
GAGGGAGAACGGAGGAACGAGAGAGCCAAGGCCGGCGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1931:20199..21438-

>mRNA_L-elsbetiae_contig1931.5719.1 ID=mRNA_L-elsbetiae_contig1931.5719.1|Name=mRNA_L-elsbetiae_contig1931.5719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig1931:20199..21438- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGACCGCTGTTTCAGCCCTGGTGGTGCTCCTCGTCCTGTTCTCCCT
GTGCATCATGGTGACCGCTGTTTCAGCCCTGGTGGTGCTCCTCGTCCTGT
TCTCCCTGTGCATCATGATCAACTGCATTGCGAAGCGCAAGAGCAAGAAG
GCCGCGGGGAGAGCAGCGGCTGGCGACGGCGGCGACAACCCCAACAGCAT
GAGGTACGACTCCTTCCACGGCTCGGACAACACCGAGTTCACGCCCTCCG
TGGGGGCCTCGAGCGGCGGCCGCGGCGGCGGCAGCGGCAGCAGGCTGAAG
TTCTTCGGGGCTGGTCAGCAAGGAGGGGACAAGCATGCCGCCGCTGCTGA
CAGCAGGAGCAGTGGCGGCACCGGCGGCGCTCGTAAGGTTATCGGCCTGT
CGCGGGCGAGCCCGTCGCCTCGCGGGGCGGTAGGGACCGCGCTCCCTGTC
ATTGGCGGCGGGCCGGGGCTAAGGGGCGGCGGCAGCGGCAGCGGCAGCGG
CGGCGGCGGCGGCAGAGGAAAGGGGCAAAGGAGCACCGCGAGTCCGCTGT
GGGGCCTGCCGCGCCAAGAGAGGGAGAACGGAGGAACGAGAGAGCCAAGG
CCGGCGAGCATGATCAACTGCATTGCGAAGCGCAAGAGCAAGAAGGCCGC
GGGGAGAGCAGCGGCTGGCGACGGCGGCGACAACCCCAACAGCATGAGGT
ACGACTCCTTCCACGGCTCGGACAACACCGAGTTCACGCCCTCCGTGGGG
GCCTCGAGCGGCGGCCGCGGCGGCGGCAGCGGCAGCAGGCTGAAGTTCTT
CGGGGCTGGTCAGCAAGGAGGGGACAAGCATGCCGCCGCTGCTGACAGCA
GGAGCAGTGGCGGCACCGGCGGCGCTCGTAAGGTTATCGGCCTGTCGCGG
GCGAGCCCGTCGCCTCGCGGGGCGGTAGGGACCGCGCTCCCTGTCATTGG
CGGCGGGCCGGGGCTAAGGGGCGGCGGCAGCGGCAGCGGCAGCGGCGGCG
GCGGCGGCAGAGGAAAGGGGCAAAGGAGCACCGCGAGTCCGCTGTGGGGC
CTGCCGCGCCAAGAGAGGGAGAACGGAGGAACGAGAGAGCCAAGGCCGGC
GAGC
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