mRNA_L-elsbetiae_contig18744.5485.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig18744.5485.1 vs. uniprot
Match: A0A6H5JLV4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLV4_9PHAE) HSP 1 Score: 197 bits (501), Expect = 3.750e-58 Identity = 93/111 (83.78%), Postives = 101/111 (90.99%), Query Frame = 1 Query: 7 YQSPWGARARLAKSEGMPQYVTFEPDRGGFNNIRMAMETVLVFARETGRTLVMPPAQKFYLLNKPAAEFADMFPIEYLSDYMDIISMEDFLKKEGLTGRLGQRPPGNKSSG 339 Y+SPWGA AR A+ EG PQYVTFEPD GGFNNIRMAME +LVFAR TGRTLVMP AQKFYLLN+PA EFADMFPIEYLSDYMD+I+ME+FLKKEGLTGRLG+ PPGNKSSG Sbjct: 122 YESPWGASARKAQEEGRPQYVTFEPDHGGFNNIRMAMEVMLVFARATGRTLVMPLAQKFYLLNRPAVEFADMFPIEYLSDYMDVITMEEFLKKEGLTGRLGKAPPGNKSSG 232
BLAST of mRNA_L-elsbetiae_contig18744.5485.1 vs. uniprot
Match: A0A7S3H5B6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5B6_9STRA) HSP 1 Score: 105 bits (263), Expect = 4.810e-27 Identity = 55/103 (53.40%), Postives = 70/103 (67.96%), Query Frame = 1 Query: 61 QYVTFEPDRGGFNNIRMAMETVLVFARETGRTLVMPPAQKFYLLNK-----PAAEFADMFPIEYLSDYMDIISMEDFLKKEGLTGRLG-------QRPPGNKS 333 +YVTFEPD GG+NNIRM ME VLVFA TGRTLV+PP Q YLLNK A FAD FP +Y++ M +I+ME+F+++EG TG L + PP N++ Sbjct: 11 KYVTFEPDVGGWNNIRMQMELVLVFAYATGRTLVLPPDQPMYLLNKGKGHQKAHSFADFFPFDYINQRMSVITMEEFMRREGQTGLLRNTTTGVIEYPPNNQT 113
BLAST of mRNA_L-elsbetiae_contig18744.5485.1 vs. uniprot
Match: W7U3X1_9STRA (Fucosyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3X1_9STRA) HSP 1 Score: 113 bits (283), Expect = 5.080e-27 Identity = 61/113 (53.98%), Postives = 72/113 (63.72%), Query Frame = 1 Query: 13 SPWGARARLAKSEGMPQYVTFEPDRGGFNNIRMAMETVLVFARETGRTLVMPPAQKFYLLNKPA------AEFADMFPIEYLSDYMDIISMEDFLKKEGLTGRLGQRPPGNKS 333 +PW A K YVTFEPDRGG+NNIRMAME VLVFA TGRTLVMPP Q YLLNK + FAD F + L + M++I M+DFL+ E +TG LG PP N + Sbjct: 171 NPWAALGPEKK------YVTFEPDRGGWNNIRMAMEVVLVFAYATGRTLVMPPEQNMYLLNKGSDPGDNTLHFADFFYLHRLQEKMEMIEMKDFLETEAVTGNLGALPPSNST 277
BLAST of mRNA_L-elsbetiae_contig18744.5485.1 vs. uniprot
Match: A0A482S0N0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0N0_9ARCH) HSP 1 Score: 104 bits (259), Expect = 8.070e-24 Identity = 55/103 (53.40%), Postives = 69/103 (66.99%), Query Frame = 1 Query: 61 QYVTFEPDRGGFNNIRMAMETVLVFARETGRTLVMPPAQKFYLL-----NKPAAEFADMFPIEYLSDYMDIISMEDFLKKEGLTGRLGQR-------PPGNKS 333 +YVTFEPD GG+NNIRM ME VLVFA TGRTLV+PP Q YLL ++ A FAD FP E + + M +I+ME+FL++E + G L R PPGNK+ Sbjct: 100 KYVTFEPDVGGWNNIRMQMELVLVFAYATGRTLVLPPDQPMYLLQAGKGHQKAHSFADFFPFEKIQERMSVITMEEFLQREAVAGHLRNRSTHLVQFPPGNKT 202
BLAST of mRNA_L-elsbetiae_contig18744.5485.1 vs. uniprot
Match: A0A7S4VCN9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VCN9_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.460e-23 Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = 1 Query: 61 QYVTFEPDRGGFNNIRMAMETVLVFARETGRTLVMPPAQKFYLLNKPAAEFADMFPIEYLS---DYMDIISMEDFLKKEGLTGRLGQRPPGN 327 +Y+TFEPD GG+NNIRMAMET LV A GRTLV+PP Q+ YLL K F D F ++ ++ D D+++MEDFLKKEG+TG+L GN Sbjct: 141 KYLTFEPDHGGWNNIRMAMETALVMAHAMGRTLVLPPEQRMYLLGKDHFSFNDFFHLDSIALEHDGFDLMTMEDFLKKEGVTGKLTDTKTGN 232
BLAST of mRNA_L-elsbetiae_contig18744.5485.1 vs. uniprot
Match: B5Y3N4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3N4_PHATC) HSP 1 Score: 103 bits (257), Expect = 1.970e-23 Identity = 56/109 (51.38%), Postives = 72/109 (66.06%), Query Frame = 1 Query: 52 GMPQYVTFEPDRGGFNNIRMAMETVLVFARETGRTLVMPPAQKFYLLNKPAA------EFADMFPIEYLS---DYMDIISMEDFLKKEGLTGRL----GQR--PPGNKS 333 G +Y+TFEPD GGFNN+RM+METV+ A TGRTLV+PP Q YLLNK + FAD FP++ LS D +DIIS +FL++EG+ G L GQ PP N++ Sbjct: 118 GTQRYLTFEPDIGGFNNVRMSMETVIAIAHATGRTLVLPPEQNIYLLNKQSGTHKKSFSFADFFPLDTLSSEQDGLDIISTNEFLRREGIAGNLKDGSGQTSYPPNNRT 226
BLAST of mRNA_L-elsbetiae_contig18744.5485.1 vs. uniprot
Match: A0A7S2AA14_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2AA14_TRICV) HSP 1 Score: 94.7 bits (234), Expect = 3.700e-22 Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 7 YQSPWGARARLAKSEGMPQYVTFEPDRGGFNNIRMAMETVLVFARETGRTLVMPPAQKFYLLNKPAAE----FADMFPIEYLSDY---MDIISMEDFLKKEGLTGRLGQRP 318 +QSP+ AKS G +YVTF+PD GG+NNIRMAME + VFA GRT+++PP FYLL E FAD +P+ + D+ + +ISMEDF K EG G + Q P Sbjct: 44 FQSPFAE----AKSSGETKYVTFQPDTGGWNNIRMAMENIFVFAAAMGRTIILPPPLPFYLLKDDVVEKHRGFADFYPL-WTKDFQRRVPVISMEDFFKAEGGPGGILQVP 149
BLAST of mRNA_L-elsbetiae_contig18744.5485.1 vs. uniprot
Match: A0A7S3PYB4_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYB4_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 4.880e-22 Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = 1 Query: 7 YQSPWGARARLAKSEGMPQYVTFEPDRGGFNNIRMAMETVLVFARETGRTLVMPPAQKFYLLNKPAAE------FADMFPIEYLS---DYMDIISMEDFLKKEGLTGRLGQRPPGNKS 333 Y SP+ + AK QY+TFEPD GG+NNIRMAMETV+V A GRTLV+PPAQ YLL K + FAD F +E +S D +DII+ E+FL +E +TG++ ++ G S Sbjct: 251 YVSPF-KKHNDAKKGSATQYMTFEPDGGGWNNIRMAMETVVVMAHAMGRTLVLPPAQGMYLLRKERGKQNIHFSFADFFHLESISREHDGLDIITTEEFLLREAMTGKMRKKKSGEVS 367
BLAST of mRNA_L-elsbetiae_contig18744.5485.1 vs. uniprot
Match: A0A7S4N1R2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1R2_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 2.270e-21 Identity = 50/93 (53.76%), Postives = 67/93 (72.04%), Query Frame = 1 Query: 49 EGMPQYVTFEPDRGGFNNIRMAMETVLVFARETGRTLVMPPAQKFYLLNKPAAE----FADMFPIEYLS---DYMDIISMEDFLKKEGLTGRL 306 E +Y+TFEPDRGG+NNIRMAMETVLV A TGRTLV+PP +K YLLNK + F D F ++ ++ + +++I+ME+FLK+E GRL Sbjct: 184 ESRAKYLTFEPDRGGWNNIRMAMETVLVLAHATGRTLVLPPEKKMYLLNKDKGKNDFNFNDFFHLDSIAVEHEGLNVITMEEFLKREAEAGRL 276
BLAST of mRNA_L-elsbetiae_contig18744.5485.1 vs. uniprot
Match: A0A7S2LNI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LNI6_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 4.100e-20 Identity = 54/124 (43.55%), Postives = 74/124 (59.68%), Query Frame = 1 Query: 7 YQSPWGARARLAKSEGMPQYVTFEPDRGGFNNIRMAMETVLVFARETGRTLVMPPAQKFYLLNKPAAE----FADMFPIE---YLSDYMDIISMEDFLKKEGLTGRLGQR-------PPGNKSS 336 + SP GA ++ K Y+TFEPD GGFNNIRM+MET++V A RTLVMPP+Q YLL K + + F D + +E Y + +ISME+FLK E +TG L + PP N+++ Sbjct: 153 FVSPIGANSKKRK------YLTFEPDGGGFNNIRMSMETMIVMAHAMSRTLVMPPSQGMYLLRKGSGKKHFSFDDFYHLEQVGYEHAGLHVISMEEFLKTEAMTGNLFNKATGDVAFPPNNRTN 270 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18744.5485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig18744.5485.1 >prot_L-elsbetiae_contig18744.5485.1 ID=prot_L-elsbetiae_contig18744.5485.1|Name=mRNA_L-elsbetiae_contig18744.5485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp MYQSPWGARARLAKSEGMPQYVTFEPDRGGFNNIRMAMETVLVFARETGRback to top mRNA from alignment at L-elsbetiae_contig18744:235..2430- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig18744.5485.1 ID=mRNA_L-elsbetiae_contig18744.5485.1|Name=mRNA_L-elsbetiae_contig18744.5485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2196bp|location=Sequence derived from alignment at L-elsbetiae_contig18744:235..2430- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig18744:235..2430- >mRNA_L-elsbetiae_contig18744.5485.1 ID=mRNA_L-elsbetiae_contig18744.5485.1|Name=mRNA_L-elsbetiae_contig18744.5485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig18744:235..2430- (Laminarionema elsbetiae ELsaHSoW15)back to top |