Homology
BLAST of mRNA_L-elsbetiae_contig1835.5321.1 vs. uniprot
Match:
D8LT39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT39_ECTSI)
HSP 1 Score: 201 bits (511), Expect = 3.800e-62
Identity = 120/199 (60.30%), Postives = 135/199 (67.84%), Query Frame = 1
Query: 1 IGVAVKTLPISFLKDFGYLREAQQRGLEKTARIMGRMAAVARLRAWQKWRDLANPRRSAEPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRAEHKRGLLQRRLAKVSAASRAVASCLVANAAARRRERFRLARAAVAMVERSYIARKAREQAWREIVVYRKEHAAAGMIQRWTRGALVRRRTPLV 597
+G+ +TLP+S+LKD GYL EAQ+RGLEKT I+ R+A +A+LRAWQKWR L P+RSA +RAE KR LLQRRL KVSAASR VASCL+ANA ARRRER RL RAAVAMVER+YIARKAREQ WREIV+YRKEHAAAGMIQRWTRG LVRRRTPLV
Sbjct: 1 MGMTARTLPLSYLKDIGYLGEAQRRGLEKTTNIVKRVATIAKLRAWQKWRQLGVPKRSA-------GKKATTTGNILCAAVTRGYLARRRVAMIRRERAKAAAQRAELKRSLLQRRLVKVSAASRIVASCLIANAWARRRERRRLVRAAVAMVERNYIARKAREQGWREIVLYRKEHAAAGMIQRWTRGVLVRRRTPLV 192
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1835.5321.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 3.80e-62 / Id = 60.30 Sequence D8LT39_ECTSI
Match Name E-value Identity Description
D8LT39_ECTSI 3.800e-62 60.30 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Ec32 ortholog description hypothetical protein
Ec32 ortholog Ec-08_004040.1
Exons 3
Model size 621
Cds size 621
Stop 1
Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815764.9002054-CDS-L-elsbetiae_contig1835:15158..15323 1622815764.9002054-CDS-L-elsbetiae_contig1835:15158..15323 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1835 15159..15323 -
1691683087.682893-CDS-L-elsbetiae_contig1835:15158..15323 1691683087.682893-CDS-L-elsbetiae_contig1835:15158..15323 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1835 15159..15323 -
1622815764.9127152-CDS-L-elsbetiae_contig1835:15865..16178 1622815764.9127152-CDS-L-elsbetiae_contig1835:15865..16178 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1835 15866..16178 -
1691683087.6915333-CDS-L-elsbetiae_contig1835:15865..16178 1691683087.6915333-CDS-L-elsbetiae_contig1835:15865..16178 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1835 15866..16178 -
1622815764.9257543-CDS-L-elsbetiae_contig1835:16945..17088 1622815764.9257543-CDS-L-elsbetiae_contig1835:16945..17088 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1835 16946..17088 -
1691683087.7028544-CDS-L-elsbetiae_contig1835:16945..17088 1691683087.7028544-CDS-L-elsbetiae_contig1835:16945..17088 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig1835 16946..17088 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1835.5321.1
>prot_L-elsbetiae_contig1835.5321.1 ID=prot_L-elsbetiae_contig1835.5321.1|Name=mRNA_L-elsbetiae_contig1835.5321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
IGVAVKTLPISFLKDFGYLREAQQRGLEKTARIMGRMAAVARLRAWQKWR DLANPRRSAEPAAAAAAATAAGITRVAVAAAARGYLARRRVAEMRRRRDE AAAKRAEHKRGLLQRRLAKVSAASRAVASCLVANAAARRRERFRLARAAV AMVERSYIARKAREQAWREIVVYRKEHAAAGMIQRWTRGALVRRRTPLVR GSEHRI* back to top mRNA from alignment at L-elsbetiae_contig1835:15159..17088-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1835.5321.1 ID=mRNA_L-elsbetiae_contig1835.5321.1|Name=mRNA_L-elsbetiae_contig1835.5321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1930bp|location=Sequence derived from alignment at L-elsbetiae_contig1835:15159..17088- (Laminarionema elsbetiae ELsaHSoW15)ATAGGAGTCGCGGTAAAAACCTTGCCGATAAGCTTCCTGAAAGACTTCGG
GTATCTCAGAGAGGCGCAGCAGAGAGGGCTGGAGAAGACAGCCAGGATCA
TGGGGAGGATGGCCGCGGTTGCCCGGCTACGCGCGTGGCAGAA GTGAGTC
AGGGTAGTTCCCTCCAGATTGGGGTTGGTTGAGGCTGCGATCGGCTCCAG
CATGCCTACAGGAAGATGCTTGATGGGGGGTATGACTATACTTACTATTG
GCTTGTAGAAACACGCCGTGATCGTCGGAGTCGGAAATCAACGCTACATG
ACACTTCAATACACTCTTGCGTTTTGGTTTTTCTTCTTCACATTTATTTC
CAGTGCTCGATGGGCTCCCTGTCACGAGGACATCTTGCCAGAGTACTGAG
CCGTGGTCACACAGAAGGGTTCCTTCCCCCCCGAAGGCCCCCACTCCCCC
CGTCTGCGGTGCTTGCCTAAGACGTTTGTCGCGAGAAGGGTTCAGCCGTC
CCTTTCCCTCGTCGACGGTGATGTCGAAGTTTGTGTACACACGCTAAGCG
CTATCCACTGACAGGGACGGAAGCGAGAGAACAAACTCACTTCGCAAGAA
AAAATCGCTTCCGCTGAGATTCGAACTCACGACCTGCCTGCTAGAAGGTG
TTTGGGGGTACCAACTAGACCACCGGGGTGAGTATATATACGTAGAAGTA
TATCTCCCTGGGCGGGGATCGGGCGGGGATCGAGGAAGTGTGCGCCCGCT
CGTGTCGTCAAAGCGTCCGGGCACCCGCCATACTTGACGAACCGTATTTT
CAATCCACCCACCACTGAAGAATCACCCGGCCGCAAAAAATTGAAAAAAA
ACATCCCAATCGACTTCCACGGGGCTACGATCCCAAGACTTTCATCGCCT
CGTTCTCCAGGTGGCGAGATCTCGCAAACCCCCGCCGCTCGGCTGAGCCC
GCTGCCGCCGCTGCCGCCGCCACCGCCGCCGGCATCACTCGCGTCGCCGT
CGCCGCCGCCGCTCGGGGCTACCTGGCCAGACGGCGCGTCGCGGAGATGC
GTAGGCGGAGGGACGAAGCGGCGGCGAAAAGGGCGGAGCACAAGCGGGGC
CTGCTGCAGCGCCGGCTGGCTAAGGTGTCGGCGGCCTCGAGGGCGGTGGC
CTCGTGCCTCGTCGCGAACGCGGCGGCCAGAAGACGAGAGAGATTTCGGC
TGGCCCGGGCCGCCGTGGCCATG GTGAGAGAGGGCGGGTAGACCTTTTAG
GGGGAGGGACGCGGGTACGAAGACGAACGCATCTATTGGCGCATTTTGTT
TTGCAGTTTCGAAGGGGTTGCTGGTGGCGAGCGAACCCGGTGTTGGCAAC
CCCGATGGCAGGGGGTAGAGTGGATCATGGTTCATTCATTCCTATCAAGA
CTTCCTTTTCGGCCGTGGCGCGGGTAAGGTTGAACCCGTCTGGGGTGGGC
GTGGTCGTGGTTGGGCAACCATCGCCGAATCTAGAAAAGGAGCGCTGGGT
CGTGCGTGCCGCCAAGGCATAAGGCCGAGCGGGGGTGAAACTGACGATTG
AGCACCGTAGGGGAAGGAGAGGGGGGGTTCACACGCATCCACGCGTCTCG
TCCAGCCACCGCACACGGGGATTCCCTGTTCTACAGGCACAGGCTTTAGA
GGACAAGTCTTGTTGAAAAATCGTGGGTGACGGCATGCATCTTCATACAC
AGCTGTTTCGACCTGCGACCCATGTAGAGCAAACGTGCCCAACACCCGTT
TGGCGCTCGGTTTAGGTGGAGCGCAGCTACATCGCTCGCAAGGCCAGGGA
ACAGGCGTGGCGGGAGATTGTTGTTTACCGAAAGGAACACGCTGCGGCGG
GCATGATACAGCGGTGGACTCGCGGGGCGCTGGTGAGGCGACGAACCCCG
CTGGTGAGAGGTTCAGAACATAGGATATAA back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1835:15159..17088-
>mRNA_L-elsbetiae_contig1835.5321.1 ID=mRNA_L-elsbetiae_contig1835.5321.1|Name=mRNA_L-elsbetiae_contig1835.5321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig1835:15159..17088- (Laminarionema elsbetiae ELsaHSoW15) ATAGGAGTCGCGGTAAAAACCTTGCCGATAAGCTTCCTGAAAGACTTCGG GTATCTCAGAGAGGCGCAGCAGAGAGGGCTGGAGAAGACAGCCAGGATCA TGGGGAGGATGGCCGCGGTTGCCCGGCTACGCGCGTGGCAGAAATAGGAG TCGCGGTAAAAACCTTGCCGATAAGCTTCCTGAAAGACTTCGGGTATCTC AGAGAGGCGCAGCAGAGAGGGCTGGAGAAGACAGCCAGGATCATGGGGAG GATGGCCGCGGTTGCCCGGCTACGCGCGTGGCAGAAGTGGCGAGATCTCG CAAACCCCCGCCGCTCGGCTGAGCCCGCTGCCGCCGCTGCCGCCGCCACC GCCGCCGGCATCACTCGCGTCGCCGTCGCCGCCGCCGCTCGGGGCTACCT GGCCAGACGGCGCGTCGCGGAGATGCGTAGGCGGAGGGACGAAGCGGCGG CGAAAAGGGCGGAGCACAAGCGGGGCCTGCTGCAGCGCCGGCTGGCTAAG GTGTCGGCGGCCTCGAGGGCGGTGGCCTCGTGCCTCGTCGCGAACGCGGC GGCCAGAAGACGAGAGAGATTTCGGCTGGCCCGGGCCGCCGTGGCCATGG TGGCGAGATCTCGCAAACCCCCGCCGCTCGGCTGAGCCCGCTGCCGCCGC TGCCGCCGCCACCGCCGCCGGCATCACTCGCGTCGCCGTCGCCGCCGCCG CTCGGGGCTACCTGGCCAGACGGCGCGTCGCGGAGATGCGTAGGCGGAGG GACGAAGCGGCGGCGAAAAGGGCGGAGCACAAGCGGGGCCTGCTGCAGCG CCGGCTGGCTAAGGTGTCGGCGGCCTCGAGGGCGGTGGCCTCGTGCCTCG TCGCGAACGCGGCGGCCAGAAGACGAGAGAGATTTCGGCTGGCCCGGGCC GCCGTGGCCATGGTGGAGCGCAGCTACATCGCTCGCAAGGCCAGGGAACA GGCGTGGCGGGAGATTGTTGTTTACCGAAAGGAACACGCTGCGGCGGGCA TGATACAGCGGTGGACTCGCGGGGCGCTGGTGAGGCGACGAACCCCGCTG GTGAGAGGTTCAGAACATAGGATATAAGTGGAGCGCAGCTACATCGCTCG CAAGGCCAGGGAACAGGCGTGGCGGGAGATTGTTGTTTACCGAAAGGAAC ACGCTGCGGCGGGCATGATACAGCGGTGGACTCGCGGGGCGCTGGTGAGG CGACGAACCCCGCTGGTGAGAGGTTCAGAACATAGGATATAA back to top