mRNA_L-elsbetiae_contig18806.5508.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18806.5508.1
Unique NamemRNA_L-elsbetiae_contig18806.5508.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18806.5508.1 vs. uniprot
Match: A0A6H5L341_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L341_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 4.820e-39
Identity = 91/229 (39.74%), Postives = 131/229 (57.21%), Query Frame = 3 
Query:  519 APPVAPAAAPPKALPAGAKILQKRKAVFWNTPVRPMLFLLRSCFDSTLEMDMPRLKMLTKDKANITQQAADQVLTLTDCKIEYRFPPMAPDVVPPTAMPPAVHYTTSIEVLLTVMAFGTENAPGICLERIRAWKRELELVQTRLTAYLQLHYVRLAHFDTKVRNMLVEAINEGLQEGFHVLALQGCELHRRYPDGPPVAGTGDPVPTPRFKRLNNLLTPHDSNSLAERA 1205
            AP VA +AAPP    AG+K+ +K +A  W     P+  L R  FD+   +D+P +KM+  + ++IT+Q   Q+ +LTD KIE+ FPP + +     AMP  VH+ T I VL   + +G + A      R+ AW+ E   +  +L  YL LHY  L   + +VRN+L++AIN GL++GF +L     +L   + DGPP A   D VP PRFK L  LL    + SLAE+A
Sbjct:  171 APVVAASAAPPAPATAGSKMTEKMRAEDWKA-TGPLWLLARGGFDTRAPVDVPFVKMVAGEYSHITEQGGKQMCSLTDIKIEHCFPPKSANAAL-AAMPVTVHFDTFITVLFKTIEYGMDTAEENAKLRVAAWRAEFASITRKLATYLTLHYTGLQPHENRVRNVLLDAINRGLEDGFRILHKMAYDLRWTHQDGPPTADATDAVPFPRFKLLKTLLEEDHTQSLAEKA 397
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BLAST of mRNA_L-elsbetiae_contig18806.5508.1 vs. uniprot
Match: A0A6H5JGT0_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT0_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 4.450e-38
Identity = 91/229 (39.74%), Postives = 131/229 (57.21%), Query Frame = 3 
Query:  519 APPVAPAAAPPKALPAGAKILQKRKAVFWNTPVRPMLFLLRSCFDSTLEMDMPRLKMLTKDKANITQQAADQVLTLTDCKIEYRFPPMAPDVVPPTAMPPAVHYTTSIEVLLTVMAFGTENAPGICLERIRAWKRELELVQTRLTAYLQLHYVRLAHFDTKVRNMLVEAINEGLQEGFHVLALQGCELHRRYPDGPPVAGTGDPVPTPRFKRLNNLLTPHDSNSLAERA 1205
            AP VA +AAPP    AG+K+ +K +A  W     P+  L R  FD+   +D+P +KM+  + ++IT+Q   Q+ +LTD KIE+ FPP + +     AMP  VH+ T I VL   + +G + A      R+ AW+ E   +  +L  YL LHY  L   + +VRN+L++AIN GL++GF +L     +L   + DGPP A   D VP PRFK L  LL    + SLAE+A
Sbjct:  163 APVVAASAAPPAPATAGSKMTEKMRAEDWKA-TGPLWLLARGGFDTRAPVDVPFVKMVAGEYSHITEQGGKQMCSLTDIKIEHCFPPKSANAAL-AAMPVTVHFDTFITVLFKTIEYGMDTAEENAKLRVAAWRAEFASITRKLATYLTLHYTGLQPHENRVRNVLLDAINRGLEDGFRILHKMAYDLRWTHQDGPPTADATDAVPFPRFKLLKTLLEEDHTQSLAEKA 389
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BLAST of mRNA_L-elsbetiae_contig18806.5508.1 vs. uniprot
Match: A0A6H5JUF5_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF5_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 8.520e-36
Identity = 90/213 (42.25%), Postives = 114/213 (53.52%), Query Frame = 3 
Query:  564 AGAKIL-QKRKAVFWNTPVRPMLFLLRSCFDSTLEMDMPRLKMLTKDKANITQQAADQVLTLTDCKIEYRFPPMAPDVVPPTAMPPAVHYTTSIEVLLTVMAFGTENAPGICLERIRAWKRELELVQTRLTAYLQLHYVRLAHFDTKVRNMLVEAINEGLQEGFHVLALQGCELHRRYPDGPPVAGTGDPVPTPRFKRLNNLLTPHDSNSLAE 1199
            AGAKI+ +KRK V+WNT V PM FLLRS  D   EMD  RL +LTK KA+IT+Q A+++L+L +CKIE+ FP +                                N  G                 T    Y QL Y R A   T+ RN LV+ +N G+ EGF+ L LQGC L++RYPDGPP  G+GD VPTP F+ L NL     S+SLA+
Sbjct:  693 AGAKIIIEKRKTVYWNTTVEPMFFLLRSSEDIGPEMDEDRLALLTKQKAHITKQVAEEILSLKNCKIEHFFPSI--------------------------------NREGC---------------GTATNNYPQLKYTRFAPHATEARNALVDGVNNGIDEGFYNLGLQGCALNQRYPDGPPAVGSGDVVPTPTFRPLKNLTGQEHSSSLAQ 858
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18806.5508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L341_9PHAE4.820e-3939.74Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGT0_9PHAE4.450e-3839.74Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUF5_9PHAE8.520e-3642.25C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18806contigL-elsbetiae_contig18806:1730..2983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1254
Cds size1056
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18806.5508.1prot_L-elsbetiae_contig18806.5508.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18806 1888..2943 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.6092792-UTR-L-elsbetiae_contig18806:1729..18871622815782.6092792-UTR-L-elsbetiae_contig18806:1729..1887Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18806 1730..1887 +
1691683099.3089027-UTR-L-elsbetiae_contig18806:1729..18871691683099.3089027-UTR-L-elsbetiae_contig18806:1729..1887Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18806 1730..1887 +
1622815782.630952-UTR-L-elsbetiae_contig18806:2943..29831622815782.630952-UTR-L-elsbetiae_contig18806:2943..2983Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18806 2944..2983 +
1691683099.3283873-UTR-L-elsbetiae_contig18806:2943..29831691683099.3283873-UTR-L-elsbetiae_contig18806:2943..2983Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18806 2944..2983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.6196327-CDS-L-elsbetiae_contig18806:1887..29431622815782.6196327-CDS-L-elsbetiae_contig18806:1887..2943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18806 1888..2943 +
1691683099.318996-CDS-L-elsbetiae_contig18806:1887..29431691683099.318996-CDS-L-elsbetiae_contig18806:1887..2943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18806 1888..2943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18806.5508.1

>prot_L-elsbetiae_contig18806.5508.1 ID=prot_L-elsbetiae_contig18806.5508.1|Name=mRNA_L-elsbetiae_contig18806.5508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=352bp
MADAVNAANAAAEAAAAAAAEKGAAVEAAAAAAAVVDGQPAGGNISPGPE
EGAGGGALAAVLVQLLLAGQQQQAAQIADTLQQQQEQQQQQHQQQHQHQQ
QQAPPPAVLAPPALPAGDLIAPPVAPAAAPPKALPAGAKILQKRKAVFWN
TPVRPMLFLLRSCFDSTLEMDMPRLKMLTKDKANITQQAADQVLTLTDCK
IEYRFPPMAPDVVPPTAMPPAVHYTTSIEVLLTVMAFGTENAPGICLERI
RAWKRELELVQTRLTAYLQLHYVRLAHFDTKVRNMLVEAINEGLQEGFHV
LALQGCELHRRYPDGPPVAGTGDPVPTPRFKRLNNLLTPHDSNSLAERAL
L*
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mRNA from alignment at L-elsbetiae_contig18806:1730..2983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18806.5508.1 ID=mRNA_L-elsbetiae_contig18806.5508.1|Name=mRNA_L-elsbetiae_contig18806.5508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1254bp|location=Sequence derived from alignment at L-elsbetiae_contig18806:1730..2983+ (Laminarionema elsbetiae ELsaHSoW15)
TTTGCCTGCAAGACAGCCAAGAGGCGGAAGCAACTCGGAACTTATGACCT
ATCGAGGGAGCACCCCATCGGTTGCAGGAGCTGGCTAGCAGAGCCAGAGA
CGCGGAACAGCACAGTAGGAAGAGTGGAAGTAGGCCTCTGACCGATTTTT
CTCTCGAGATGGCTGACGCGGTCAACGCAGCTAATGCTGCGGCAGAGGCC
GCTGCCGCTGCCGCTGCCGAGAAGGGTGCGGCGGTTGAGGCCGCTGCCGC
CGCCGCGGCCGTCGTCGATGGTCAGCCTGCCGGCGGGAACATATCGCCCG
GCCCCGAAGAAGGTGCAGGCGGGGGGGCTCTGGCGGCGGTGCTCGTACAA
CTACTCCTCGCCGGCCAACAGCAGCAAGCGGCTCAGATCGCCGACACCCT
GCAGCAGCAGCAGGAGCAGCAGCAACAGCAGCACCAGCAACAGCACCAGC
ACCAGCAACAACAGGCGCCTCCTCCTGCGGTACTCGCTCCGCCGGCCCTG
CCAGCTGGAGACCTCATAGCGCCGCCAGTTGCCCCCGCCGCCGCTCCGCC
CAAAGCGTTACCTGCCGGAGCGAAGATCCTCCAGAAGAGGAAGGCCGTGT
TTTGGAACACACCGGTCAGACCCATGCTCTTCCTCCTGCGCAGCTGTTTC
GACAGCACCCTGGAGATGGACATGCCTCGTCTCAAGATGCTCACCAAAGA
CAAGGCGAACATCACCCAGCAGGCGGCGGACCAAGTCCTAACCCTGACAG
ACTGCAAGATCGAGTATCGTTTCCCGCCCATGGCCCCTGACGTCGTGCCG
CCCACCGCCATGCCCCCGGCAGTTCACTACACCACGTCCATCGAGGTGCT
CCTGACCGTGATGGCCTTCGGGACCGAAAACGCGCCGGGCATATGCCTCG
AGCGCATCAGGGCATGGAAGCGCGAGCTCGAGCTGGTGCAGACACGGCTC
ACCGCCTACCTGCAGCTTCACTACGTGCGGCTCGCCCACTTTGACACAAA
GGTGCGCAACATGCTCGTGGAGGCCATCAACGAGGGCCTTCAGGAAGGTT
TTCATGTACTCGCGTTGCAAGGCTGCGAGCTCCACCGGAGGTACCCCGAC
GGCCCGCCGGTGGCCGGTACGGGGGACCCCGTGCCTACACCACGGTTCAA
GCGCCTCAACAACCTCTTGACGCCCCACGACAGCAACAGCCTGGCCGAAC
GGGCTCTCCTGTGACCATCCACGGGGGCCACCGGCGGCACGAAGCGGAGG
GCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18806:1730..2983+

>mRNA_L-elsbetiae_contig18806.5508.1 ID=mRNA_L-elsbetiae_contig18806.5508.1|Name=mRNA_L-elsbetiae_contig18806.5508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2112bp|location=Sequence derived from alignment at L-elsbetiae_contig18806:1730..2983+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGACGCGGTCAACGCAGCTAATGCTGCGGCAGAGGCCGCTGCCGC
TGCCGCTGCCGAGAAGGGTGCGGCGGTTGAGGCCGCTGCCGCCGCCGCGG
CCGTCGTCGATGGTCAGCCTGCCGGCGGGAACATATCGCCCGGCCCCGAA
GAAGGTGCAGGCGGGGGGGCTCTGGCGGCGGTGCTCGTACAACTACTCCT
CGCCGGCCAACAGCAGCAAGCGGCTCAGATCGCCGACACCCTGCAGCAGC
AGCAGGAGCAGCAGCAACAGCAGCACCAGCAACAGCACCAGCACCAGCAA
CAACAGGCGCCTCCTCCTGCGGTACTCGCTCCGCCGGCCCTGCCAGCTGG
AGACCTCATAGCGCCGCCAGTTGCCCCCGCCGCCGCTCCGCCCAAAGCGT
TACCTGCCGGAGCGAAGATCCTCCAGAAGAGGAAGGCCGTGTTTTGGAAC
ACACCGGTCAGACCCATGCTCTTCCTCCTGCGCAGCTGTTTCGACAGCAC
CCTGGAGATGGACATGCCTCGTCTCAAGATGCTCACCAAAGACAAGGCGA
ACATCACCCAGCAGGCGGCGGACCAAGTCCTAACCCTGACAGACTGCAAG
ATCGAGTATCGTTTCCCGCCCATGGCCCCTGACGTCGTGCCGCCCACCGC
CATGCCCCCGGCAGTTCACTACACCACGTCCATCGAGGTGCTCCTGACCG
TGATGGCCTTCGGGACCGAAAACGCGCCGGGCATATGCCTCGAGCGCATC
AGGGCATGGAAGCGCGAGCTCGAGCTGGTGCAGACACGGCTCACCGCCTA
CCTGCAGCTTCACTACGTGCGGCTCGCCCACTTTGACACAAAGGTGCGCA
ACATGCTCGTGGAGGCCATCAACGAGGGCCTTCAGGAAGGTTTTCATGTA
CTCGCGTTGCAAGGCTGCGAGCTCCACCGGAGGTACCCCGACGGCCCGCC
GGTGGCCGGTACGGGGGACCCCGTGCCTACACCACGGTTCAAGCGCCTCA
ACAACCTCTTGACGCCCCACGACAGCAACAGCCTGGCCGAACGGGCTCTC
CTGTGAATGGCTGACGCGGTCAACGCAGCTAATGCTGCGGCAGAGGCCGC
TGCCGCTGCCGCTGCCGAGAAGGGTGCGGCGGTTGAGGCCGCTGCCGCCG
CCGCGGCCGTCGTCGATGGTCAGCCTGCCGGCGGGAACATATCGCCCGGC
CCCGAAGAAGGTGCAGGCGGGGGGGCTCTGGCGGCGGTGCTCGTACAACT
ACTCCTCGCCGGCCAACAGCAGCAAGCGGCTCAGATCGCCGACACCCTGC
AGCAGCAGCAGGAGCAGCAGCAACAGCAGCACCAGCAACAGCACCAGCAC
CAGCAACAACAGGCGCCTCCTCCTGCGGTACTCGCTCCGCCGGCCCTGCC
AGCTGGAGACCTCATAGCGCCGCCAGTTGCCCCCGCCGCCGCTCCGCCCA
AAGCGTTACCTGCCGGAGCGAAGATCCTCCAGAAGAGGAAGGCCGTGTTT
TGGAACACACCGGTCAGACCCATGCTCTTCCTCCTGCGCAGCTGTTTCGA
CAGCACCCTGGAGATGGACATGCCTCGTCTCAAGATGCTCACCAAAGACA
AGGCGAACATCACCCAGCAGGCGGCGGACCAAGTCCTAACCCTGACAGAC
TGCAAGATCGAGTATCGTTTCCCGCCCATGGCCCCTGACGTCGTGCCGCC
CACCGCCATGCCCCCGGCAGTTCACTACACCACGTCCATCGAGGTGCTCC
TGACCGTGATGGCCTTCGGGACCGAAAACGCGCCGGGCATATGCCTCGAG
CGCATCAGGGCATGGAAGCGCGAGCTCGAGCTGGTGCAGACACGGCTCAC
CGCCTACCTGCAGCTTCACTACGTGCGGCTCGCCCACTTTGACACAAAGG
TGCGCAACATGCTCGTGGAGGCCATCAACGAGGGCCTTCAGGAAGGTTTT
CATGTACTCGCGTTGCAAGGCTGCGAGCTCCACCGGAGGTACCCCGACGG
CCCGCCGGTGGCCGGTACGGGGGACCCCGTGCCTACACCACGGTTCAAGC
GCCTCAACAACCTCTTGACGCCCCACGACAGCAACAGCCTGGCCGAACGG
GCTCTCCTGTGA
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