mRNA_L-elsbetiae_contig183.5298.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig183.5298.1
Unique NamemRNA_L-elsbetiae_contig183.5298.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig183.5298.1 vs. uniprot
Match: D7G292_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G292_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.320e-8
Identity = 54/164 (32.93%), Postives = 68/164 (41.46%), Query Frame = -2 
Query:  528 FRWDADETVVNNDGTXXXXXXXXXXXEASEQDRPRLERLTKLLAHAPQDRAWCRRGFMAMCRPPRTGCGLYSGYPGLHGHVPPT*TGLRLV*GISLTTQMGLSGSSRSSVPTTVLGATR*KLGCHWVVHMEGVCGQQQLVYKEEAWMPMVSAA---GSMVWWPG 1010
             RW ADET VN +G            EA E   P LER++KLLA APQDRAW RRGF+ +CR  R                      +RL   I +       G  +   P       R + G  W+ HME V  Q ++       + +   A   GSMV  PG
Sbjct:  297 LRWGADETAVNLEGETVVSMVIRRIAEALETRCPPLERVSKLLARAPQDRAWRRRGFLVLCRAHRDR--------------------VRLAVEIPVAAAEATEGPQQR--PRCCARTGRWRSGWRWMGHMEAVVEQARVGVAYAPGLELCGKAPSVGSMVCRPG 438
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BLAST of mRNA_L-elsbetiae_contig183.5298.1 vs. uniprot
Match: D7FPN3_ECTSI (Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN3_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.330e-6
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = -2 
Query:  825 DETVVNNDGTXXXXXXXXXXXEASEQDRPRLERLTKLLAHAPQDRAWCRRGFMAMCR 995
            DET+V+N G               E+ RP +ERL+K+LA APQDRAWCRRGF+ MCR
Sbjct:  314 DETIVDNRGRTAYQRLPAID-NVVEEYRPGIERLSKVLARAPQDRAWCRRGFLVMCR 369
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BLAST of mRNA_L-elsbetiae_contig183.5298.1 vs. uniprot
Match: A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.080e-6
Identity = 32/79 (40.51%), Postives = 40/79 (50.63%), Query Frame = -2 
Query:  828 APPCMRCGAERPTPRACCFRWDADETVVNNDGTXXXXXXXXXXXEASEQDRPRLERLTKLLAHAPQDRAWCRRGFMAMC 1064
            +P C  C            RW ADET V++D              A+   R RLER+++LLA APQDRAW RRGF+  C
Sbjct:  161 SPLCSACREGHHDAADLLLRWGADETAVDSDEKTIVSMMTHRIFRAAVASRQRLERVSELLARAPQDRAWRRRGFLVPC 239
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BLAST of mRNA_L-elsbetiae_contig183.5298.1 vs. uniprot
Match: A0A6H5KB54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB54_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.730e-5
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = -2 
Query:  825 EASEQDRPRLERLTKLLAHAPQDRAWCRRGFMAMCR 932
            EA+++D  RLERL+KLL  APQDRAW RRGF+A+CR
Sbjct:  325 EAADEDHRRLERLSKLLTRAPQDRAWRRRGFLALCR 360
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig183.5298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G292_ECTSI3.320e-832.93Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
D7FPN3_ECTSI2.330e-652.63Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ecto... [more]
A0A6H5KFY7_9PHAE3.080e-640.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB54_9PHAE5.730e-569.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig183contigL-elsbetiae_contig183:13384..14568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1185
Cds size759
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.8628626-CDS-L-elsbetiae_contig183:13383..141421622815762.8628626-CDS-L-elsbetiae_contig183:13383..14142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 13384..14142 +
1691683086.3355017-CDS-L-elsbetiae_contig183:13383..141421691683086.3355017-CDS-L-elsbetiae_contig183:13383..14142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 13384..14142 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.8766193-UTR-L-elsbetiae_contig183:14142..145681622815762.8766193-UTR-L-elsbetiae_contig183:14142..14568Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig183 14143..14568 +
1691683086.3463783-UTR-L-elsbetiae_contig183:14142..145681691683086.3463783-UTR-L-elsbetiae_contig183:14142..14568Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig183 14143..14568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig183.5298.1prot_L-elsbetiae_contig183.5298.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig183 13384..14142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig183.5298.1

>prot_L-elsbetiae_contig183.5298.1 ID=prot_L-elsbetiae_contig183.5298.1|Name=mRNA_L-elsbetiae_contig183.5298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=253bp
PSYISGGAILGKIPPVTFPSIFVTQRLYIYQHQRQNVLPPSLAALRLVCR
LGRTFFSPSPTERQGNTGVCCTIPSTGSIQYNHATVEKHRSHPSNANSSL
NIHVQKKTAAQQSSQTRRQNGKKLESTLWRNVAACATRPNTNEQKTSKTG
RHSVLYRNPQDVAMWRNISSSAPHLEPGHHTIEPAADTMGIQASSLYTSC
CCPHTPSMCTTQWHPNFYLVAPSTVVGTLLRLLPDSPICVVRDIPYTRRN
PV*
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mRNA from alignment at L-elsbetiae_contig183:13384..14568+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig183.5298.1 ID=mRNA_L-elsbetiae_contig183.5298.1|Name=mRNA_L-elsbetiae_contig183.5298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1185bp|location=Sequence derived from alignment at L-elsbetiae_contig183:13384..14568+ (Laminarionema elsbetiae ELsaHSoW15)
CCCTCGTATATCTCCGGTGGTGCGATCTTAGGTAAGATACCGCCAGTAAC
CTTCCCGTCGATTTTTGTTACGCAACGTCTGTACATCTATCAACACCAAA
GGCAGAACGTCCTCCCTCCCTCGTTGGCCGCTCTGCGGCTGGTCTGTCGC
CTCGGCCGCACTTTTTTCTCTCCATCCCCTACCGAGAGACAAGGGAACAC
AGGCGTGTGCTGTACGATACCATCCACAGGCAGCATACAATATAACCATG
CCACCGTGGAAAAACACCGAAGCCACCCATCCAACGCGAACAGCAGCCTA
AATATACACGTACAAAAGAAAACAGCGGCACAACAAAGTTCGCAGACACG
GCGGCAAAATGGAAAAAAACTCGAAAGTACGTTGTGGCGCAATGTGGCGG
CATGTGCCACACGTCCGAACACGAACGAACAAAAAACCAGCAAGACTGGC
CGGCATTCGGTGCTCTACAGGAACCCCCAAGATGTGGCGATGTGGCGGAA
TATATCCTCATCGGCCCCCCACCTTGAGCCAGGCCACCATACCATCGAAC
CCGCCGCCGATACCATGGGCATCCAGGCCTCCTCCTTGTACACGAGCTGC
TGCTGCCCGCATACCCCCTCCATGTGCACCACCCAGTGGCACCCCAACTT
TTACCTGGTCGCTCCTAGCACGGTGGTTGGGACGCTGCTGCGGCTGCTGC
CCGATAGCCCCATCTGCGTTGTCAGGGATATCCCCTATACAAGGCGCAAC
CCTGTCTAGGTGGGCGGCACATGGCCATGAAGCCCCGGATATCCACTATA
CAAGCCGCAACCTGTCCTGGGTGGGCGGCACATGGCCATGAAGCCCCGGC
GACACCATGCCCTGTCTTGCGGGGCGTGCGCCAGCAGCTTGGTCAGGCGT
TCGAGTCTCGGGCGGTCCTGCTCGGAAGCTTCCTCGTCGTCTGAAATCCA
CCATTGGCTGGAGGTCGTGCCGTCGTTGTTGACAACGGTCTCATCAGCGT
CCCACCTAAAGCAGCACGCCCGCGGCGTCGGCCTCTCCGCGCCACACCTC
ATGCAAGGGGGGGCCTCAGCGGGCTGACAAAAGTAGAGCGTTTTTTTTTT
CCCACATCACGGCCTCTGGCTTCGATGGTGCCTGGGATGGAGGCTGCTTT
GATGTCCTCTGCGGCGTCGTGCAGGGCCGTCTGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig183:13384..14568+

>mRNA_L-elsbetiae_contig183.5298.1 ID=mRNA_L-elsbetiae_contig183.5298.1|Name=mRNA_L-elsbetiae_contig183.5298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1518bp|location=Sequence derived from alignment at L-elsbetiae_contig183:13384..14568+ (Laminarionema elsbetiae ELsaHSoW15)
CCCTCGTATATCTCCGGTGGTGCGATCTTAGGTAAGATACCGCCAGTAAC
CTTCCCGTCGATTTTTGTTACGCAACGTCTGTACATCTATCAACACCAAA
GGCAGAACGTCCTCCCTCCCTCGTTGGCCGCTCTGCGGCTGGTCTGTCGC
CTCGGCCGCACTTTTTTCTCTCCATCCCCTACCGAGAGACAAGGGAACAC
AGGCGTGTGCTGTACGATACCATCCACAGGCAGCATACAATATAACCATG
CCACCGTGGAAAAACACCGAAGCCACCCATCCAACGCGAACAGCAGCCTA
AATATACACGTACAAAAGAAAACAGCGGCACAACAAAGTTCGCAGACACG
GCGGCAAAATGGAAAAAAACTCGAAAGTACGTTGTGGCGCAATGTGGCGG
CATGTGCCACACGTCCGAACACGAACGAACAAAAAACCAGCAAGACTGGC
CGGCATTCGGTGCTCTACAGGAACCCCCAAGATGTGGCGATGTGGCGGAA
TATATCCTCATCGGCCCCCCACCTTGAGCCAGGCCACCATACCATCGAAC
CCGCCGCCGATACCATGGGCATCCAGGCCTCCTCCTTGTACACGAGCTGC
TGCTGCCCGCATACCCCCTCCATGTGCACCACCCAGTGGCACCCCAACTT
TTACCTGGTCGCTCCTAGCACGGTGGTTGGGACGCTGCTGCGGCTGCTGC
CCGATAGCCCCATCTGCGTTGTCAGGGATATCCCCTATACAAGGCGCAAC
CCTGTCTAGCCCTCGTATATCTCCGGTGGTGCGATCTTAGGTAAGATACC
GCCAGTAACCTTCCCGTCGATTTTTGTTACGCAACGTCTGTACATCTATC
AACACCAAAGGCAGAACGTCCTCCCTCCCTCGTTGGCCGCTCTGCGGCTG
GTCTGTCGCCTCGGCCGCACTTTTTTCTCTCCATCCCCTACCGAGAGACA
AGGGAACACAGGCGTGTGCTGTACGATACCATCCACAGGCAGCATACAAT
ATAACCATGCCACCGTGGAAAAACACCGAAGCCACCCATCCAACGCGAAC
AGCAGCCTAAATATACACGTACAAAAGAAAACAGCGGCACAACAAAGTTC
GCAGACACGGCGGCAAAATGGAAAAAAACTCGAAAGTACGTTGTGGCGCA
ATGTGGCGGCATGTGCCACACGTCCGAACACGAACGAACAAAAAACCAGC
AAGACTGGCCGGCATTCGGTGCTCTACAGGAACCCCCAAGATGTGGCGAT
GTGGCGGAATATATCCTCATCGGCCCCCCACCTTGAGCCAGGCCACCATA
CCATCGAACCCGCCGCCGATACCATGGGCATCCAGGCCTCCTCCTTGTAC
ACGAGCTGCTGCTGCCCGCATACCCCCTCCATGTGCACCACCCAGTGGCA
CCCCAACTTTTACCTGGTCGCTCCTAGCACGGTGGTTGGGACGCTGCTGC
GGCTGCTGCCCGATAGCCCCATCTGCGTTGTCAGGGATATCCCCTATACA
AGGCGCAACCCTGTCTAG
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