mRNA_L-elsbetiae_contig1839.5334.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1839.5334.1 vs. uniprot
Match: A0A6H5JD13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD13_9PHAE) HSP 1 Score: 459 bits (1180), Expect = 2.590e-142 Identity = 406/885 (45.88%), Postives = 485/885 (54.80%), Query Frame = 2 Query: 2 RRHDWANSTPHISKEYQGKTLDSLHLQTLHLEAAEGGDNAGADSSVLRKSMLAGNTDVEVERPL--TWS---IRSPARKRQGSPSEPERTLTHVIRLHRTGSVVVERKASPRASSAGAVTTGAPGTGRPEGDHGGFYAEEQRFWRERCPYPAEATASDRREKEASADAAPRKTPLLASSSPGTQRAAGRAANYDYISAEAAYRSSPGHRAADDPYSNGKNDGFVRGGRIGRTPSRQKRANSDTEGGDGLGDADDPTPPKPRLPRRQVVGDGGDVHAAESKTRPNAERRXXXXXXXXXSLRDAEAVLHRVLESVEGGLTTAEVLF-----QNPLSPRRAPPGDRVPALRQGDVAL---PTSSNRGAQNPRAQGCA---PSPMVNSNQVHRHHRCTGSDDVSNHAPSPSSASRSPRRVPPSQLRSFESVRTKGTAMRGLSQQ-DCYEERESGEXXXXXXXXXXXXXXX-------------VXXXXXXXXXRCLHMEXXXSRRERSQTRLFQEQLRGVRQAAQQAARRTIRDDRCRASQLLAAAQKRFEEREAAAVARSEQAEESWKTEREKLTANLATAKSELERARRLAREAAEAGKKDAEGALEKQRVEMQRGWAEEKGGLRRAGEDALRRAVDAKARAEEEASLKAQTTRDSLNAQVRSWKAKSEAAEKRAAEERDKRRRLEAGAKGALAQEVEKARQAQESIIRELXXXXXXXXXXXXXXVERIKEEHRANLLRVHQDKKRLSEAARRQWDQEMREVRADAAAKIEDVTARSAAERAEALRRLKLAHDVEMRKAGRDVLRLEREVRRCQQQ-EPSGEVARSKAGASSLSPLPRGTYSPKPLHAEAGAATSCLDGVEAEGGFQSLASPALSSSNAAAAYPGDG 2563 R+ D S S E+ LD L L +++ E GD SS LR + LAG+ D + P+ WS SP K +G E LTHVIRLHRTGSVVVERK P A GA G R YAEE+RFW+ RCP A+ +R ++SP +A GRAANYDY +AEAA+ + + P N G G GR + + +D + PP R R+ G A + R A+RR SLRDAE+VL VLESVE +T EV ++ S P G+R LRQ L RG + G + SP Q RH+ D N PSP R R R +G RG SQQ D +E+R+ E XXX V RC XXX SQTRLFQEQLR VR AQQ ARRTI D+R R QLL Q+RFEE+E VA+ AEESWK ERE L AN A AKSE+E+ RR AR AAEAG + ALEKQR+++QRGWAEEKGGLRRA EDALRRA++ ARA EEA+ KAQ +DSL+AQVRSWKAK+E AE+RAAEER+KR+ LEAG KGALAQE XXXXXXXXXXXXXX ER++EEHRA LLRVHQDKK L EAARR+W++EM+E+R +A AK ED R+ AER+EALRRL+LAHD EMRKAGRD+LRLERE RRCQQQ EPSG RSK S+LSPLPRG+YS +PL +E A SCLDGVEAE G Q+ S L++ + A PG G Sbjct: 65 RQSDRDRSAASPSPEHHPGMLDDLDLGAVNVGPDEAGDCTDNVSSTLRTTKLAGDPDG-MHPPIGQAWSETRSTSPEPKPKGHDLETGDNLTHVIRLHRTGSVVVERKGKPNARGGIIGDAGAFGP-RQHAAEQYSYAEEERFWQARCPPEADNAVVVQR--------------TAPTASPRVTKANGRAANYDYFAAEAAHLAGSPAGKSVPPGGNSSLRGRGPGQPTGRRTTTRFEEKADACVQENCATQGTHVPPPRRTARK---GCSARAKAITERKRDKAQRRRLQ------SLRDAESVLRGVLESVEDAPSTGEVCRKTAAEEDSYSTMDTPQGERFSVLRQNVANLFRDEAHEERGESSTGKHGGSMGGTSPSKYRAQTSRHY------DGDNW-PSPLGIRRVGNR---------SGSRERGAMARGTSQQVDQHEQRQCIEDERAEGLAHSEEXXXXXXGXXXQESAGRVAELSRRIAMRCXXXXXXXXXXXXSQTRLFQEQLRSVRLGAQQVARRTIHDERIRQKQLLLETQQRFEEKERGLVAKLNLAEESWKVERESLNANTAAAKSEVEKCRRQARAAAEAGMNASREALEKQRLDLQRGWAEEKGGLRRAAEDALRRAMEGNARAREEAAKKAQAAQDSLDAQVRSWKAKTETAERRAAEEREKRKGLEAGVKGALAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTERLQEEHRAALLRVHQDKKSLFEAARRKWEKEMQELRREAVAKAEDAATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARRCQQQQEPSGMAPRSKQDNSTLSPLPRGSYSLRPLVSETAGARSCLDGVEAEMGSQTSPSSVLTTPSINA-NPGKG 907
BLAST of mRNA_L-elsbetiae_contig1839.5334.1 vs. uniprot
Match: D7FKN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN2_ECTSI) HSP 1 Score: 353 bits (907), Expect = 1.010e-106 Identity = 226/345 (65.51%), Postives = 263/345 (76.23%), Query Frame = 2 Query: 1418 RSQTRLFQEQLRGVRQAAQQAARRTIRDDRCRASQLLAAAQKRFEEREAAAVARSEQAEESWKTEREKLTANLATAKSELERARRLAREAAEAGKKDAEGALEKQRVEMQRGWAEEKGGLRRAGEDALRRAVDAKARAEEEASLKAQTTRDSLNAQVRSWKAKSEAAEKRAAEERDKRRRLEAGAKGALAQEVEKARQAQESIIRELXXXXXXXXXXXXXXVERIKEEHRANLLRVHQDKKRLSEAARRQWDQEMREVRADAAAKIEDVTARSAAERAEALRRLKLAHDVEMRKAGRDVLRLEREVRRCQQQ-EPSGEVARSKAGASSLSPLPRGTYSPKPLHAE 2449 RSQTRLFQEQLRGVR AQQ ARRTI D+R R QLL Q+RFEE+E VA+ E AEESWK ERE L+A+ A AK E+E+ RR AR AAEA + + ALEKQR++ QRGWAEEKGGLRRA EDALRRA++ R EEA+ KAQT +DSL+AQ+RSWKAK+E AE+RA EER+KRR LEAG KG LAQEVEKA XXXXXX +ER++EEHRA LLRVHQDKK L EAARRQW++EM+E+R +A AK ED R+ AER+EALRRL+LAHD EMRKAGRD+LRLERE RR QQQ EPSG RSK S+LSPLPRG+YSP+PL +E Sbjct: 164 RSQTRLFQEQLRGVRLGAQQVARRTIHDERIRQKQLLLETQQRFEEKEKGLVAKLELAEESWKAERESLSADTAAAKCEVEKCRRQARAAAEAARNTTKEALEKQRLDFQRGWAEEKGGLRRAAEDALRRAMEGNVREREEAATKAQTAQDSLDAQLRSWKAKAETAERRATEEREKRRGLEAGVKGVLAQEVEKAXXXXXXXXXXXXXXXXXDRATHAEEIERLQEEHRAGLLRVHQDKKSLFEAARRQWEKEMQELRREAVAKAEDAATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARRSQQQQEPSGMAPRSKEDNSTLSPLPRGSYSPRPLLSE 508 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1839.5334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1839.5334.1 >prot_L-elsbetiae_contig1839.5334.1 ID=prot_L-elsbetiae_contig1839.5334.1|Name=mRNA_L-elsbetiae_contig1839.5334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=806bp MLAGNTDVEVERPLTWSIRSPARKRQGSPSEPERTLTHVIRLHRTGSVVVback to top mRNA from alignment at L-elsbetiae_contig1839:14383..23063- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1839.5334.1 ID=mRNA_L-elsbetiae_contig1839.5334.1|Name=mRNA_L-elsbetiae_contig1839.5334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8681bp|location=Sequence derived from alignment at L-elsbetiae_contig1839:14383..23063- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1839:14383..23063- >mRNA_L-elsbetiae_contig1839.5334.1 ID=mRNA_L-elsbetiae_contig1839.5334.1|Name=mRNA_L-elsbetiae_contig1839.5334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4836bp|location=Sequence derived from alignment at L-elsbetiae_contig1839:14383..23063- (Laminarionema elsbetiae ELsaHSoW15)back to top |