mRNA_L-elsbetiae_contig18928.5560.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18928.5560.1
Unique NamemRNA_L-elsbetiae_contig18928.5560.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18928.5560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18928contigL-elsbetiae_contig18928:1535..1981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size449
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.92962-UTR-L-elsbetiae_contig18928:1534..16181622815786.92962-UTR-L-elsbetiae_contig18928:1534..1618Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18928 1535..1618 +
1691683102.1765573-UTR-L-elsbetiae_contig18928:1534..16181691683102.1765573-UTR-L-elsbetiae_contig18928:1534..1618Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18928 1535..1618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.942452-CDS-L-elsbetiae_contig18928:1618..19811622815786.942452-CDS-L-elsbetiae_contig18928:1618..1981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18928 1619..1981 +
1691683102.1914709-CDS-L-elsbetiae_contig18928:1618..19811691683102.1914709-CDS-L-elsbetiae_contig18928:1618..1981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18928 1619..1981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18928.5560.1prot_L-elsbetiae_contig18928.5560.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18928 1619..1981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18928.5560.1

>prot_L-elsbetiae_contig18928.5560.1 ID=prot_L-elsbetiae_contig18928.5560.1|Name=mRNA_L-elsbetiae_contig18928.5560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MSLRVDRPSLSMYWVIDVPLFWRSTAVEKTFSPKGEAGICKTWRNSKQSS
VFWTRRKENAAVFEAGGEGKRRGRRHDKRRLGGCSEVLASNPRHPPPHRG
WPRTGYSTQVAHRRHGNGPER
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mRNA from alignment at L-elsbetiae_contig18928:1535..1981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18928.5560.1 ID=mRNA_L-elsbetiae_contig18928.5560.1|Name=mRNA_L-elsbetiae_contig18928.5560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=447bp|location=Sequence derived from alignment at L-elsbetiae_contig18928:1535..1981+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGGTGGGCGATGGCCGGAGATCCCCCTTTGTGGGACGCGAACCCCAGC
CAGTGCCCCCCCGCCCCCCTCGTAAACATGGGTGATGTCTTTACGTGTAG
ACCGACCTAGTCTTTCCATGTACTGGGTGATAGATGTGCCGCTCTTTTGG
AGATCGACCGCCGTCGAAAAAACCTTTTCCCCAAAAGGAGAGGCAGGCAT
ATGCAAAACATGGAGAAACAGCAAGCAAAGCAGCGTGTTTTGGACCAGAA
GGAAGGAAAACGCAGCAGTTTTTGAGGCCGGGGGGGAGGGCAAGCGCAGA
GGCCGGAGACACGACAAAAGGAGATTGGGGGGGTGTTCGGAGGTGCTAGC
TTCCAACCCACGGCACCCCCCCCCCCACCGTGGATGGCCACGGACGGGGT
ACAGCACTCAAGTGGCGCATCGCCGGCACGGAAATGGACCAGAAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18928:1535..1981+

>mRNA_L-elsbetiae_contig18928.5560.1 ID=mRNA_L-elsbetiae_contig18928.5560.1|Name=mRNA_L-elsbetiae_contig18928.5560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig18928:1535..1981+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTTACGTGTAGACCGACCTAGTCTTTCCATGTACTGGGTGATAGA
TGTGCCGCTCTTTTGGAGATCGACCGCCGTCGAAAAAACCTTTTCCCCAA
AAGGAGAGGCAGGCATATGCAAAACATGGAGAAACAGCAAGCAAAGCAGC
GTGTTTTGGACCAGAAGGAAGGAAAACGCAGCAGTTTTTGAGGCCGGGGG
GGAGGGCAAGCGCAGAGGCCGGAGACACGACAAAAGGAGATTGGGGGGGT
GTTCGGAGGTGCTAGCTTCCAACCCACGGCACCCCCCCCCCCACCGTGGA
TGGCCACGGACGGGGTACAGCACTCAAGTGGCGCATCGCCGGCACGGAAA
TGGACCAGAAAGGATGTCTTTACGTGTAGACCGACCTAGTCTTTCCATGT
ACTGGGTGATAGATGTGCCGCTCTTTTGGAGATCGACCGCCGTCGAAAAA
ACCTTTTCCCCAAAAGGAGAGGCAGGCATATGCAAAACATGGAGAAACAG
CAAGCAAAGCAGCGTGTTTTGGACCAGAAGGAAGGAAAACGCAGCAGTTT
TTGAGGCCGGGGGGGAGGGCAAGCGCAGAGGCCGGAGACACGACAAAAGG
AGATTGGGGGGGTGTTCGGAGGTGCTAGCTTCCAACCCACGGCACCCCCC
CCCCCACCGTGGATGGCCACGGACGGGGTACAGCACTCAAGTGGCGCATC
GCCGGCACGGAAATGGACCAGAAAGG
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