mRNA_L-elsbetiae_contig1856.5406.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1856.5406.1
Unique NamemRNA_L-elsbetiae_contig1856.5406.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1856.5406.1 vs. uniprot
Match: B5LWA8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWA8_9PHYC)

HSP 1 Score: 257 bits (657), Expect = 1.660e-81
Identity = 133/297 (44.78%), Postives = 186/297 (62.63%), Query Frame = 1 
Query:   22 GSTISGPWRLTVWEKKNSPTC-YVFSEEHDNEGSCPEQ--KDIAVLAKDILRNTRHVHVFIEHFSHALGIKRVVYSEEQACSAKS-ESILNNMRNCLEVLRINRPEEKNRIHFVDPRMDIVGVLPDGKLYEAITHYTKFLMRSGNLSEALMTVYEAFIHPLLSIVPNKFGVHGRMTGVMERYESQMTEVQQSLFLRLWKVDIVERIKTLSETYVLMEKTQSLSRLTNLKLSYTDMVNKFMDMCLLAQFFVAQNKGMSAAVIYAGSLHSLNFETYLGNYGYTRTRMFENKSLTACIVL 900
            G+++SGPWRL+VW  ++  T  YVF+EEH N G C     +D+  L  DI++ T  VHVF+EHF H     R       AC A + +  L ++RNCL+  R   P   +RIHF+DPRMD+V +LPDG +Y+A++HY   L   G+   A  TVYEAF+HPLLS+VP++ G+ GRM  VMER  S +T  Q+  F   W+  +V  +  + + Y    K + L  L     +YTDMVN F D+ LLA+FFVAQN GM+A ++YAGS HSLNFE +L   GY + ++ +N+ L+AC+ L
Sbjct:   13 GTSVSGPWRLSVWRHRDEGTVVYVFAEEHGNAGPCHRTTGQDLTPLVFDIIQKTSRVHVFLEHFIHT----RESMGVSDACFASARQDTLKHLRNCLQFARNKTPGYADRIHFIDPRMDLVAILPDGNVYKAVSHYITHLDEVGDFPAARRTVYEAFVHPLLSLVPDRVGLEGRMERVMERTISLLTPRQRKFFTLSWETGVVGNVARVVQIYKQFAKPKHLKSLLQ---AYTDMVNHFTDLWLLAEFFVAQNYGMTAGIVYAGSRHSLNFENFLEELGYEKIKVVQNRDLSACLAL 302
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BLAST of mRNA_L-elsbetiae_contig1856.5406.1 vs. uniprot
Match: Q8QNJ6_ESV1K (EsV-1-77 n=2 Tax=root TaxID=1 RepID=Q8QNJ6_ESV1K)

HSP 1 Score: 244 bits (623), Expect = 5.830e-76
Identity = 132/316 (41.77%), Postives = 189/316 (59.81%), Query Frame = 1 
Query:   19 SGSTISGPWRLTVWEKKNSPTCYVFSEEHDNEGSCPEQKDIAVLAKDILRNTRHVHVFIEHFSHALGIKR----VVYSEEQACSAKSESILNNMRNCLEVLRINRPEEKN----RIHFVDPRMDIVGVLPDGKLYEAITHYTKFLMRSGNLSEALMTVYEAFIHPLLSIVPNKFGVHGRMTGVMERYESQMTEVQQSLFLRLWKVDIVERIKTLSETYVLMEKTQSLSR-------------LTNLKLSYTDMVNKFMDMCLLAQFFVAQNK-GMSAAVIYAGSLHSLNFETYLGNYGYTRTRMFENKSLTACIVL 900
            SGS +SGPWRLTVW+   +   YVFSEEH N+GSCP+ +  + LA +IL+ T  VHV +E+F HA  I      +  S  QACSA +  ILNN+R+CLEV++IN          RIHF+DPR+D+V VLPDGKL+EAI+ Y       G+  +A++TV+E+ +HPL S++P++  + GR+ GV E + ++MT VQ+  F R+W  DI   I  ++  YV + +    SR             +  +K  Y    NKFMD+ LLA  F+ QN  G +  V+Y GSLH L  E YL  +G  +    EN+ L +C+++
Sbjct:   15 SGSPVSGPWRLTVWDAATTGKLYVFSEEHANKGSCPQNRHFSSLASEILQKTSGVHVLVENFIHAYDITTPKTGIKTSVAQACSAVNVGILNNLRSCLEVMKINSQHCPGGCAKRIHFIDPRVDMVSVLPDGKLFEAISFYAHHKASHGSFDDAVLTVFESLVHPLSSLLPDRANLAGRLVGVFETFRNKMTPVQRVTFDRIWVRDITGGIADINAKYVKLHENYCASRRKRAPSLANFSQDVEEIKQLYKRYTNKFMDVWLLAHIFMIQNTAGSNGMVMYLGSLHGLEIEKYLSLHGLRKIHHSENQHLDSCLLM 330
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BLAST of mRNA_L-elsbetiae_contig1856.5406.1 vs. uniprot
Match: Q6XM25_9PHYC (FirrV-1-B11 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM25_9PHYC)

HSP 1 Score: 233 bits (594), Expect = 4.270e-72
Identity = 125/296 (42.23%), Postives = 177/296 (59.80%), Query Frame = 1 
Query:   31 ISGPWRLTVWEKKNSPTCYVFSEEHDNEGSCP---EQKDIAVLAKDILRNTRHVHVFIEHFSHALGIKRVVYSEEQACSAKSESILNNMRNCLEVLRINRPEEKNRIHFVDPRMDIVGVLPDGKLYEAITHYTKFLMRSGNLSEALMTVYEAFIHPLLSIVP---NKFGVHGRMTGVMERYESQMTEVQQSLFLRLWKVDIVERIKTLSETYVLMEKTQSLSRLTNLKLSYTDMVNKFMDMCLLAQFFVAQNKGMSAAVIYAGSLHSLNFETYLGNYGYTRTRMFENKSLTACIVL 900
            +SGPWR T+W  ++    +VFSEEH+N+G+C    +Q D+  L  +I+R+T++VHVF+EHF HA  ++R        C+  S S L N+R CL         +  RIH++DPR D+V +LP+G++ EAI HY   L       E  + +YE FIHPLLSIV    +   + GR+  V+++Y + MT  Q   F   W VD++  I+ +   Y   E T  LS L  L  +YTD VN+FMD+ LLA FFVA+N GM+ ++IYAGS HSL+FE YL    Y     F N+ L+AC+ L
Sbjct:   16 VSGPWRATMWRTRDGHVTWVFSEEHENKGACGLEVQQTDLTSLVAEIIRDTKNVHVFLEHFVHAADVQRT-------CTT-SNSTLQNLRGCL--------PKGPRIHYIDPRTDLVAILPNGQILEAIVHYAHHLHSQHKDLELKLLLYETFIHPLLSIVSPSGDSAVLEGRLNTVLQKYVANMTTAQMGFFRDKWSVDVIANIENVRRIY--HECTTRLSNLPALLEAYTDTVNRFMDLWLLANFFVAENSGMTGSIIYAGSKHSLHFEKYLAEMRYELLEQFTNRDLSACLAL 293
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BLAST of mRNA_L-elsbetiae_contig1856.5406.1 vs. uniprot
Match: Q6XLU4_9PHYC (FirrV-1-I2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU4_9PHYC)

HSP 1 Score: 228 bits (580), Expect = 8.420e-70
Identity = 121/299 (40.47%), Postives = 174/299 (58.19%), Query Frame = 1 
Query:   22 GSTISGPWRLTVWEKKN-SPTCYVFSEEHDNEGSCP---EQKDIAVLAKDILRNTRHVHVFIEHFSHALGIKRVVYSEEQACSAKSESILNNMRNCLEV--LRINRPEEKNRIHFVDPRMDIVGVLPDGKLYEAITHYTKFLMRSGNLSEALMTVYEAFIHPLLSIVPNKFGVHGRMTGVMERYESQMTEVQQSLFLRLWKVDIVERIKTLSETYVLMEKTQSLSRLTNLKLSYTDMVNKFMDMCLLAQFFVAQNKGMSAAVIYAGSLHSLNFETYLGNYGYTRTRMFENKSLTACIVL 900
            G+ ISGPWR++VW+KK+ +   +VFSEEH+N G+C    +  D+  L   I++NT  VHVF+EHF HA+ + R        CS+   S L  +RNCL +   +  + + +NRIHF+DPR D+V +LPDG +Y+A+ HY K L R     E  + +YE F+HPLLSIV     + GR+  +M++Y   MT  Q       W  D++  +  +   Y   E +     +  L  +YTDMVNKF D+ LLA FF A N  M+ A++YAGS HSL+FE YL    Y       N+ L+AC+ +
Sbjct:   13 GTRISGPWRVSVWKKKDCNQNIWVFSEEHENRGACGLEVKHTDLTNLVSHIVKNTEGVHVFLEHFVHAVDVTRT-------CSSDESSTLTRLRNCLGIDQQQQQQRDSENRIHFIDPRTDLVAILPDGTVYQAVLHYAKHLRRQHKQPELKLLLYETFVHPLLSIVNPDGTLQGRLNVIMQKYMENMTPSQHRFLCSKWHNDVILNVLYVYRVYD--ELSSDSIGIVPLLEAYTDMVNKFTDLWLLANFFKADNDSMTGAIVYAGSKHSLHFEKYLAEMQYDLLDHNSNQDLSACLTI 302
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1856.5406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
B5LWA8_9PHYC1.660e-8144.78Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q8QNJ6_ESV1K5.830e-7641.77EsV-1-77 n=2 Tax=root TaxID=1 RepID=Q8QNJ6_ESV1K[more]
Q6XM25_9PHYC4.270e-7242.23FirrV-1-B11 n=1 Tax=Feldmannia irregularis virus a... [more]
Q6XLU4_9PHYC8.420e-7040.47FirrV-1-I2 n=1 Tax=Feldmannia irregularis virus a ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1856contigL-elsbetiae_contig1856:9396..10298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-77
Ec32 orthologEc-06_006030.1
Exons1
Model size903
Cds size903
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.9612396-CDS-L-elsbetiae_contig1856:9395..102981622815772.9612396-CDS-L-elsbetiae_contig1856:9395..10298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 9396..10298 -
1691683092.706849-CDS-L-elsbetiae_contig1856:9395..102981691683092.706849-CDS-L-elsbetiae_contig1856:9395..10298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 9396..10298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1856.5406.1prot_L-elsbetiae_contig1856.5406.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1856 9396..10298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1856.5406.1

>prot_L-elsbetiae_contig1856.5406.1 ID=prot_L-elsbetiae_contig1856.5406.1|Name=mRNA_L-elsbetiae_contig1856.5406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=301bp
MSQALESGSTISGPWRLTVWEKKNSPTCYVFSEEHDNEGSCPEQKDIAVL
AKDILRNTRHVHVFIEHFSHALGIKRVVYSEEQACSAKSESILNNMRNCL
EVLRINRPEEKNRIHFVDPRMDIVGVLPDGKLYEAITHYTKFLMRSGNLS
EALMTVYEAFIHPLLSIVPNKFGVHGRMTGVMERYESQMTEVQQSLFLRL
WKVDIVERIKTLSETYVLMEKTQSLSRLTNLKLSYTDMVNKFMDMCLLAQ
FFVAQNKGMSAAVIYAGSLHSLNFETYLGNYGYTRTRMFENKSLTACIVL
*
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mRNA from alignment at L-elsbetiae_contig1856:9396..10298-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1856.5406.1 ID=mRNA_L-elsbetiae_contig1856.5406.1|Name=mRNA_L-elsbetiae_contig1856.5406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=903bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:9396..10298- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCAGGCCCTAGAATCCGGATCCACCATTTCAGGCCCTTGGAGGCT
TACTGTCTGGGAAAAGAAAAACTCCCCAACTTGTTATGTTTTTTCCGAGG
AGCACGACAACGAGGGATCCTGTCCCGAACAGAAAGATATCGCAGTGTTA
GCCAAAGACATTCTGCGAAATACTCGACATGTACATGTGTTTATAGAACA
CTTTTCACACGCCCTAGGAATAAAGAGAGTGGTGTATTCAGAGGAGCAAG
CGTGTTCCGCGAAATCAGAATCAATTCTCAATAACATGAGAAACTGTTTG
GAGGTCCTGAGAATTAATCGTCCAGAGGAAAAGAACCGAATTCATTTCGT
TGACCCCCGGATGGACATAGTGGGAGTCTTACCCGACGGGAAATTATATG
AGGCAATCACGCACTATACTAAATTCCTTATGAGGTCCGGTAACTTGAGT
GAGGCGCTAATGACAGTCTACGAAGCATTTATTCACCCACTTCTAAGTAT
AGTCCCAAATAAATTTGGAGTGCACGGCAGAATGACGGGCGTAATGGAGA
GATACGAGTCCCAAATGACTGAGGTGCAACAAAGCCTATTCCTCAGGTTG
TGGAAAGTAGATATTGTCGAGAGGATAAAAACCCTTTCAGAAACATATGT
ACTAATGGAGAAGACTCAGAGCCTCTCGCGACTGACTAACCTCAAGTTAT
CCTACACCGACATGGTGAATAAATTCATGGACATGTGTCTGCTAGCACAG
TTTTTTGTCGCTCAAAACAAAGGCATGTCAGCGGCCGTAATCTACGCCGG
TAGTCTACACTCGTTAAATTTTGAGACGTACTTGGGGAACTATGGTTACA
CGAGAACGAGAATGTTTGAAAACAAGAGCCTAACCGCGTGTATAGTACTT
TAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1856:9396..10298-

>mRNA_L-elsbetiae_contig1856.5406.1 ID=mRNA_L-elsbetiae_contig1856.5406.1|Name=mRNA_L-elsbetiae_contig1856.5406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1806bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:9396..10298- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCAGGCCCTAGAATCCGGATCCACCATTTCAGGCCCTTGGAGGCT
TACTGTCTGGGAAAAGAAAAACTCCCCAACTTGTTATGTTTTTTCCGAGG
AGCACGACAACGAGGGATCCTGTCCCGAACAGAAAGATATCGCAGTGTTA
GCCAAAGACATTCTGCGAAATACTCGACATGTACATGTGTTTATAGAACA
CTTTTCACACGCCCTAGGAATAAAGAGAGTGGTGTATTCAGAGGAGCAAG
CGTGTTCCGCGAAATCAGAATCAATTCTCAATAACATGAGAAACTGTTTG
GAGGTCCTGAGAATTAATCGTCCAGAGGAAAAGAACCGAATTCATTTCGT
TGACCCCCGGATGGACATAGTGGGAGTCTTACCCGACGGGAAATTATATG
AGGCAATCACGCACTATACTAAATTCCTTATGAGGTCCGGTAACTTGAGT
GAGGCGCTAATGACAGTCTACGAAGCATTTATTCACCCACTTCTAAGTAT
AGTCCCAAATAAATTTGGAGTGCACGGCAGAATGACGGGCGTAATGGAGA
GATACGAGTCCCAAATGACTGAGGTGCAACAAAGCCTATTCCTCAGGTTG
TGGAAAGTAGATATTGTCGAGAGGATAAAAACCCTTTCAGAAACATATGT
ACTAATGGAGAAGACTCAGAGCCTCTCGCGACTGACTAACCTCAAGTTAT
CCTACACCGACATGGTGAATAAATTCATGGACATGTGTCTGCTAGCACAG
TTTTTTGTCGCTCAAAACAAAGGCATGTCAGCGGCCGTAATCTACGCCGG
TAGTCTACACTCGTTAAATTTTGAGACGTACTTGGGGAACTATGGTTACA
CGAGAACGAGAATGTTTGAAAACAAGAGCCTAACCGCGTGTATAGTACTT
TAAATGTCGCAGGCCCTAGAATCCGGATCCACCATTTCAGGCCCTTGGAG
GCTTACTGTCTGGGAAAAGAAAAACTCCCCAACTTGTTATGTTTTTTCCG
AGGAGCACGACAACGAGGGATCCTGTCCCGAACAGAAAGATATCGCAGTG
TTAGCCAAAGACATTCTGCGAAATACTCGACATGTACATGTGTTTATAGA
ACACTTTTCACACGCCCTAGGAATAAAGAGAGTGGTGTATTCAGAGGAGC
AAGCGTGTTCCGCGAAATCAGAATCAATTCTCAATAACATGAGAAACTGT
TTGGAGGTCCTGAGAATTAATCGTCCAGAGGAAAAGAACCGAATTCATTT
CGTTGACCCCCGGATGGACATAGTGGGAGTCTTACCCGACGGGAAATTAT
ATGAGGCAATCACGCACTATACTAAATTCCTTATGAGGTCCGGTAACTTG
AGTGAGGCGCTAATGACAGTCTACGAAGCATTTATTCACCCACTTCTAAG
TATAGTCCCAAATAAATTTGGAGTGCACGGCAGAATGACGGGCGTAATGG
AGAGATACGAGTCCCAAATGACTGAGGTGCAACAAAGCCTATTCCTCAGG
TTGTGGAAAGTAGATATTGTCGAGAGGATAAAAACCCTTTCAGAAACATA
TGTACTAATGGAGAAGACTCAGAGCCTCTCGCGACTGACTAACCTCAAGT
TATCCTACACCGACATGGTGAATAAATTCATGGACATGTGTCTGCTAGCA
CAGTTTTTTGTCGCTCAAAACAAAGGCATGTCAGCGGCCGTAATCTACGC
CGGTAGTCTACACTCGTTAAATTTTGAGACGTACTTGGGGAACTATGGTT
ACACGAGAACGAGAATGTTTGAAAACAAGAGCCTAACCGCGTGTATAGTA
CTTTAA
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