mRNA_L-elsbetiae_contig1862.5443.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1862.5443.1 vs. uniprot
Match: A0A835YNI0_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNI0_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 2.510e-16 Identity = 59/169 (34.91%), Postives = 80/169 (47.34%), Query Frame = 3 Query: 276 AASTFEAAKKGDVDFIQTAVLNGMDVNERDSNGESALMIAAQHGREEAVKWLALAGARTEDTDGTLGTTALMFACIGGHHLAARELLRAGADADVRFDSEDNRVTPLMFSVQYCGVARLRKKEPWAKFGATIQELLRGGASVDLTDKRGRTALTFAAELGHPEVTSWLI 782 A +AAK GDV ++ L G D+N ++ +G+ AL++AAQ G EAV+WL +AGA+ + D +G T ++FACI G A ++ G LL GGA V DK GRTAL FAAELGHPE+ W + Sbjct: 6 AKQVCDAAKAGDVAKLRELQLAGADINAQNEDGDVALLLAAQGGFHEAVRWLCMAGAKKDVMDKHVGATPMLFACIEG----ASMVVNGGV-------------------------------------------LLDGGADVSARDKSGRTALMFAAELGHPELVQWCL 127
BLAST of mRNA_L-elsbetiae_contig1862.5443.1 vs. uniprot
Match: A0A6H5KV01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV01_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 7.980e-11 Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 3 Query: 1170 ARQVIIRFLQNNGAAFKLIDADMIKESHEAAAALGVQTDAEGKFS 1304 A +VIIRFLQNNGA FKLID+D+I ESH AAALGV+TDA+GKFS Sbjct: 47 ADKVIIRFLQNNGATFKLIDSDVIAESHATAAALGVKTDADGKFS 91
BLAST of mRNA_L-elsbetiae_contig1862.5443.1 vs. uniprot
Match: A0A6H5L238_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L238_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 3.560e-6 Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 3 Query: 282 STFEAAKKGDVDFIQTAVLNGMDVNERDSNGE 377 STFEAAK GD DFIQ A+L+G+DVN+RDSNGE Sbjct: 25 STFEAAKNGDADFIQAAILDGVDVNKRDSNGE 56
BLAST of mRNA_L-elsbetiae_contig1862.5443.1 vs. uniprot
Match: A0A6M0C8G5_9CYAN (Uncharacterized protein (Fragment) n=1 Tax=Okeania sp. SIO2H7 TaxID=2607802 RepID=A0A6M0C8G5_9CYAN) HSP 1 Score: 58.9 bits (141), Expect = 9.660e-6 Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 3 Query: 342 GMDVNER-DSNGESALMIAAQHGREEAVKWLALAGARTEDTDGTLGTTALMFACIGGHHLAARELLRAGADADVRFDSEDNRVTPLMFSVQYCGVARLRKKEPWAKFGATIQELLRGGASVDLTDKRGRTALTFAA 746 G+ ER DS +A M A G E ++ + LA D T G TAL A I G AR ++ AGAD V +E + TPL+++ + A+ ++ AK+ +IQ L+ GA+V+L+D+ G LT AA Sbjct: 146 GLTYRERKDSQLLNAFMDAVGSGNIELLQNI-LADGMNVDAFNTDGNTALCIAAIAGDASVARLIIEAGAD--VNLGNETDGQTPLIYAAGFVAQAQHFSEDNEAKYIKSIQILINAGANVNLSDRDGYRPLTIAA 278
BLAST of mRNA_L-elsbetiae_contig1862.5443.1 vs. uniprot
Match: A0A0Q3SVX2_BRECH (Uncharacterized protein n=2 Tax=Brevibacillus choshinensis TaxID=54911 RepID=A0A0Q3SVX2_BRECH) HSP 1 Score: 56.6 bits (135), Expect = 1.410e-5 Identity = 52/190 (27.37%), Postives = 89/190 (46.84%), Query Frame = 3 Query: 282 STFEAAKKGDVDFIQTAVLNGMDVNERDSNGESALMIAAQHGREEAVKWLALAGARTEDTDGTLGTTALMFACIGGHHLAARELLRAGADADV--RFD-------SEDNRV-------TPLMFSVQY---CG----VARLRKKEPWAKFGATIQELLRGGASVDLTDKRGRTALTFAAELGHPEVTSWLI 782 S EAA +GDV +Q+ V G+D+N R+ +A+++AA + +AV +L AGA + D T +F C+ G + +++A + ++ RF SE V T +V + CG + + + + I+ L+ GA+V + DK G T LT A + G+ E+ L+ Sbjct: 9 SFLEAASQGDVAALQSYVAQGVDLNARNKQKRTAILLAAMNDHYDAVAYLIEAGADIDLQDETCFNP-FLFGCVNGKLELVKMMVKANTNVELVTRFGGVGITPASEKGHVEIVHELLTTTDINVNHTNTCGWTPLIEAIILNDGGERQQTIIKMLIEHGANVHMVDKYGVTPLTLARQKGYTEIEQILL 197
BLAST of mRNA_L-elsbetiae_contig1862.5443.1 vs. uniprot
Match: A0A8K1CNB4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNB4_PYTOL) HSP 1 Score: 58.2 bits (139), Expect = 3.550e-5 Identity = 48/156 (30.77%), Postives = 79/156 (50.64%), Query Frame = 3 Query: 288 FEAAKKGDVDFIQTAVLNGM--DVNERDSNGESALMIAAQHGREEAVKWLALAGARTEDTDGTLGTTALMFACIGGHHLAARELLRAGADADVRFDSEDNRVTPLMFSVQYCGVARLRKKEPWAKFGATIQELLRGGASVDLTDKRGRTALTFAAE 749 F AAK G++ F+ + V +G+ D+N R+ +G +A+M+AA+ G E+ V +L GA TE G TAL A G+ + L+ AGA D + +VTPL+ + + + ++ LL GA +D + +TAL +A + Sbjct: 9 FVAAKSGNIKFVVSLVRSGLISDLNCRNFDGWTAMMVAARQGHEDIVAFLLACGADTEAHKE--GPTALYLAATRGYVSIIKRLVDAGATVDTTVT--EKQVTPLLAATMF-------------RHADVVELLLDRGAVLDRQNSDLQTALHWAVD 147 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1862.5443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1862.5443.1 >prot_L-elsbetiae_contig1862.5443.1 ID=prot_L-elsbetiae_contig1862.5443.1|Name=mRNA_L-elsbetiae_contig1862.5443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=408bp MSSSKDTTSTPAAVAAAAAAAGSSSSHAASTFEAAKKGDVDFIQTAVLNGback to top mRNA from alignment at L-elsbetiae_contig1862:10399..21563+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1862.5443.1 ID=mRNA_L-elsbetiae_contig1862.5443.1|Name=mRNA_L-elsbetiae_contig1862.5443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11165bp|location=Sequence derived from alignment at L-elsbetiae_contig1862:10399..21563+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1862:10399..21563+ >mRNA_L-elsbetiae_contig1862.5443.1 ID=mRNA_L-elsbetiae_contig1862.5443.1|Name=mRNA_L-elsbetiae_contig1862.5443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2448bp|location=Sequence derived from alignment at L-elsbetiae_contig1862:10399..21563+ (Laminarionema elsbetiae ELsaHSoW15)back to top |