mRNA_L-elsbetiae_contig1928.5706.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1928.5706.1
Unique NamemRNA_L-elsbetiae_contig1928.5706.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1928.5706.1 vs. uniprot
Match: A0A6H5JSI8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI8_9PHAE)

HSP 1 Score: 674 bits (1739), Expect = 3.210e-223
Identity = 404/595 (67.90%), Postives = 459/595 (77.14%), Query Frame = 1
Query:  598 SFGNTSIASPGSTPSEQQSAADSTPIVAGVLSAVAGAGLIALAIFLGRRRASRQKTT----PPAPSTHDDDILDQGLEQSPDVRPPAYQTLVA-GSG-DNKPPFQHNVSPHRHTQVEADEADGGGIAPPSAPAEASLDTTQVRSSAEHADNAVKDRDAGLAGDDAAGGSAEKHFAGTAPI-ATASTANMSTTERDEVAQFHQRRRAGD-AASTAGGPKPDEASGRAVPGASSDAGRRNSGGDIGIGHAVLAAAQELALHCQVPGVSEAAAAVCIMANMATDSRDNVRASESRLRLCRTIVLALKRAAKVAEKGEDTIGEVARVLIEEVHEAIYDLVELIQTFHGKNKLSKLFMSTLFKRRQEELDAVVDRAIMRLQLGLQLHVGQDVNAVKAAQEDIKDGLKSVKEEMHLYQRSITEAELESVVEARSIKRRRKLDQVEIPEEHLSMTDELLGKGGFGEVYVADYNGHNAAVKVIHIAHDVGPLDENQRRRETSQRRAFLRELEAMIRLRSDNTVNVYGAVTSLPDRMMLVMELLAGGDLLALLRESKEPFPEEHSRRIIRDICTGMAFLHSKNTVHGDLKSANVLLDGDGRAKV 2358
            SFG TS  SP +TPSEQ SA+ STPIVAG++SAVAG  LI LA+ L RRR S QK T     P P THDDD ++QG E+ PDVRPP+Y  +VA G G D+ P  Q N S   HT  E D  D GGI PPSAPA  +LD  QV+ SAEHA+NA +   A L  D    GSAEK  A T  I AT STAN+ST ERDE++QFHQR R    AA  +G PKP+EASG    GASS A  +NS  DIG+G  VLAAAQELA HCQ+PGVSEAA AVC+MAN+ TDSRDN RAS+SRLR C T+V+ALKRAAKVA+KG DTIG VAR +IE+VH AI+DLV+LI+T+  K KLS+LFMSTLFKRRQEELDAVVD+AIMRLQLGLQL VGQDV AVK                M LYQ S++EA  ESV +AR IKR+RKLD+VEIP E+LS+TDELLGKGGFGEVY+ADYNGHNAA KV++IAHDVG LDENQ++RET +RRAFLRELEAMIRLRS NTVNV+GAVTSLPDRM+LVMELLAGGDLL LLR+SK+  PEE SR IIRDICTGMAFLHSKNTVHGDLKSANVLLD  GRAK+
Sbjct:  184 SFGITSTISPVTTPSEQGSASGSTPIVAGIVSAVAGVALITLAVLLKRRRGSNQKMTLTSAVPVPPTHDDDNVEQGREEPPDVRPPSYPAVVAVGDGNDHSPSHQRNASLFGHTPAEVDAVDSGGIVPPSAPA--ALDG-QVQPSAEHAENAAEGCGARLTSD----GSAEKFVAATTAITATTSTANLSTAERDELSQFHQRERERVVAAPVSGEPKPEEASGGGT-GASSAADHQNSA-DIGLGRVVLAAAQELAHHCQIPGVSEAATAVCMMANLVTDSRDNARASQSRLRQCSTVVMALKRAAKVADKGGDTIGSVARGMIEDVHGAIFDLVQLIKTYQSKTKLSRLFMSTLFKRRQEELDAVVDQAIMRLQLGLQLQVGQDVGAVKDXXXXXXXXXXXXXXGMDLYQLSLSEAASESVAKARRIKRQRKLDRVEIPAEYLSITDELLGKGGFGEVYLADYNGHNAAAKVLYIAHDVGALDENQKQRETRERRAFLRELEAMIRLRSLNTVNVFGAVTSLPDRMVLVMELLAGGDLLTLLRKSKKALPEEQSRLIIRDICTGMAFLHSKNTVHGDLKSANVLLDDIGRAKI 769          
BLAST of mRNA_L-elsbetiae_contig1928.5706.1 vs. uniprot
Match: D7G7F2_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F2_ECTSI)

HSP 1 Score: 602 bits (1552), Expect = 3.700e-192
Identity = 386/603 (64.01%), Postives = 441/603 (73.13%), Query Frame = 1
Query:  568 AASPAPTPAPSFGNTSIASPGSTPSEQQSAADSTPI-VAGVLSAVAGAGLIALAIFLGRRRASRQKTTPPA--PSTHDDDILDQGLEQSPDV-RPPAYQTLVAGSGDNKPP-FQHNVSPHRHT-QVEADEADGGGIAPPSAPAEASLDTTQVRSSAEHADNAVKDRDAGLAGDDAAGGSAEKHFAGTAPIATASTANMSTTERDEVAQFHQRRRAGDAASTAGGPKPDEASGRAVPGASSDAGRRNSGGDIGIGHAVLAAAQELALHCQVPGVSEAAAAVCIMANMATDSRDNVRASESRLRLCRTIVLALKRAAKVAEKGEDTIGEVARVLIEEVHEAIYDLVELIQTFHGKNKLSKLFMSTLFKRRQEELDAVVDRAIMRLQLGLQLHVGQDVNAVKAAQEDIKDGLKSVKEEMHLYQRSITEAELESVVEARSIKRRRKLDQVEIPEEHLSMTDELLGKGGFGEVYVADYNGHNAAVKVIHIAHDVGPLDENQRRRETSQRRAFLRELEAMIRLRSDNTVNVYGAVTSLPDRMMLVMELLAGGDLLALLRESKEPFPEEHSRRIIRDICTGMAFLHSKNTVHGDLKSANVLLDGDGRAKV 2358
            A SP PTPAPS G TS                     VAG++SAVAGA LIALA+FL R              P THDD  ++ G EQ  D+ RPP    +VAG+GD+  P  Q N S  R     EAD  +  GI P   PA ++LD  +V +SAEHA    KD  A LA    + GSAEK  A T+  AT STAN+ST ERDE++QFHQR R  DAA  +G  KP+EAS    PGASS A  +NS  DIG+G AVLAAAQEL  HCQ+PGVSEAA AVC+MA + TD RDN RASESRLR C T+V+ALKRAAKVA+KG DTIGEVAR +IE+VH AI+DLV+LI+T+  KNKLS+LFMSTLFKRRQEEL+AVVD+AIMRLQLGLQL VGQDV AVK       D L SVKE + LYQ S++EA  ESV E R +KR+RKLDQVEIP E+LS+TDELLGKGGFGEVY+ADYNGHNAA KV+HIA  +G LDE Q++RE SQ RAFLRELEAMIRLRS NTVNVYGAVTSLPDRM+LVMELLAGGDLL LLR+SK+  P + SRRIIRDICTGMAFLH KNTVHGDLKSANVLLDGDGRAK+
Sbjct:  451 ATSPIPTPAPSLGVTSXXXXXXXXXXXXXXXXXXXXTVAGIVSAVAGAALIALAVFLRRXXXXXXXXXXXXXXPPTHDDGNVEHGGEQPLDIFRPPYSAVVVAGNGDDMAPSHQDNASLRRKALTTEADGVEREGIVP--LPAASALDG-EVEASAEHA---AKDCRARLA----SAGSAEKLPAATS--ATTSTANLSTAERDELSQFHQRERVADAAPVSGELKPEEAS-SGGPGASSAADDQNSA-DIGLGRAVLAAAQELVHHCQIPGVSEAATAVCMMATLVTDGRDNARASESRLRQCSTVVMALKRAAKVADKGGDTIGEVARGMIEDVHGAIFDLVQLIKTYQSKNKLSRLFMSTLFKRRQEELNAVVDQAIMRLQLGLQLQVGQDVGAVK-------DKLDSVKEGIDLYQLSLSEAASESVAEDRRVKRQRKLDQVEIPAEYLSITDELLGKGGFGEVYLADYNGHNAAAKVLHIAR-MGALDETQKQREASQHRAFLRELEAMIRLRSLNTVNVYGAVTSLPDRMVLVMELLAGGDLLTLLRKSKKALPGQQSRRIIRDICTGMAFLHGKNTVHGDLKSANVLLDGDGRAKI 1031          
BLAST of mRNA_L-elsbetiae_contig1928.5706.1 vs. uniprot
Match: D7FL57_ECTSI (Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL57_ECTSI)

HSP 1 Score: 591 bits (1523), Expect = 4.930e-190
Identity = 380/603 (63.02%), Postives = 435/603 (72.14%), Query Frame = 1
Query:  568 AASPAPTPAPSFGNTSIASPGSTPSEQQSAADST-PIVAGVLSAVAGAGLIALAIFLGRRRASRQKTTPPAPSTHDDDILDQGLEQSPDVRPPAYQ---TLVAGSG-DNKPPFQHNVSPHRHT-QVEADEADGGGIAPPSAPAEASLDTTQVRSSAEHADNAVKDRDAGLAGDDAAGGSAEKHFAGTAPIATASTANMSTTERDEVAQFHQRRRAGDAASTAGGPKPDEASGRAVPGASSDAGRRNSGGDIGIGHAVLAAAQELALHCQVPGVSEAAAAVCIMANMATDSRDNVRASESRLRLCRTIVLALKRAAKVAEKGEDTIGEVARVLIEEVHEAIYDLVELIQTFHGKNKLSKLFMSTLFKRRQEELDAVVDRAIMRLQLGLQLHVGQDVNAVKAAQEDIKDGLKSVKEEMHLYQRSITEAELESVVEARSIKRRRKLDQVEIPEEHLSMTDELLGKGGFGEVYVADYNGHNAAVKVIHIAHDVGPLDENQRRRETSQRRAFLRELEAMIRLRSDNTVNVYGAVTSLPDRMMLVMELLAGGDLLALLRESKEPFPEEHSRRIIRDICTGMAFLHSKNTVHGDLKSANVLLDGDGRAKV 2358
            A SP PTPAPS G TS  SP +             P VAG++SAVAGA LIALA+FL  RRASRQKTT  +                             +VAG+G D  P  Q N S  R    +EAD  D  GI P   PA ++L   +V +SAEHA    KD  A LA    + G AEK  A T   AT STAN+ST ERDE++QFHQR R  DAA  +G  KP+EAS    PGASS A  +NS  DIG+G AV  AAQELA HCQ+PGVSEAA AVC+MAN+ TD RDN RASESRLR C T+V+ALKRAAKVA+KG DTIGEVAR +IE+VH AI+DLV+LI+T+  KNKLS+LFMSTLFKRRQEEL+A+VD+A+MRLQLGLQL VGQDV AVK       D   SVKE + LYQ S++EA  ESV EAR +KR+RKLDQVEIP E+LS+T+ELLGKGGFGEVY+ADYNGHNAA KV+HIA   G LDE Q++RE SQ RAFLRELEAMIRLRS NTVNVYGAVTSLPDRM+LVMELLAGGDLL LLR+SK+  P + SR+IIRDICTGMAFLH KNTVHGDLKSANVLLDGDGRAK+
Sbjct:  273 ATSPPPTPAPSLGVTSTTSPVTXXXXXXXXXXXXXPTVAGIVSAVAGAALIALAVFLRMRRASRQKTTKMSAXXXXXXXXXXXXXXXXXXXXXXXXXXAVVVAGNGNDMAPSHQDNASLCRKALTMEADGVDREGIVP--LPAASAL-AGEVEASAEHA---AKDCRARLA----SAGPAEKLPAAT--TATTSTANLSTAERDELSQFHQRERVEDAAPVSGELKPEEAS-SGGPGASSAADDQNSA-DIGLGRAVFEAAQELAHHCQIPGVSEAATAVCMMANLVTDGRDNARASESRLRQCSTVVMALKRAAKVADKGGDTIGEVARGMIEDVHGAIFDLVQLIKTYQSKNKLSRLFMSTLFKRRQEELNAIVDQAMMRLQLGLQLQVGQDVGAVK-------DKFDSVKEGIDLYQLSLSEAASESVAEARRVKRQRKLDQVEIPAEYLSITNELLGKGGFGEVYLADYNGHNAAAKVLHIA-QTGALDETQKQREASQHRAFLRELEAMIRLRSLNTVNVYGAVTSLPDRMVLVMELLAGGDLLTLLRKSKKALPGQQSRQIIRDICTGMAFLHGKNTVHGDLKSANVLLDGDGRAKI 853          
BLAST of mRNA_L-elsbetiae_contig1928.5706.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 543 bits (1398), Expect = 1.560e-170
Identity = 351/607 (57.83%), Postives = 409/607 (67.38%), Query Frame = 1
Query:  640 SEQQSAADSTPIVAGVLSAVAGAGLIALAIFLGRRRASRQKTT-----PPAPSTHDDDILDQGLEQSPDVRPPAYQTLVA----GSGDNKPPFQHN-VSPHRHTQVEADEADGGGIAPPSAPAEASLDTTQVRSSAEHADNAVKDR-DAGLAGDDAAG--GSAEKHFAGTAPIATASTANMSTTERDEVAQFHQRRRAGDAASTAGGPKPDEASGRA---------VPGA---SSDAGRRNSGGDIGIGHAVLAAAQELALHCQVPGVSEAAAAVCIMANMATDSRDNVRASESRLRLCRTIVLALKRAAKVAEKGEDTIGEVARVLIEEVHEAIYDLVELIQTFHGKNKLSKLFMSTLFKRRQEELDAVVDRAIMRLQLGLQLHVGQDVNAVKAAQEDIKDGLKSVKEEMHLYQR---------SITEAELESVVEARSIKRRRKLDQVEIPEEHLSMTDELLGKGGFGEVYVADYNGHNAAVKVIHIAHDVGPLDENQRRRETSQRRAFLRELEAMIRLRSDNTVNVYGAVTSLPDRMMLVMELLAGGDLLALLRESKEPFPEEHSRRIIRDICTGMAFLHSKNTVHGDLKSANVLLDGDGRAKV 2358
            S + S +DSTPIVAGV+SAVAGA  IALA+   RRR +RQK       PPAP   +   L+QGL   P   PP+Y   +A    G  D  P  QHN  SP      E      G I P SAP    L              AV+DR  AGL G+ +A    SAEK    T   AT STAN+ST ER E+A F QR+   +AA  A G +P  ASG +         V GA   SS A R+NS  D+G+GHAVL AAQELA HCQVPG+SEAAA +CIMAN+ TD+R+N R ++SRLR CR+IV+ALKRA KV  KG DT GEVARVLIE+VH+AI+DLVELI+TF  KNKLSKLF+STLFKRR++ELDAVVDRAI RLQLGLQL +G D+ +VK + +                           +      ESV EARSI+R+RKLDQVEIPE+ L +T +LLGKGGFGEVY+ADYNGHNAA KV++IAHD+G LDENQ++RET QR+ FLRELEAMIRLRS NTVNVYGAVTSL DRM+LVMELL  GDLL LLR S  P PEE SR+II DIC GMAFLH KNTVHGDLKSANVLLDG GRAK+
Sbjct:  362 SSKGSTSDSTPIVAGVISAVAGAAFIALAVLGKRRRDTRQKAAQPRSDPPAPGGGN---LEQGLGPVP---PPSYTAALALANGGDDDKWPSAQHNEASPPPFAPAEG--VGDGDIVPRSAPTAVVL-------------GAVEDRIAAGLGGEGSAAVLPSAEKSTTDTTSTATHSTANVSTHERAELAVFQQRQDVLEAAPVASGSRPVPASGSSGGVGGVDVGVGGARETSSAADRQNSAEDLGLGHAVLGAAQELARHCQVPGISEAAAVLCIMANLFTDNRENDRENDSRLRQCRSIVMALKRAEKVVGKGGDTTGEVARVLIEDVHDAIFDLVELIKTFQSKNKLSKLFLSTLFKRRKDELDAVVDRAITRLQLGLQLQMGHDMGSVKDSMKSXXXXXXXXXXXXXXXXXXXXXXXXXSNAESTTSESVAEARSIRRKRKLDQVEIPEDQLFITTDLLGKGGFGEVYLADYNGHNAAAKVLYIAHDLGALDENQKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMVLVMELLPNGDLLTLLRRSTNPLPEEKSRQIIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKI 947          
BLAST of mRNA_L-elsbetiae_contig1928.5706.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 521 bits (1342), Expect = 6.430e-162
Identity = 333/611 (54.50%), Postives = 402/611 (65.79%), Query Frame = 1
Query:  640 SEQQSAADSTPIVAGVLSAVAGAGLIALAIFLGRRRASRQKTT-----PPAPSTHDDDILDQGLEQSPDVRPPAYQTLVA---GSGDNKPPFQHNVSPHRHTQVEADEADGGGIAPPSAPAEASLDTTQVRSSAEHADNAVKDRDAGLAGDDAAGGSAEKHFAGTAPIATASTANMSTTERDEVAQFHQRRRAGDAASTAGGPKPDEASGRAVPGASSD-------AGRRNSGGDIGIGHAVLAAAQELALHCQVPGVSEAAAAVCIMANMATDSRDNVRASESRLRLCRTIVLALKRAAKVAEKGEDTIGEVARVLIEEVHEAIYDLVELIQTFHGKNKLSKLFMSTLFKRRQEELDAVVDRAIMRLQLGLQLHVGQDVNAVKAAQEDIKDGLKSVKEE-------MHLYQRSITEAEL----------------ESVVEARSIKRRRKLDQVEIPEEHLSMTDELLGKGGFGEVYVADYNGHNAAVKVIHIAHDVGPLDENQRRRETSQRRAFLRELEAMIRLRSDNTVNVYGAVTSLPDRMMLVMELLAGGDLLALLRESKEPFPEEHSRRIIRDICTGMAFLHSKNTVHGDLKSANVLLDGDGRAKV 2358
            S + S +DSTPIVAGVLSAVAG  LIALA    RRR  RQ+T      PPAP   +   L+QGL   P   PP+Y   +A   G  D+K P   N          A+   GG I P SAP +  LD  + R +A+            L G+ +A  SA             STAN+S+ ER E+  F QR+   +AA  A G +P  ASG +              A R NS  D+G+GHAVL AAQELA HCQVPG+SEAA  +CIMAN+ TD+R+N RA++SRL+ CR+IV+ALKRA KV  KG DT GEVARVLIE+VH+AI+DLVELI+TF  KNKLSKL +STLFKRRQ+ELDAVVDRAI RLQL     +G D+ +VK + + +++               M+LY+++     +                ESV EARSI+R+RKLDQVEIPE+ L +T +LLGKGGFGEVY+ADYNGHNAA KV++IAHD+G LDENQ++RET QR+ FLRELEAMIRLRS NTVNVYGAVTSL DRM+LVMELL  GDLL LLR S +P PEE SR+II DIC GMAFLH KNTVHGDLKSANVLLDG GRAK+
Sbjct:  384 SSKGSTSDSTPIVAGVLSAVAGVALIALAALGKRRRDKRQETAQPRSDPPAPGGGN---LEQGLGPVP---PPSYTAALAFAKGGDDDKWPSAQNNEASPPPYAPAEGVGGGDIVPQSAPKQVVLDAAEDRGAAK------------LGGEGSAAASAXXXXXXXXXXXXHSTANVSSHERVELEVFQQRQGVLEAAPVASGSRPAPASGNSXXXXXXXXXXXXXAADRPNSSDDLGLGHAVLGAAQELAHHCQVPGISEAAGVLCIMANLFTDNRENDRANDSRLKQCRSIVMALKRAEKVVGKGSDTTGEVARVLIEDVHDAIFDLVELIKTFQSKNKLSKLLLSTLFKRRQDELDAVVDRAITRLQL----QMGHDMGSVKDSMKSMENXXXXXXXXXXXXXXGMNLYRQASQTISVSVPGCVEGSNAESTTSESVAEARSIRRQRKLDQVEIPEDQLFITTDLLGKGGFGEVYLADYNGHNAAAKVLYIAHDLGALDENQKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMVLVMELLPNGDLLTLLRRSTKPLPEEKSRQIIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKI 972          
BLAST of mRNA_L-elsbetiae_contig1928.5706.1 vs. uniprot
Match: D8LRE9_ECTSI (Transmembrane receptor kinase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE9_ECTSI)

HSP 1 Score: 468 bits (1204), Expect = 1.120e-143
Identity = 307/584 (52.57%), Postives = 375/584 (64.21%), Query Frame = 1
Query:  649 QSAADSTPIVAGVLSAVAGAGLIALAIFLGRRRASRQKTTPP-APSTHDDDILDQGLEQSPDVRPPAYQTLVAGSGDNKPPFQHNVSPHRHTQVEADEADGGGIAPPSAPAEASLDTTQVRSSAEHADNAVKDRDAGLAGDDAAGGSAEKHFAGTAPIATA-STANMSTTERDEVAQFHQRRRAGDAASTAGGPKPDEASGRAVPGASSDAGRRNSGGDIGIGHAVLAAAQELALHCQVPGVSEAAAAVCIMANMATDSRDNVRASESRLRLCRTIVLALKRAAKVAEKGEDTIGEVARVLIEEVHEAIYDLVELIQTFHGKNKLSKLFMSTLFKRRQEELDAVVDRAIMRLQLGLQLHVGQDVNAVKAAQEDIKDGLKSVKEEMHLYQRSITEAELESVVEARSIKRRRKLDQVEIPEEHLSMTDELLGKGGFGEVYVADYNGHNAAVKVIHIAHDVGPLDENQR------------RRETSQRRAFLRELEAMIRLRSDNTVNVYGAVTSLPDRMMLVMELLAGGDLLALLRESKEPFPEEHSRRIIRDICTGMAFLHSKNTVHGDLKSANVLLDGDGRAKV 2358
            +SA+ + P+VAGV+SA+A A LI L ++  RR+A++   +    P   DDD L+ G E +         + V  S +N+PP       H H  VE   A   G AP          +  V SS E +    +       G         K       + TA STA +ST+ER E+A          A       +P  ASG     ASS AGRR S GD+G+G AV+ AAQELA  CQVPGVSEA   V I+ N+  DSRD+    +SRLR CR+IV+ L RA KVA  GE+T G+VAR LI++VHEAI+DLVELI+T+  KNKLSK+ MSTLFKRRQ+ELDAVVDRAI+RLQLGLQ+ VGQDV A                  M LY+ SI E + ES+ +ARS +RRRKLDQVEIPEEH+++T+E+LG+GGFGEVY+ADYNG NAA KV+ IA D+G L EN              +RE SQRRAFLREL+AMIRLRS +TVNVYGAVTSLPDRM+LVMELL+GGDL  LLR  ++P PEE SRRII DIC GMAFLHSK+TVHGDLKSANVLLDG GRAK+
Sbjct:  290 ESASGTAPVVAGVVSAIAAAALITLGVWYKRRQAAKNMGSGRLVPPPGDDDGLEHGREYNRQQGVEPAASAVVYSDNNQPP-------HPHKPVEVVTA---GKAP----------SGSVSSSTEQSTRMPEGPGVRFPG------VGTKDVLAQQSLTTAGSTAVVSTSERAELAGISTENTGRFA------DEPMPASGERE--ASSTAGRRGSFGDVGVGQAVMVAAQELAHRCQVPGVSEAVTLVSILVNLVKDSRDDSSGGDSRLRQCRSIVMVLNRADKVAGNGENTTGKVARTLIDDVHEAIFDLVELIKTYQSKNKLSKVLMSTLFKRRQDELDAVVDRAIVRLQLGLQVQVGQDVKAG-----------------MDLYKGSIAEVQSESLADARSTRRRRKLDQVEIPEEHVTITNEVLGRGGFGEVYLADYNGRNAAAKVLLIARDLGTLSENDALESPLAGRSNTTKREDSQRRAFLRELDAMIRLRSPHTVNVYGAVTSLPDRMVLVMELLSGGDLRTLLRNYQQPLPEEQSRRIIGDICAGMAFLHSKDTVHGDLKSANVLLDGSGRAKI 822          
BLAST of mRNA_L-elsbetiae_contig1928.5706.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 421 bits (1081), Expect = 1.290e-124
Identity = 283/578 (48.96%), Postives = 352/578 (60.90%), Query Frame = 1
Query:  640 SEQQSAADSTPIVAGVLSAVAGAGLIALAIFLGR-RRASRQKTTPPAPSTHDDDILDQGLEQSPDVRPPAYQTLVAGSGDNKPPFQHNVSPHRHTQVEADEADGGGIAPPSAPAEASLDTTQVRSSAEHADNAVKDRDAGLAGDDAAGGSAEKHFAGTAPIATASTANMSTTERDEVAQFHQRRRAGDAASTAGGPK-PDE---ASGRAVPGASSDAGRRNSGGDIGIGHAVLAAAQELALHCQVPGVSEAAAAVCIMANMATDSRDNVRASESRLRLCRTIVLALKRAAKVAEKGEDTIGEVARVLIEEVHEAIYDLVELIQTFHGKNKLSKLFMSTLFKRRQEELDAVVDRAIMRLQLGLQLHVGQDVNAVKAAQEDIKDGLKSVKEEMHLYQRSITEAELESVVEARSIKRRRKLDQVEIPEEHLSMTDELLGKGGFGEVYVADYNGHNAAVKVIHIAHDVGPLDENQRRRETSQRRAFLRELEAMIRLRSDNTVNVYGAVTSLPDRMMLVMELLAGGDLLALLRESKEPFPEEHSRRIIRDICTGMAFLHSKNTVHGDLKSANVLLDGDGRAKV 2358
            S  +SA   TPIVAG +SAVA A  IALAI+  R +RA   KT    P   +DD  + G E         +   V   G+N+PP       H    +E       G+   +  +EA+   +  RS+ + A   +  R                       +  A +A+ S T           R    A S  G P   D+    SG+    + +D+ R +    +G G AVL  AQELA HCQVPGVSE A  V ++ N+ TDS DN   S+ RLR CR+I++ L RA KVA  GE+T GEV R+LIE+VHEAI+DLVELI+T+  KNKLSK+ MSTLFKRRQ+ELDAVVDRA++RLQLGL + VGQDV+A+K                M  Y+ SI EA+ ES+ +AR  +R+RKLDQVEIPE HL++T+E+LGKGGFGEVY+ADYNG NAA K  H  +D             SQRRAFLREL+AMIRLRS +TVNVYGAVTS PD M+LVMELL+GGDL  LLR S++P P+E SRRII DIC GMAFLH K+TVHGDLKSANVLLDG GRAK+
Sbjct:  441 SGDESAPSPTPIVAGAVSAVAAAIFIALAIWYKRWQRAKGMKTGSVVPPISNDDNFEHGREGDNQQGAKQHAPTVVHGGNNQPP-------HMRKPIEV----VAGVEGMAVASEAAPGGSASRSTEQAAQTRMNTRGVAF----------------PCVVEEAISADQSLTTTSSTTTLPGERADTTAVSRKGTPHFADDHILVSGKGET-SQTDSHRASVVTSVGGGQAVLLLAQELAHHCQVPGVSEVATLVSLLVNLVTDSCDNNGGSDGRLRQCRSIIILLNRADKVAGNGENTTGEVTRMLIEDVHEAIFDLVELIKTYQSKNKLSKVLMSTLFKRRQDELDAVVDRAMVRLQLGLHMQVGQDVSAIKTG--------------MDQYKGSIAEAQSESLADARRTRRQRKLDQVEIPEGHLTITNEVLGKGGFGEVYLADYNGRNAAAK--HHQND-------------SQRRAFLRELDAMIRLRSPHTVNVYGAVTSQPDHMVLVMELLSGGDLRTLLRTSEQPLPQEQSRRIIGDICAGMAFLHEKDTVHGDLKSANVLLDGSGRAKI 961          
BLAST of mRNA_L-elsbetiae_contig1928.5706.1 vs. uniprot
Match: A0A6H5KA37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA37_9PHAE)

HSP 1 Score: 395 bits (1014), Expect = 1.780e-115
Identity = 215/358 (60.06%), Postives = 269/358 (75.14%), Query Frame = 1
Query: 1309 GHAVLAAAQELALHCQVPGVSEAAAAVCIMANMATDSRDNVRASESRLRLCRTIVLALKRAAKVAEKGEDTIGEVARVLIEEVHEAIYDLVELIQTFHGKNKLSKLFMSTLFKRRQEELDAVVDRAIMRLQLGLQLHVGQDVNAVKAAQEDIKDGLKSVKEEMHLYQRSITEAELESVVEARSIKRRRKLDQVEIPEEHLSMTDELLGKGGFGEVYVADYNGHNAAVKVIHIAHDVGPLDE---------NQRRRETSQRRAFLRELEAMIRLRSDNTVNVYGAVTSLPDRMMLVMELLAGGDLLALLRESKEPFPEEHSRRIIRDICTGMAFLHSKNTVHGDLKSANVLLDGDGRAK 2355
            G AVLAAA+ELA HCQ+PGVSEAA  V I+ ++ TDSRD++   +  ++ CR+IV+ L+RAAKV   G DT  EV R LIEEVH+A+ DLV+LI+T+  KNKLSK+ MSTLFKRRQEELDAVVD+AI+ L LGLQ+ VGQDV                  E + L++RS  EA+ ES+ EAR  +R+RKLDQVEIP++H+ +T+E+LG+GGFGEVY+ADYNGHNAA KV +I H  G  D+             RE  QR+AFLREL+AMIRLR  +TVNVYGA+TSLPDR++LV+ELL GGDL  +L+ S++P PEE SR+II+DIC GMAFLHSK+TVHGDLKSAN+LLD  GRAK
Sbjct:  572 GQAVLAAAEELAHHCQIPGVSEAATVVSILVHLVTDSRDSMSRGDGAVKRCRSIVMMLERAAKVLGNGGDTNSEVERALIEEVHDAVSDLVDLIKTYQNKNKLSKVLMSTLFKRRQEELDAVVDKAILHLHLGLQVQVGQDVA-----------------EGLDLHKRSTAEAKAESLAEARRARRQRKLDQVEIPDDHVVITEEMLGRGGFGEVYLADYNGHNAAAKVQYIIHGFGRRDDVLNGPKSGQPDAVREKVQRKAFLRELDAMIRLRHPHTVNVYGAITSLPDRLILVLELLPGGDLRTMLKNSEQPLPEEQSRQIIKDICAGMAFLHSKSTVHGDLKSANILLDARGRAK 912          
BLAST of mRNA_L-elsbetiae_contig1928.5706.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE)

HSP 1 Score: 394 bits (1013), Expect = 4.660e-114
Identity = 278/642 (43.30%), Postives = 365/642 (56.85%), Query Frame = 1
Query:  637 PSEQQSAADSTPIVAGVLSAVAGAGLIALAIFLGRRRA---SRQKTTPPAPSTHDDDILDQGLEQSPDVRPPAYQTLVAGSGDNKPPFQH---NVSPHRHTQVEADEADGGGIAPPSAPAEASLDT-------------------------------------------------TQVRSSAEHADNAVKDRDAGLAGDDAAGGSAEKHFAGTAPIATASTANMSTTERDEVAQFHQRRRAGDAASTAGGPKPDEASGRAVPGASSDAGRRNSGGDIGIGHAVLAAAQELALHCQVPGVSEAAAAVCIMANMATDSRDNVRASESRLRLCRTIVLALKRAAKVAEKGEDTIGEVARVLIEEVHEAIYDLVELIQTFHGKNKLSKLFMSTLFKRRQEELDAVVDRAIMRLQLGLQLHVGQDVNAVKAAQEDIKDGLKSVKEEMHLYQRSITEAELESVVEARSIKRRRKLDQVEIPEEHLSM-TDELLGKGGFGEVYVADYNGHNAAVKVIHIAHDVGP-----------LD-ENQRRRETSQRRAFLRELEAMIRLRSDNTVNVYGAVTSLPDRMMLVMELLAGGDLLALLRESKEPFPEEHSRRIIRDICTGMAFLHSKNTVHGDLKSANVLLDGDGRAKV 2358
            PS ++S +++TP+VAGV+SA AG  LIA+ ++L RRR    SR  + PP  ++      D GLE   +       T VA      P  Q    +   H HT   A+ +D   ++                                                              Q   +    D++ K     L   +   G+A K    ++  AT ST +MST ER E+ QF +++++  + ++  G    E  G  +  ASS  GRR S G IG+  AV+ AA+ LA HCQ+PGVSEAA+ V  +  + +DSRD     +S LR CR+IV  L+RA+KVA +G +T     R LI+EVH AI DLVELI+T+   N+LSK+ MST FK RQ +L+A +DRA+ RLQ GLQ+ VG DV  VK              E + + Q SI EA   S+ +ARS +R+RKLDQVEIPE+ + + +DELLGKGGFGEV++A+YN  NAA KV+HIAHD+G            +D ++   RE SQR+AFLRELEAMIRLRS +TV VYGA+TS PDR++LVMELLAGGDL  LL+ S +P PEE  RRII DIC GM FLHSK TVHGDLKSANVLLDG GRAK+
Sbjct:  463 PSGEESTSNTTPMVAGVVSAAAGVCLIAVGVWLRRRRTGGKSRTDSLPPPSTSRGSKPNDPGLEPHTEA---GLGTAVAPDNGGHPSSQDRRPSQIAHAHTAAVAERSDDVIVSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPRPVQEMPNNPEQDSSDKISPLALGSGNIKDGAANK----SSLTATVSTVDMSTAERAELGQFDEKQQSAASVASVDGESAPEVLGEGI--ASSATGRRGSRGGIGLREAVMQAAENLAYHCQIPGVSEAASVVSTLVMLVSDSRDIKSGGDSNLRQCRSIVRILERASKVAGRGGETTTAEQRDLIDEVHYAIEDLVELIKTYQSMNRLSKVLMSTSFKWRQNDLEAAIDRALSRLQFGLQVQVGDDVRGVK--------------EGIDVVQGSIVEANAASLAKARSARRQRKLDQVEIPEDQVMIFSDELLGKGGFGEVFLAEYNRRNAAAKVLHIAHDLGKPGGQEDLLEARVDGQSNPEREKSQRKAFLRELEAMIRLRSPHTVGVYGAITSRPDRLVLVMELLAGGDLRRLLKNSDQPLPEEQCRRIIGDICAGMHFLHSKETVHGDLKSANVLLDGAGRAKI 1081          
BLAST of mRNA_L-elsbetiae_contig1928.5706.1 vs. uniprot
Match: D7FL77_ECTSI (Protein tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL77_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 1.440e-113
Identity = 211/369 (57.18%), Postives = 257/369 (69.65%), Query Frame = 1
Query: 1288 SGGDIGIGHAVLAAAQELALHCQVPGVSEAAAAVCIMANMATDSRDNVRASESRLRLCRTIVLALKRAAKVAEKGEDTIGEVARVLIEEVHEAIYDLVELIQTFHGKNKLSKLFMSTLFKRRQEELDAVVDRAIMRLQLGLQLHVGQDVNAVKAAQEDIKDGLKSVKEEMHLYQRSITEAEL-ESVVEARSIKRRRKLDQVEIPEEHLSMTDELLGKGGFGEVYVADYNGHNAAVKVIHIAHDVGPLDENQRRRETSQRRAFLRELEAMIRLRSDNTVNVYGAVTSLPDRMMLVMELLAGGDLLALLRESKEPFPEEHSRRIIRDICTGMAFLHSKNTVHGDLKSANVLLDGDGRAKVIVSVVGVNLLM 2391
            S  DIG+G AVLA A+ELA   Q+PGVSEAA  VCIMAN+ +DSR+N  AS SRLR CR++VLALKRA KV  KG DTIGE  RVLIE+VH AI+DL++L                                         QL    D++++K + + +++G       MH + +  T   + ESV EAR I+R+RK DQVEIPEEHL +T++ LGKGGFGEVY+ADYNGHNAA KV+ I HD+G  DENQ++RETSQRRAFLRELEAMIRLRS NTVNVYGAVTSLPDR++LVMEL+ GGDL  +L  S+EP PEE SRRI+RDICTGMAFL S+ TVHGDLKSANV LDG GRAK  +  +G+  ++
Sbjct:   10 SASDIGLGQAVLAMAEELARSYQIPGVSEAAGVVCIMANLFSDSRENDEASTSRLRQCRSMVLALKRADKVVGKGGDTIGEAVRVLIEDVHAAIFDLLDL-----------------------------------------QLQARHDMSSMKESMQSMEEG-------MHQHNQGSTAGTISESVAEARRIRRQRKFDQVEIPEEHLFITNDELGKGGFGEVYLADYNGHNAAAKVLRITHDLGAFDENQQQRETSQRRAFLRELEAMIRLRSPNTVNVYGAVTSLPDRVVLVMELMPGGDLQTILTSSQEPLPEEQSRRIVRDICTGMAFLQSRKTVHGDLKSANVFLDGSGRAKATLVDLGLICML 330          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1928.5706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSI8_9PHAE3.210e-22367.90Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G7F2_ECTSI3.700e-19264.01Tyrosine kinase specific for activated (GTP-bound)... [more]
D7FL57_ECTSI4.930e-19063.02Hypothetical leucine rich repeat kinase n=1 Tax=Ec... [more]
D7G7X7_ECTSI1.560e-17057.83ATP binding / amino acid binding / protein kinase/... [more]
A0A6H5KF25_9PHAE6.430e-16254.50Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LRE9_ECTSI1.120e-14352.57Transmembrane receptor kinase n=2 Tax=Ectocarpus s... [more]
D8LHV1_ECTSI1.290e-12448.96Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KA37_9PHAE1.780e-11560.06Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KY76_9PHAE4.660e-11443.30Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FL77_ECTSI1.440e-11357.18Protein tyrosine kinase n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1928contigL-elsbetiae_contig1928:8667..14226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score543.1
Seed ortholog evalue1.5e-151
Seed eggNOG ortholog2880.D7G7F2
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K14767,ko:K16175,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04390,ko04391,ko04530,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05165,ko05169,ko05203,map04064,map04210,map04217,map04390,map04391,map04530,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05165,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG0515@1,COG4886@1,KOG0192@2759,KOG0619@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Exons6
Model size3634
Cds size1671
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1928.5706.1prot_L-elsbetiae_contig1928.5706.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1928 10360..13403 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815800.0046067-UTR-L-elsbetiae_contig1928:8666..92131622815800.0046067-UTR-L-elsbetiae_contig1928:8666..9213Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1928 8667..9213 +
1691683110.614384-UTR-L-elsbetiae_contig1928:8666..92131691683110.614384-UTR-L-elsbetiae_contig1928:8666..9213Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1928 8667..9213 +
1622815800.017519-UTR-L-elsbetiae_contig1928:9766..103591622815800.017519-UTR-L-elsbetiae_contig1928:9766..10359Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1928 9767..10359 +
1691683110.6244366-UTR-L-elsbetiae_contig1928:9766..103591691683110.6244366-UTR-L-elsbetiae_contig1928:9766..10359Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1928 9767..10359 +
1622815800.0925694-UTR-L-elsbetiae_contig1928:13403..142261622815800.0925694-UTR-L-elsbetiae_contig1928:13403..14226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1928 13404..14226 +
1691683110.6804397-UTR-L-elsbetiae_contig1928:13403..142261691683110.6804397-UTR-L-elsbetiae_contig1928:13403..14226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1928 13404..14226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815800.0301309-CDS-L-elsbetiae_contig1928:10359..107281622815800.0301309-CDS-L-elsbetiae_contig1928:10359..10728Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1928 10360..10728 +
1691683110.6323707-CDS-L-elsbetiae_contig1928:10359..107281691683110.6323707-CDS-L-elsbetiae_contig1928:10359..10728Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1928 10360..10728 +
1622815800.0414197-CDS-L-elsbetiae_contig1928:10853..110451622815800.0414197-CDS-L-elsbetiae_contig1928:10853..11045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1928 10854..11045 +
1691683110.639874-CDS-L-elsbetiae_contig1928:10853..110451691683110.639874-CDS-L-elsbetiae_contig1928:10853..11045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1928 10854..11045 +
1622815800.0517864-CDS-L-elsbetiae_contig1928:11620..117281622815800.0517864-CDS-L-elsbetiae_contig1928:11620..11728Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1928 11621..11728 +
1691683110.647419-CDS-L-elsbetiae_contig1928:11620..117281691683110.647419-CDS-L-elsbetiae_contig1928:11620..11728Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1928 11621..11728 +
1622815800.067655-CDS-L-elsbetiae_contig1928:11970..121531622815800.067655-CDS-L-elsbetiae_contig1928:11970..12153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1928 11971..12153 +
1691683110.656399-CDS-L-elsbetiae_contig1928:11970..121531691683110.656399-CDS-L-elsbetiae_contig1928:11970..12153Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1928 11971..12153 +
1622815800.0828066-CDS-L-elsbetiae_contig1928:12584..134031622815800.0828066-CDS-L-elsbetiae_contig1928:12584..13403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1928 12585..13403 +
1691683110.6679726-CDS-L-elsbetiae_contig1928:12584..134031691683110.6679726-CDS-L-elsbetiae_contig1928:12584..13403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1928 12585..13403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1928.5706.1

>prot_L-elsbetiae_contig1928.5706.1 ID=prot_L-elsbetiae_contig1928.5706.1|Name=mRNA_L-elsbetiae_contig1928.5706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=557bp
MSTTERDEVAQFHQRRRAGDAASTAGGPKPDEASGRAVPGASSDAGRRNS
GGDIGIGHAVLAAAQELALHCQVPGVSEAAAAVCIMANMATDSRDNVRAS
ESRLRLCRTIVLALKRAAKVAEKGEDTIGEVARVLIEEVHEAIYDLVELI
QTFHGKNKLSKLFMSTLFKRRQEELDAVVDRAIMRLQLGLQLHVGQDVNA
VKAAQEDIKDGLKSVKEEMHLYQRSITEAELESVVEARSIKRRRKLDQVE
IPEEHLSMTDELLGKGGFGEVYVADYNGHNAAVKVIHIAHDVGPLDENQR
RRETSQRRAFLRELEAMIRLRSDNTVNVYGAVTSLPDRMMLVMELLAGGD
LLALLRESKEPFPEEHSRRIIRDICTGMAFLHSKNTVHGDLKSANVLLDG
DGRAKVIVSVVGVNLLMCKSWVTLAFCSVVFFVSDSSMTCFSEVVVVLGI
FMYGKLFLHHRPRDPFVTEACRYITDTGVLVVLVISDRNWYLVPLPNTAV
EKGLRSTSFHIVSNTSVRLIPAELPSKSYEGTEVLDPVPSVSSTQNPIPF
QPRFPT*
back to top

mRNA from alignment at L-elsbetiae_contig1928:8667..14226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1928.5706.1 ID=mRNA_L-elsbetiae_contig1928.5706.1|Name=mRNA_L-elsbetiae_contig1928.5706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5560bp|location=Sequence derived from alignment at L-elsbetiae_contig1928:8667..14226+ (Laminarionema elsbetiae ELsaHSoW15)
ATCCAAAAATTTGGATATATCTGGGTGCCCTTGGTGCATTTTGATTTTGC TTGTTTTTGGTGAATTTCAGCCGTTCTTGTGAAAACATGAGATCAGGGTG CCATCCTCGAAGCACAGCCACCACGGTGTTCCAGATAAATAGAACTGAGT CCCGAGAGCGCGTGAACCGCCCCCCCAGGAAAACTCCTCATCCATGCCAC CCAAAGGCAGTGGTTCACGGGTTGTATCGCTTGTTCCCCGCTCATTCGGC TACGGGTTGGGGTACATTACCGGACGAGTTGACGTGTTCTTGTTCGCTTG TAAATACAAGTTAATTACAATGCACAGCCAGCAACTGCCACTAACTGAAA ATATTTTGCTACCGACCTCAAATACTCCCTGCATCGGCCAACTTTCGTGG AAACGGAAGAGCTTGTGCTTACACCGTCGCCCACACTTGTGCTTACACCG CCGCCCACCGTGGGCACGGAAGTACCACTATCGGTCGTCACGTCAGCGCC CGAGTCTGCTCCAGAAACTACGCCGCCACCCGGCTCGGGATCAGAAGGTA GGGTTTCTGGCTGGGTGCCGACGCTGCTCATGATGTGGAAAAATATGCAA TACATCCCTACCCCTAACCGGCAATGAAATATGAAGCTCTACACACTTTA AAGAATACTCCCGGTTTTCTCCATGAATGTATGGCCCGACCGCAGGCGGG GTCCCTACGTACACTCAAAGCATCCCAATCTCAACTTGCGCCTTGCCATG AAAAGTATATTTCGTAGCAATAATGGTAACTTGTGAACAACGAGCGAACT TCTTCTGCTTTTCTCGAGCAAGGTATTTTCAGATGACAGATTTAATCGGT CTTTTAGGATCTACTACTGTAGACAGCTCTTGGAATTCCAGTTTTTTTTT CTTCGATTTGCTTTTAAATCGTACCATACATAAATTATAGAAATGGCGGT TGGGAAAACTCCGGTTCTGGATGCGTGTTTCGCGCGTTCTTCCTTTCACG TACGGTTTTTCAACGCCTACCGAAGGAGTCGCAGCAGTAGCCTTTATAAC ATAATCGACATGACATGCTGCTGTCTTCACGCTCCCGTTACCGACTGCAG CGTCTTCTCCGCCACTCGCAGCTGCGTCACCGGCCCCAACGCCCGCTCCG TCTTTCGGCAACACCTCGATCGCAAGTCCTGGATCTACTCCATCAGAACA ACAGTCGGCTGCGGACTCTACTCCCATCGTAGCGGGGGTGTTGTCCGCGG TTGCTGGTGCGGGCCTCATCGCACTCGCGATTTTCCTGGGGCGGCGGCGA GCCTCGAGGCAGAAAACCACCCCCCCGGCTCCATCTACCCACGACGACGA TATCCTCGATCAAGGCCTGGAGCAGTCGCCGGATGTCCGCCCCCCTGCAT ACCAAACACTTGTCGCAGGAAGTGGAGACAACAAGCCTCCTTTCCAGCAC AACGTGTCACCGCATCGACACACGCAGGTGGAGGCCGACGAGGCTGACGG CGGAGGCATCGCTCCGCCATCTGCGCCGGCGGAGGCATCGCTCGACACAA CACAGGTGCGGTCGAGCGCTGAACATGCCGACAATGCTGTCAAAGATCGC GACGCCGGACTCGCCGGCGACGATGCGGCAGGAGGCTCAGCGGAGAAGCA CTTTGCGGGCACCGCTCCCATTGCTACGGCTTCCACCGCCAACATGTCGA CAACCGAACGGGACGAAGTTGCCCAATTTCACCAAAGGCGACGCGCAGGG GATGCAGCTTCTACCGCCGGCGGGCCCAAACCGGACGAAGCCTCAGGCCG CGCTGTCCCTGGAGCCTCCTCGGATGCCGGCCGTCGAAACTCCGGCGGTG ACATCGGGATTGGCCATGCCGTCTTGGCGGCAGCACAGGAGCTGGCGCTT CATTGCCAGGTCCCTGGCGTTAGCGAGGCGGCGGCAGCAGTGTGCATCAT GGCCAACATGGCGACGGATAGCCGCGACAACGTCAGGGCGAGTGAATCAA GACTCCGACTGTGCCGCACGATCGTTTTGGCGCTAAAGCGGGCGGCAAAG GTGGCTGAGAAGGTGAGCTCGGGACACTTCATCTGTTCAACGTTTCATGC CTATGTAGCTTGCGTCGGGAAGAAGTGTGATGGCTATGTATGTGCGCAAC ACCTTAGCGTCGCCTCTTCCCATGAAATTTTCTCCAGGGTGAGGACACGA TCGGGGAGGTGGCGCGTGTCTTGATCGAAGAAGTGCACGAGGCCATCTAC GATCTGGTGGAACTGATTCAAACATTCCACGGTAAGAACAAGCTTTCGAA GTTGTTCATGTCGACGCTGTTCAAGCGGCGCCAGGAGGAGCTAGATGCCG TGGTGGACCGAGCAATCATGCGCCTGCAGGTGAGTGGAGTGCCCGGTTTG TGCCCAGTTACGCACGTGGTACTGCGGTAGTGTTCTTGGTTTTGCACGGG AGGATGGGCTGGCGTACGTGTCGCGCCCCTCTTCGGTCCTCTGTTGACAG CATTATCTGCGGTAGTGCCACAAGCAGGCGATTGAAACCCCGCCGCACAA ACGAAGAACCATCGCTCGATGCTGCGCTTTGGTTCGCAGCCCTGCCTCGA GGTGACCCGCGAACACGACGAGTTGCGCATGGGACGGGTTTCGTTCTGGA GCCTTTGGCTTCAAAATCCGCCCTTCATTGGATGCTGTCCATTCTCGTTT GCCGCAGATGGGTGCTTGATTGCAATCCGGTTTGCGACTCATCCCAAACG CGATAGATCCTTGCACGAAATAATGGCAAGAGTTAGGGTTGATTTATTTC GTAAAAGGATGATTGATGGCTTGTGCATGAAAGCGTGCGTATTGTGGAAG AGTACGTGAACTTGGGTCGTGTAGGTCCGTGAGTGCCCTCCTTCAACCAA CCGACCTAACGCAATCACGACTACTCCCCTTGGCTTCTGCTCGTCGCAAT CCAGTTGGGCCTGCAGCTGCACGTAGGCCAAGACGTGAACGCAGTCAAGG CAGCCCAAGAGGACATCAAGGATGGCTTGAAGTCCGTCAAGGAGGAGATG CACCTCTACCAGGCGAGTCTGGCCATTTGCGCAAGCAGGACAAGTAGTTC GTTCAGTAGTACGTTGTATTGCGGCTCTGAATCCCGACGTACCTCGGCGA GGAAATGTACAAAGCACTAACAAAGTTGCAGGATCCTTTGGTCCTCGTGC ATTCGAGGGGCAGGGTAATTGAGCTTACTCATAGTAGGGACCTGAGGCCT TGCTAAATTCGCGTTGTGCTGCCCTGCACGACTTTTTTGGCCTTCAATGT GCAGCGTTCCATCACCGAGGCCGAACTGGAGTCTGTGGTAGAGGCTCGTA GCATCAAGCGGCGGCGCAAGCTTGATCAAGTCGAGATTCCCGAGGAACAC TTGTCCATGACAGACGAACTGTTGGGAAAGGGAGGCTTTGGCGAAGTGTA CGTGGCCGATTATAACGGTCACAATGCAGCGGTGAAGGTATGGAATGGAT TAACTTTCTTTTTATTTCTGAGTGGCGGTTGTTGGGTGACCAAACCCACC TCAACGCAGGTACTCTTGAAACCGACGGAAAGGGTGGAAGACAACAGAAA TCATGATGGCATCCGAAAAATCTTTGACCAGACATGACGAGAAAAAGTGC TGTCGTGTACGTTCCTTACCCATGAGGATCGATAACGACTCATGGTACAA CGAGCTCATTCCTCGGCAAAGTTAGGTGAATCTGCCCCACGCCAAAATCT TTCGTTCAACCCCCATGACATGTATTAACTAGACAGATGCATAGCGCGTC CCATCGCGAGCTACGCTGCTACTTCGTTTGTGAATGGATACTTTGCTGAA CGTTTCCTGGCCTGCGCTCCTCACACGAAGCGGCTTGTTTTCGGCTGCGG TTTCGGCACCCAACACAGGTGATTCATATCGCCCACGACGTGGGCCCACT TGACGAGAACCAAAGGCGACGGGAGACCAGCCAGCGCAGAGCGTTTTTGC GGGAGCTTGAAGCCATGATCCGCCTCCGAAGCGACAATACGGTCAACGTC TACGGAGCAGTGACGTCTCTGCCAGATCGGATGATGCTCGTCATGGAGCT GCTCGCTGGCGGAGATCTCCTCGCGTTGCTGAGGGAGTCAAAGGAGCCAT TCCCCGAGGAGCATTCCAGGCGTATCATCCGAGATATCTGCACCGGCATG GCCTTCCTGCACAGCAAAAATACTGTCCACGGCGACCTCAAGTCGGCCAA CGTACTTCTCGATGGTGACGGCAGGGCTAAGGTGATCGTGTCGGTCGTGG GCGTCAATTTGCTCATGTGCAAATCTTGGGTCACGCTCGCTTTCTGCAGT GTTGTGTTTTTCGTCTCTGATAGCTCCATGACTTGCTTTTCCGAGGTGGT GGTTGTCTTAGGCATATTTATGTACGGGAAGCTGTTTCTACATCATCGAC CTCGAGACCCCTTCGTTACAGAGGCGTGCCGTTACATTACGGACACCGGG GTATTGGTTGTTCTGGTTATTTCCGACAGAAACTGGTACCTGGTCCCGCT ACCAAACACTGCCGTAGAAAAGGGTCTACGGAGTACAAGCTTCCATATCG TATCGAACACTTCCGTGCGTTTGATACCTGCAGAATTGCCATCGAAATCA TACGAGGGTACGGAGGTGTTGGATCCCGTGCCTTCCGTGAGCTCGACGCA GAATCCCATACCCTTCCAACCACGCTTTCCTACATAGATATGCATCATTT GTTTGCTGGCTGGCTGTACTGTGCCCCCGTGGGGTTTGTATTGTTTTCGT TTCTCGTTGCAGATAGCGGACTTCGGCACGTCCAGGTGGACGCAACACAC CAACTCTACCGGTTTGGCAACCTACACCATCAAAGCAAGTCAGACCACCC AAATGAGCGTCGCCTGGAGCGCACCGGAGGTGTGAAGCTCACACACTTCT ATTCGGGTTTTAAAGAGCCACCAACGGAGTGTTTAGGCGGTGTGGCCGGA TCGCGCCCGCTCCGCCGGGAATGCCTTTGTGAACTCGAGTAGGTCTTCGT GGGGTGTCTAGTCGGTCGGATATTTCGCTTCTGAGGTCTTGAGCCATACT TGTGAGATAGTGCGTGCGACAAAAAAATTGGCATATCACAAAATTACTGT CATCATTTTGCGGTAGGCCGGGGTGCACATAATCAATGGCTTATCCCCAG CCCGCTCTCTGTACAGGGATTTGTTTTAAAACGCAATGCCCTTAGACCGG GTCATGTGCCGGGTCCGGGCCTTCAGCAGCATCATCCCATGGTTTGTTGC CGTGGTTGCCGATGGGGTTTTGGCGTTGACTAGGCCCGGCGCGGATATGA TAACTTTTCATAATCCGTTGAAAGCCCTACATACCTTCTTCGCAGTTCGC CCGGGGTTGGATGGTTTTGGGCTTTTATTTTCGATCCTCCCGCCGATCCT AACCGTAAGACTATATCGTGTCCCGCAGGTTCTCGATTCCGAAGGCAGTT CCTACGCAAGCGATGTCTACAGCTTCGGGATAGTGGTTTGGGAGGTGATC TCGAGGAAGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1928:8667..14226+

>mRNA_L-elsbetiae_contig1928.5706.1 ID=mRNA_L-elsbetiae_contig1928.5706.1|Name=mRNA_L-elsbetiae_contig1928.5706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3342bp|location=Sequence derived from alignment at L-elsbetiae_contig1928:8667..14226+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGACAACCGAACGGGACGAAGTTGCCCAATTTCACCAAAGGCGACG
CGCAGGGGATGCAGCTTCTACCGCCGGCGGGCCCAAACCGGACGAAGCCT
CAGGCCGCGCTGTCCCTGGAGCCTCCTCGGATGCCGGCCGTCGAAACTCC
GGCGGTGACATCGGGATTGGCCATGCCGTCTTGGCGGCAGCACAGGAGCT
GGCGCTTCATTGCCAGGTCCCTGGCGTTAGCGAGGCGGCGGCAGCAGTGT
GCATCATGGCCAACATGGCGACGGATAGCCGCGACAACGTCAGGGCGAGT
GAATCAAGACTCCGACTGTGCCGCACGATCGTTTTGGCGCTAAAGCGGGC
GGCAAAGGTGGCTGAGAAGATGTCGACAACCGAACGGGACGAAGTTGCCC
AATTTCACCAAAGGCGACGCGCAGGGGATGCAGCTTCTACCGCCGGCGGG
CCCAAACCGGACGAAGCCTCAGGCCGCGCTGTCCCTGGAGCCTCCTCGGA
TGCCGGCCGTCGAAACTCCGGCGGTGACATCGGGATTGGCCATGCCGTCT
TGGCGGCAGCACAGGAGCTGGCGCTTCATTGCCAGGTCCCTGGCGTTAGC
GAGGCGGCGGCAGCAGTGTGCATCATGGCCAACATGGCGACGGATAGCCG
CGACAACGTCAGGGCGAGTGAATCAAGACTCCGACTGTGCCGCACGATCG
TTTTGGCGCTAAAGCGGGCGGCAAAGGTGGCTGAGAAGGGTGAGGACACG
ATCGGGGAGGTGGCGCGTGTCTTGATCGAAGAAGTGCACGAGGCCATCTA
CGATCTGGTGGAACTGATTCAAACATTCCACGGTAAGAACAAGCTTTCGA
AGTTGTTCATGTCGACGCTGTTCAAGCGGCGCCAGGAGGAGCTAGATGCC
GTGGTGGACCGAGCAATCATGCGCCTGCAGGGTGAGGACACGATCGGGGA
GGTGGCGCGTGTCTTGATCGAAGAAGTGCACGAGGCCATCTACGATCTGG
TGGAACTGATTCAAACATTCCACGGTAAGAACAAGCTTTCGAAGTTGTTC
ATGTCGACGCTGTTCAAGCGGCGCCAGGAGGAGCTAGATGCCGTGGTGGA
CCGAGCAATCATGCGCCTGCAGTTGGGCCTGCAGCTGCACGTAGGCCAAG
ACGTGAACGCAGTCAAGGCAGCCCAAGAGGACATCAAGGATGGCTTGAAG
TCCGTCAAGGAGGAGATGCACCTCTACCAGTTGGGCCTGCAGCTGCACGT
AGGCCAAGACGTGAACGCAGTCAAGGCAGCCCAAGAGGACATCAAGGATG
GCTTGAAGTCCGTCAAGGAGGAGATGCACCTCTACCAGCGTTCCATCACC
GAGGCCGAACTGGAGTCTGTGGTAGAGGCTCGTAGCATCAAGCGGCGGCG
CAAGCTTGATCAAGTCGAGATTCCCGAGGAACACTTGTCCATGACAGACG
AACTGTTGGGAAAGGGAGGCTTTGGCGAAGTGTACGTGGCCGATTATAAC
GGTCACAATGCAGCGGTGAAGCGTTCCATCACCGAGGCCGAACTGGAGTC
TGTGGTAGAGGCTCGTAGCATCAAGCGGCGGCGCAAGCTTGATCAAGTCG
AGATTCCCGAGGAACACTTGTCCATGACAGACGAACTGTTGGGAAAGGGA
GGCTTTGGCGAAGTGTACGTGGCCGATTATAACGGTCACAATGCAGCGGT
GAAGGTGATTCATATCGCCCACGACGTGGGCCCACTTGACGAGAACCAAA
GGCGACGGGAGACCAGCCAGCGCAGAGCGTTTTTGCGGGAGCTTGAAGCC
ATGATCCGCCTCCGAAGCGACAATACGGTCAACGTCTACGGAGCAGTGAC
GTCTCTGCCAGATCGGATGATGCTCGTCATGGAGCTGCTCGCTGGCGGAG
ATCTCCTCGCGTTGCTGAGGGAGTCAAAGGAGCCATTCCCCGAGGAGCAT
TCCAGGCGTATCATCCGAGATATCTGCACCGGCATGGCCTTCCTGCACAG
CAAAAATACTGTCCACGGCGACCTCAAGTCGGCCAACGTACTTCTCGATG
GTGACGGCAGGGCTAAGGTGATCGTGTCGGTCGTGGGCGTCAATTTGCTC
ATGTGCAAATCTTGGGTCACGCTCGCTTTCTGCAGTGTTGTGTTTTTCGT
CTCTGATAGCTCCATGACTTGCTTTTCCGAGGTGGTGGTTGTCTTAGGCA
TATTTATGTACGGGAAGCTGTTTCTACATCATCGACCTCGAGACCCCTTC
GTTACAGAGGCGTGCCGTTACATTACGGACACCGGGGTATTGGTTGTTCT
GGTTATTTCCGACAGAAACTGGTACCTGGTCCCGCTACCAAACACTGCCG
TAGAAAAGGGTCTACGGAGTACAAGCTTCCATATCGTATCGAACACTTCC
GTGCGTTTGATACCTGCAGAATTGCCATCGAAATCATACGAGGGTACGGA
GGTGTTGGATCCCGTGCCTTCCGTGAGCTCGACGCAGAATCCCATACCCT
TCCAACCACGCTTTCCTACATAGGTGATTCATATCGCCCACGACGTGGGC
CCACTTGACGAGAACCAAAGGCGACGGGAGACCAGCCAGCGCAGAGCGTT
TTTGCGGGAGCTTGAAGCCATGATCCGCCTCCGAAGCGACAATACGGTCA
ACGTCTACGGAGCAGTGACGTCTCTGCCAGATCGGATGATGCTCGTCATG
GAGCTGCTCGCTGGCGGAGATCTCCTCGCGTTGCTGAGGGAGTCAAAGGA
GCCATTCCCCGAGGAGCATTCCAGGCGTATCATCCGAGATATCTGCACCG
GCATGGCCTTCCTGCACAGCAAAAATACTGTCCACGGCGACCTCAAGTCG
GCCAACGTACTTCTCGATGGTGACGGCAGGGCTAAGGTGATCGTGTCGGT
CGTGGGCGTCAATTTGCTCATGTGCAAATCTTGGGTCACGCTCGCTTTCT
GCAGTGTTGTGTTTTTCGTCTCTGATAGCTCCATGACTTGCTTTTCCGAG
GTGGTGGTTGTCTTAGGCATATTTATGTACGGGAAGCTGTTTCTACATCA
TCGACCTCGAGACCCCTTCGTTACAGAGGCGTGCCGTTACATTACGGACA
CCGGGGTATTGGTTGTTCTGGTTATTTCCGACAGAAACTGGTACCTGGTC
CCGCTACCAAACACTGCCGTAGAAAAGGGTCTACGGAGTACAAGCTTCCA
TATCGTATCGAACACTTCCGTGCGTTTGATACCTGCAGAATTGCCATCGA
AATCATACGAGGGTACGGAGGTGTTGGATCCCGTGCCTTCCGTGAGCTCG
ACGCAGAATCCCATACCCTTCCAACCACGCTTTCCTACATAG
back to top