Homology
BLAST of mRNA_L-elsbetiae_contig1915.5653.1 vs. uniprot
Match:
D8LB50_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB50_ECTSI)
HSP 1 Score: 72.4 bits (176), Expect = 2.400e-10
Identity = 60/173 (34.68%), Postives = 75/173 (43.35%), Query Frame = -1
Query: 527 GIGVDAGIVDRLQATRSEHRAAERAEAPXXXXXXXXXXXXXXXXXXXXXXLASASPPLPGKNRSVHGFGAPSRRSDAVGAPAAWRERAEFANRPGASTITAAANETPAAGLPRGPLCGAAVDGDRGSGAIVRGASFCRALWSCLREEVLGEGPWVSWLVPTPARLSPAAEERV 1045
GI V AG VDR+QA +RAA +A A PLPG R P DA + +E + A RP +++ + A LPR AV GD SG + R LW + +E+LGEG WV W VPTPARLSP E+RV
Sbjct: 299 GIRVHAGTVDRMQAAAPGYRAAGQAGALGAAPPDSRRQDGWPGLLPTRRECPPGHLPLPGDGRVT-----PVLDEDATSSTG--QELTQGARRPASAS---SGGFEVAVSLPRATP--GAVAGDAASGGLGLRFRVIRGLWETVHQEILGEGAWVLWFVPTPARLSPELEQRV 459
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1915.5653.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 2.40e-10 / Id = 34.68 Sequence D8LB50_ECTSI
Match Name E-value Identity Description
D8LB50_ECTSI 2.400e-10 34.68 Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 1
Model size 1045
Cds size 573
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815795.6790786-UTR-L-elsbetiae_contig1915:16920..17179 1622815795.6790786-UTR-L-elsbetiae_contig1915:16920..17179 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig1915 16921..17179 +
1691683107.9970047-UTR-L-elsbetiae_contig1915:16920..17179 1691683107.9970047-UTR-L-elsbetiae_contig1915:16920..17179 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig1915 16921..17179 +
1622815795.7032828-UTR-L-elsbetiae_contig1915:17752..17965 1622815795.7032828-UTR-L-elsbetiae_contig1915:17752..17965 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig1915 17753..17965 +
1691683108.0277593-UTR-L-elsbetiae_contig1915:17752..17965 1691683108.0277593-UTR-L-elsbetiae_contig1915:17752..17965 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig1915 17753..17965 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815795.691803-CDS-L-elsbetiae_contig1915:17179..17752 1622815795.691803-CDS-L-elsbetiae_contig1915:17179..17752 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1915 17180..17752 +
1691683108.0162404-CDS-L-elsbetiae_contig1915:17179..17752 1691683108.0162404-CDS-L-elsbetiae_contig1915:17179..17752 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1915 17180..17752 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1915.5653.1
>prot_L-elsbetiae_contig1915.5653.1 ID=prot_L-elsbetiae_contig1915.5653.1|Name=mRNA_L-elsbetiae_contig1915.5653.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=191bp
MKTMGYPFENETVNQKWNLTHRDSRLPRASNGIPYSDVILVQPSRKTPKL LYICSASTPREAPGLPSPRRESPKPKGIRLPDVLSPRVADALLCRRRQPG RRRHKPRHPRPLAQHLLTQATPQRSTERSASHNRPGSPVAIDSSPAKRTP RQACGRGFVGGGGNGASTRAIGELGALSPSSRRTYSIRPP* back to top mRNA from alignment at L-elsbetiae_contig1915:16921..17965+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1915.5653.1 ID=mRNA_L-elsbetiae_contig1915.5653.1|Name=mRNA_L-elsbetiae_contig1915.5653.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1045bp|location=Sequence derived from alignment at L-elsbetiae_contig1915:16921..17965+ (Laminarionema elsbetiae ELsaHSoW15)TGGGGTTTGCGTACATACATACCGTAGGTGACACAAGATACCACCCCCCC
TGAACAGATTTTCAAAGCTCGATTCCTCCCCAGTAAGAAGAGTGCCAGTG
CCGAAAGGAGGTGGCGTCGGAAACATCTAGTCGAGGGCTGTCCGAAAATG
TGTCGTTTGGTGCTGGCACCCTCTTTGTTACGGCATAATGAAGCTCTAAA
AGTCGGACCAGGGGAGGTGGTATATTGTGTCACCTACGGTACCCGCTTGC
GGAACCCAA ATGAAAACGATGGGATATCCTTTTGAAAATGAAACAGTTAA
TCAAAAATGGAACCTAACCCACAGAGACAGCCGACTCCCACGAGCTTCTA
ACGGTATTCCATATAGTGACGTAATATTGGTCCAGCCCAGTAGAAAAACA
CCTAAATTGTTGTACATATGCTCTGCCTCAACACCACGAGAGGCGCCCGG
TCTACCAAGCCCCAGAAGAGAGTCGCCGAAGCCGAAGGGTATACGCCTGC
CTGATGTTCTATCGCCGCGCGTAGCAGACGCGCTCCTCTGCCGCAGGCGA
CAGCCTGGCCGGCGTCGGCACAAGCCACGACACCCACGGCCCCTCGCCCA
GCACCTCCTCACGCAGGCAACTCCACAGCGCTCGACAGAAAGAAGCGCCT
CTCACAATCGCCCCGGATCCCCGGTCGCCATCGACAGCAGCCCCGCAAAG
CGGACCCCGCGGCAGGCCTGCGGCCGGGGTTTCGTTGGCGGCGGCGGTAA
TGGTGCTAGCACCAGGGCGATTGGCGAACTCGGCGCGCTCTCTCCAAGCA
GCCGGCGCACCTACAGCATCCGACCGCCGTGA CGGCGCGCCAAACCCATG
AACGCTCCGGTTCTTGCCGGGAAGGGGCGGCGAGGCGGAGGCCAGGGCGG
CCGCCGCAGGAAGGCGCGCCGCAGCAGCAGCAGCAGCATGCGGCGGCGGC
GGCGGCGGCGGCGGCGCTTCCGCCCTCTCTGCCGCGCGATGCTCCGACCT
CGTAGCCTGCAAGCGGTCGACGATGCCGGCGTCGACACCAATCCC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1915:16921..17965+
>mRNA_L-elsbetiae_contig1915.5653.1 ID=mRNA_L-elsbetiae_contig1915.5653.1|Name=mRNA_L-elsbetiae_contig1915.5653.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig1915:16921..17965+ (Laminarionema elsbetiae ELsaHSoW15) ATGAAAACGATGGGATATCCTTTTGAAAATGAAACAGTTAATCAAAAATG GAACCTAACCCACAGAGACAGCCGACTCCCACGAGCTTCTAACGGTATTC CATATAGTGACGTAATATTGGTCCAGCCCAGTAGAAAAACACCTAAATTG TTGTACATATGCTCTGCCTCAACACCACGAGAGGCGCCCGGTCTACCAAG CCCCAGAAGAGAGTCGCCGAAGCCGAAGGGTATACGCCTGCCTGATGTTC TATCGCCGCGCGTAGCAGACGCGCTCCTCTGCCGCAGGCGACAGCCTGGC CGGCGTCGGCACAAGCCACGACACCCACGGCCCCTCGCCCAGCACCTCCT CACGCAGGCAACTCCACAGCGCTCGACAGAAAGAAGCGCCTCTCACAATC GCCCCGGATCCCCGGTCGCCATCGACAGCAGCCCCGCAAAGCGGACCCCG CGGCAGGCCTGCGGCCGGGGTTTCGTTGGCGGCGGCGGTAATGGTGCTAG CACCAGGGCGATTGGCGAACTCGGCGCGCTCTCTCCAAGCAGCCGGCGCA CCTACAGCATCCGACCGCCGTGAATGAAAACGATGGGATATCCTTTTGAA AATGAAACAGTTAATCAAAAATGGAACCTAACCCACAGAGACAGCCGACT CCCACGAGCTTCTAACGGTATTCCATATAGTGACGTAATATTGGTCCAGC CCAGTAGAAAAACACCTAAATTGTTGTACATATGCTCTGCCTCAACACCA CGAGAGGCGCCCGGTCTACCAAGCCCCAGAAGAGAGTCGCCGAAGCCGAA GGGTATACGCCTGCCTGATGTTCTATCGCCGCGCGTAGCAGACGCGCTCC TCTGCCGCAGGCGACAGCCTGGCCGGCGTCGGCACAAGCCACGACACCCA CGGCCCCTCGCCCAGCACCTCCTCACGCAGGCAACTCCACAGCGCTCGAC AGAAAGAAGCGCCTCTCACAATCGCCCCGGATCCCCGGTCGCCATCGACA GCAGCCCCGCAAAGCGGACCCCGCGGCAGGCCTGCGGCCGGGGTTTCGTT GGCGGCGGCGGTAATGGTGCTAGCACCAGGGCGATTGGCGAACTCGGCGC GCTCTCTCCAAGCAGCCGGCGCACCTACAGCATCCGACCGCCGTGA back to top