mRNA_L-elsbetiae_contig18378.5327.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18378.5327.1
Unique NamemRNA_L-elsbetiae_contig18378.5327.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18378.5327.1 vs. uniprot
Match: A0A5J4YZL8_PORPP (dCTP pyrophosphatase 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZL8_PORPP)

HSP 1 Score: 71.6 bits (174), Expect = 2.100e-14
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    1 RDWAQFHTPRNLSLALCGEVGELCELFQFKDEGDCLTGLFGWKKEERDRLSQ 156
            R+W QFHTPRNL LAL GEVGEL ELFQ+K +  C  GL GW   ER+ L +
Sbjct:   32 REWEQFHTPRNLLLALVGEVGELAELFQWKGDAGCGPGLPGWSDAEREHLGE 83          
BLAST of mRNA_L-elsbetiae_contig18378.5327.1 vs. uniprot
Match: R1ECV0_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ECV0_EMIHU)

HSP 1 Score: 70.5 bits (171), Expect = 2.330e-14
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    1 RDWAQFHTPRNLSLALCGEVGELCELFQFKDEGDCLTGLFGWKKEERDRLSQ 156
            RDW QFHTPR+L+LAL GEVGELCE FQ++ +  C  GL GW   +R  L +
Sbjct:   16 RDWDQFHTPRSLALALTGEVGELCECFQWRGDAACAPGLPGWTDADRTHLGE 67          
BLAST of mRNA_L-elsbetiae_contig18378.5327.1 vs. uniprot
Match: A0A6T8HIW3_9STRA (dCTP pyrophosphatase 1 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8HIW3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.430e-14
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 RDWAQFHTPRNLSLALCGEVGELCELFQFKDEGD---CLTGLFGWKKEERDRLSQ 156
            R+W +FHTPRN+SLAL GE+GEL ELFQ+K + D   C  GL GW  EERD L Q
Sbjct:   66 REWHRFHTPRNISLALLGEMGELSELFQWKGDTDSCNCDIGLQGWSAEERDTLGQ 120          
BLAST of mRNA_L-elsbetiae_contig18378.5327.1 vs. uniprot
Match: A0A7S1CSF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CSF4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 9.660e-14
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 RDWAQFHTPRNLSLALCGEVGELCELFQFKDEGDCLTGLFGWKKEERDRLSQ 156
            RDW QFHTPRNL LA+ GEVGEL ELFQ++ +G C  GL  W   ER  L +
Sbjct:   35 RDWDQFHTPRNLVLAMTGEVGELAELFQWRHDGGCEPGLPTWTAAERTHLGE 86          
BLAST of mRNA_L-elsbetiae_contig18378.5327.1 vs. uniprot
Match: A0A7S4BR97_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BR97_CHRCT)

HSP 1 Score: 72.4 bits (176), Expect = 2.080e-13
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 RDWAQFHTPRNLSLALCGEVGELCELFQFKDEGDCLTGLFGWKKEERDRLSQ 156
            RDW +FHTPR+L+LAL GEVGELCEL Q++ +     GL GW  +ER+RLS+
Sbjct:  144 RDWERFHTPRSLALALVGEVGELCELLQWRGDDGAQPGLSGWDDKERERLSE 195          
BLAST of mRNA_L-elsbetiae_contig18378.5327.1 vs. uniprot
Match: A0A0D2WSU4_CAPO3 (dCTP pyrophosphatase 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WSU4_CAPO3)

HSP 1 Score: 69.3 bits (168), Expect = 2.180e-13
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    1 RDWAQFHTPRNLSLALCGEVGELCELFQFKDEGDCLTGLFGWKKEERDRLSQVKGVCML 177
            RDW QFH PRNL LAL GEVGEL E+F ++  G+C  GL GW +++R  L Q    C++
Sbjct:   55 RDWDQFHQPRNLMLALTGEVGELAEIFMWR--GECPVGLPGWSEKDRHHLGQELSDCLI 111          
BLAST of mRNA_L-elsbetiae_contig18378.5327.1 vs. uniprot
Match: A0A803LTG7_CHEQI (dCTP pyrophosphatase 1 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LTG7_CHEQI)

HSP 1 Score: 67.8 bits (164), Expect = 2.560e-13
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 RDWAQFHTPRNLSLALCGEVGELCELFQFKDEGDCLTGLFGWKKEERDRLSQ 156
            RDW QFH+PRNL LAL GEVGEL E+FQ+K  G+   GL GWK+EE+  L +
Sbjct:   26 RDWDQFHSPRNLLLALVGEVGELSEIFQWK--GEVPRGLPGWKEEEKQHLGE 75          
BLAST of mRNA_L-elsbetiae_contig18378.5327.1 vs. uniprot
Match: A0A7S3RKS5_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RKS5_9SPIT)

HSP 1 Score: 69.7 bits (169), Expect = 2.750e-13
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    1 RDWAQFHTPRNLSLALCGEVGELCELFQFKDEGDCLTGLFGWKKEERDRLSQVKGVCML 177
            RDW QFHTPRNL+LAL GEVGEL E FQ+K +  C  GL  W + ER  L +     ML
Sbjct:   81 RDWDQFHTPRNLTLALTGEVGELSECFQWKSDASCAPGLPEWSEAERLHLGEEIADVML 139          
BLAST of mRNA_L-elsbetiae_contig18378.5327.1 vs. uniprot
Match: A0A5C7IUS3_9ROSI (dCTP pyrophosphatase 1 n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7IUS3_9ROSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.940e-13
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 RDWAQFHTPRNLSLALCGEVGELCELFQFKDEGDCLTGLFGWKKEERDRLSQ 156
            RDW QFHTPRNL LAL GEVGEL E+FQ+K  G+   GL GWK+EE+  + +
Sbjct:   27 RDWDQFHTPRNLLLALVGEVGELSEIFQWK--GEVPRGLPGWKEEEKQHVGE 76          
BLAST of mRNA_L-elsbetiae_contig18378.5327.1 vs. uniprot
Match: C1N020_MICPC (Xtp3a-related NTP pyrophosphatase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N020_MICPC)

HSP 1 Score: 72.0 bits (175), Expect = 2.940e-13
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 RDWAQFHTPRNLSLALCGEVGELCELFQFKDEGDCLTGLFGWKKEERDRL 150
            RDW QFH+PRN+ LA+ GEVGE+ ELFQ++ + DC TGL  W +E+R RL
Sbjct:  181 RDWDQFHSPRNVLLAMVGEVGEVSELFQWRGDDDCATGLPSWSREDRARL 230          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18378.5327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4YZL8_PORPP2.100e-1461.54dCTP pyrophosphatase 1 n=1 Tax=Porphyridium purpur... [more]
R1ECV0_EMIHU2.330e-1457.69Uncharacterized protein (Fragment) n=1 Tax=Emilian... [more]
A0A6T8HIW3_9STRA5.430e-1461.82dCTP pyrophosphatase 1 n=1 Tax=Proboscia inermis T... [more]
A0A7S1CSF4_9STRA9.660e-1459.62Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S4BR97_CHRCT2.080e-1359.62Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A0D2WSU4_CAPO32.180e-1352.54dCTP pyrophosphatase 1 n=1 Tax=Capsaspora owczarza... [more]
A0A803LTG7_CHEQI2.560e-1361.54dCTP pyrophosphatase 1 n=1 Tax=Chenopodium quinoa ... [more]
A0A7S3RKS5_9SPIT2.750e-1355.93Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A5C7IUS3_9ROSI2.940e-1361.54dCTP pyrophosphatase 1 n=1 Tax=Acer yangbiense Tax... [more]
C1N020_MICPC2.940e-1360.00Xtp3a-related NTP pyrophosphatase n=1 Tax=Micromon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18378contigL-elsbetiae_contig18378:1782..1964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.8
Seed ortholog evalue6.3e-11
Seed eggNOG ortholog38833.XP_003061319.1
Preferred nameXTP3A
KEGG rclassRC00002
KEGG koko:K16904
KEGG ReactionR01667,R01668
KEGG Pathwayko00240,ko01100,map00240,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MazG-like family
EggNOG OGs2S210@2759,34MAP@3041,37UWM@33090,COG1694@1
EC3.6.1.12
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.4001868-CDS-L-elsbetiae_contig18378:1781..19641622815765.4001868-CDS-L-elsbetiae_contig18378:1781..1964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18378 1782..1964 +
1691683088.0330071-CDS-L-elsbetiae_contig18378:1781..19641691683088.0330071-CDS-L-elsbetiae_contig18378:1781..1964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18378 1782..1964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18378.5327.1prot_L-elsbetiae_contig18378.5327.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18378 1782..1964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18378.5327.1

>prot_L-elsbetiae_contig18378.5327.1 ID=prot_L-elsbetiae_contig18378.5327.1|Name=mRNA_L-elsbetiae_contig18378.5327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
RDWAQFHTPRNLSLALCGEVGELCELFQFKDEGDCLTGLFGWKKEERDRL
SQVKGVCMLL*
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mRNA from alignment at L-elsbetiae_contig18378:1782..1964+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18378.5327.1 ID=mRNA_L-elsbetiae_contig18378.5327.1|Name=mRNA_L-elsbetiae_contig18378.5327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=183bp|location=Sequence derived from alignment at L-elsbetiae_contig18378:1782..1964+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGATTGGGCTCAGTTCCACACCCCACGGAACCTTTCGTTGGCGTTGTG TGGGGAAGTGGGTGAGCTCTGTGAACTATTTCAGTTCAAGGACGAAGGTG ATTGCCTTACTGGGCTGTTTGGATGGAAGAAGGAGGAACGGGACAGGCTA AGCCAGGTGAAAGGGGTATGTATGCTGCTCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18378:1782..1964+

>mRNA_L-elsbetiae_contig18378.5327.1 ID=mRNA_L-elsbetiae_contig18378.5327.1|Name=mRNA_L-elsbetiae_contig18378.5327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig18378:1782..1964+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGATTGGGCTCAGTTCCACACCCCACGGAACCTTTCGTTGGCGTTGTG
TGGGGAAGTGGGTGAGCTCTGTGAACTATTTCAGTTCAAGGACGAAGGTG
ATTGCCTTACTGGGCTGTTTGGATGGAAGAAGGAGGAACGGGACAGGCTA
AGCCAGGTGAAAGGGGTATGTATGCTGCTCTAAAGGGATTGGGCTCAGTT
CCACACCCCACGGAACCTTTCGTTGGCGTTGTGTGGGGAAGTGGGTGAGC
TCTGTGAACTATTTCAGTTCAAGGACGAAGGTGATTGCCTTACTGGGCTG
TTTGGATGGAAGAAGGAGGAACGGGACAGGCTAAGCCAGGTGAAAGGGGT
ATGTATGCTGCTCTAA
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