mRNA_L-elsbetiae_contig1881.5510.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1881.5510.1
Unique NamemRNA_L-elsbetiae_contig1881.5510.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1881.5510.1 vs. uniprot
Match: D8LQS9_ECTSI (Cytochrome P450 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.200e-19
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 3 
Query:   93 AKSDLVVPTTSGTKYQVKKGDNLCCEQALCQMDPAVFGPDAREFNPWRFVDNP 251
            AK DLVVPT+SG KY+VKKG+ L  EQAL QMDP+VFGPDAREFNP RFVDNP
Sbjct:  153 AKMDLVVPTSSGKKYKVKKGELLMMEQALGQMDPSVFGPDAREFNPERFVDNP 205
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BLAST of mRNA_L-elsbetiae_contig1881.5510.1 vs. uniprot
Match: A0A6H5KGZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ6_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.940e-19
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 3 
Query:   93 AKSDLVVPTTSGTKYQVKKGDNLCCEQALCQMDPAVFGPDAREFNPWRFVDNP 251
            AK DLVVPT+SG KYQVKKG+ L  EQAL QMDP+VFGPDAREFNP RFVDNP
Sbjct:  377 AKMDLVVPTSSGKKYQVKKGELLMMEQALGQMDPSVFGPDAREFNPERFVDNP 429
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BLAST of mRNA_L-elsbetiae_contig1881.5510.1 vs. uniprot
Match: A0A6H5KDN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDN7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.340e-18
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 3 
Query:  102 DLVVPTTSGTKYQVKKGDNLCCEQALCQMDPAVFGPDAREFNPWRFVDNP 251
            D++VPT+SG KY+VKKGD L C+QAL QMDP+VFGPDAREF P RFV NP
Sbjct:    2 DVIVPTSSGWKYKVKKGDVLLCKQALEQMDPSVFGPDAREFKPERFVGNP 51
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BLAST of mRNA_L-elsbetiae_contig1881.5510.1 vs. uniprot
Match: A0A6H5JAC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC4_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.070e-14
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 3 
Query:   93 AKSDLVVPTTSGTKYQVKKGDNLCCEQALCQMDPAVFGPDAREFNPWRFVDNP 251
            A+ DLVVPT+SG +YQV+KGD LCC   L  +D AVFG DA EF P RF+ NP
Sbjct:   85 AQMDLVVPTSSGARYQVRKGDMLCCHHPLIHIDEAVFGADATEFKPKRFIGNP 137
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BLAST of mRNA_L-elsbetiae_contig1881.5510.1 vs. uniprot
Match: A0A1L3HS58_ECTSI (Epoxyalcohol synthase CYP5164B1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A1L3HS58_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.850e-14
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 3 
Query:   93 AKSDLVVPTTSGTKYQVKKGDNLCCEQALCQMDPAVFGPDAREFNPWRFVDNP 251
            A+ DLVVPT+SG +YQV+KGD LCC   L  +D AVFG DA EF P RF+ NP
Sbjct:  342 AQMDLVVPTSSGARYQVRKGDMLCCHHPLIHIDEAVFGADATEFKPKRFIGNP 394
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BLAST of mRNA_L-elsbetiae_contig1881.5510.1 vs. uniprot
Match: A0A3E2H9Z9_SCYLI (Uncharacterized protein (Fragment) n=1 Tax=Scytalidium lignicola TaxID=5539 RepID=A0A3E2H9Z9_SCYLI)

HSP 1 Score: 54.7 bits (130), Expect = 9.460e-7
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 3 
Query:  114 PTTSGTKYQVKKGDNLCCEQALCQMDPAVFGPDAREFNPWRFVDN 248
            P   G KY+VKKG  +    A C  DPAV+GPDA EFNP R +D+
Sbjct:  343 PVIIGGKYEVKKGQAIAAILAECHRDPAVYGPDADEFNPERMLDD 387
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1881.5510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LQS9_ECTSI2.200e-1979.25Cytochrome P450 n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5KGZ6_9PHAE2.940e-1981.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDN7_9PHAE3.340e-1874.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAC4_9PHAE1.070e-1462.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1L3HS58_ECTSI5.850e-1462.26Epoxyalcohol synthase CYP5164B1 n=2 Tax=Ectocarpus... [more]
A0A3E2H9Z9_SCYLI9.460e-753.33Uncharacterized protein (Fragment) n=1 Tax=Scytali... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1881contigL-elsbetiae_contig1881:21201..21804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.9388106-CDS-L-elsbetiae_contig1881:21202..213141622815782.9388106-CDS-L-elsbetiae_contig1881:21202..21314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1881 21203..21314 -
1691683099.5255795-CDS-L-elsbetiae_contig1881:21202..213141691683099.5255795-CDS-L-elsbetiae_contig1881:21202..21314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1881 21203..21314 -
1622815782.950624-CDS-L-elsbetiae_contig1881:21664..218041622815782.950624-CDS-L-elsbetiae_contig1881:21664..21804Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1881 21665..21804 -
1691683099.5379128-CDS-L-elsbetiae_contig1881:21664..218041691683099.5379128-CDS-L-elsbetiae_contig1881:21664..21804Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1881 21665..21804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1881.5510.1prot_L-elsbetiae_contig1881.5510.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1881 21203..21804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1881.5510.1

>prot_L-elsbetiae_contig1881.5510.1 ID=prot_L-elsbetiae_contig1881.5510.1|Name=mRNA_L-elsbetiae_contig1881.5510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
ARKDRRESNALLPLPPLSFHTRSVSLDHRRLPRVTSSYPPPPAPSIRSRR
GTICVASRLFARWTRLCSVLMLASSTPGASSTTP
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mRNA from alignment at L-elsbetiae_contig1881:21201..21804-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1881.5510.1 ID=mRNA_L-elsbetiae_contig1881.5510.1|Name=mRNA_L-elsbetiae_contig1881.5510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=604bp|location=Sequence derived from alignment at L-elsbetiae_contig1881:21201..21804- (Laminarionema elsbetiae ELsaHSoW15)
GCACGCAAAGACCGCCGTGAAAGCAACGCGCTTCTCCCTTTACCCCCTCT
CTCTTTTCACACGCGCTCTGTCTCGCTGGATCATCGCAGATTGCCAAGAG
TGACCTCGTCGTACCCACCACCTCCGGCACCAAGTATCAGGTAAGTTCGC
CCCCGCGCGCAGTGTTTGTTTCTCCTCGTGGTGGTGTGGTGTGGTAGTGC
TAAAAATCTGCATCCACCCGTCACGTGTTTGTTGGGGCTAACTGGCGTGG
AATGACATCGAGTTGCGACCTCTGCCACCAAAAAGGCAGAGGAGAGAGAG
AAGCGGGGATGCCAGAGAAAACAATAAATAAATACAGTAGTACTTCAGTA
AATTTGCCCGTCGAGCACTGGAAATAAATAAATGTGAAGAAGAAAAAAGA
AAGCGTACGAGTGTACATATTTTACTGTACAGTAGGATGTGAGCGACAAA
TCGACGATGCCATCTGTTTGATCTGTTGTTGTTCATGCAGGTCAAGAAGG
GGGACAATCTGTGTTGCGAGCAGGCTCTTTGCCAGATGGACCCGGCTGTG
TTCGGTCCTGATGCTCGCGAGTTCAACCCCTGGCGCTTCGTCGACAACCC
CGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1881:21201..21804-

>mRNA_L-elsbetiae_contig1881.5510.1 ID=mRNA_L-elsbetiae_contig1881.5510.1|Name=mRNA_L-elsbetiae_contig1881.5510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig1881:21201..21804- (Laminarionema elsbetiae ELsaHSoW15)
GCACGCAAAGACCGCCGTGAAAGCAACGCGCTTCTCCCTTTACCCCCTCT
CTCTTTTCACACGCGCTCTGTCTCGCTGGATCATCGCAGATTGCCAAGAG
TGACCTCGTCGTACCCACCACCTCCGGCACCAAGTATCAGGCACGCAAAG
ACCGCCGTGAAAGCAACGCGCTTCTCCCTTTACCCCCTCTCTCTTTTCAC
ACGCGCTCTGTCTCGCTGGATCATCGCAGATTGCCAAGAGTGACCTCGTC
GTACCCACCACCTCCGGCACCAAGTATCAGGTCAAGAAGGGGGACAATCT
GTGTTGCGAGCAGGCTCTTTGCCAGATGGACCCGGCTGTGTTCGGTCCTG
ATGCTCGCGAGTTCAACCCCTGGCGCTTCGTCGACAACCCCGGTCAAGAA
GGGGGACAATCTGTGTTGCGAGCAGGCTCTTTGCCAGATGGACCCGGCTG
TGTTCGGTCCTGATGCTCGCGAGTTCAACCCCTGGCGCTTCGTCGACAAC
CCCG
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