mRNA_L-elsbetiae_contig1823.5272.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1823.5272.1
Unique NamemRNA_L-elsbetiae_contig1823.5272.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1823.5272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1823contigL-elsbetiae_contig1823:21058..23165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_001340.1
Exons2
Model size595
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1823.5272.1prot_L-elsbetiae_contig1823.5272.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1823 21089..23030 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815760.6345046-UTR-L-elsbetiae_contig1823:21057..210881622815760.6345046-UTR-L-elsbetiae_contig1823:21057..21088Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1823 21058..21088 +
1691683085.0091987-UTR-L-elsbetiae_contig1823:21057..210881691683085.0091987-UTR-L-elsbetiae_contig1823:21057..21088Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1823 21058..21088 +
1622815760.6780658-UTR-L-elsbetiae_contig1823:23030..231651622815760.6780658-UTR-L-elsbetiae_contig1823:23030..23165Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1823 23031..23165 +
1691683085.038826-UTR-L-elsbetiae_contig1823:23030..231651691683085.038826-UTR-L-elsbetiae_contig1823:23030..23165Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1823 23031..23165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815760.6492672-CDS-L-elsbetiae_contig1823:21088..211401622815760.6492672-CDS-L-elsbetiae_contig1823:21088..21140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1823 21089..21140 +
1691683085.0196955-CDS-L-elsbetiae_contig1823:21088..211401691683085.0196955-CDS-L-elsbetiae_contig1823:21088..21140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1823 21089..21140 +
1622815760.666552-CDS-L-elsbetiae_contig1823:22653..230301622815760.666552-CDS-L-elsbetiae_contig1823:22653..23030Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1823 22654..23030 +
1691683085.0294137-CDS-L-elsbetiae_contig1823:22653..230301691683085.0294137-CDS-L-elsbetiae_contig1823:22653..23030Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1823 22654..23030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1823.5272.1

>prot_L-elsbetiae_contig1823.5272.1 ID=prot_L-elsbetiae_contig1823.5272.1|Name=mRNA_L-elsbetiae_contig1823.5272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MRAPSSKFVGTVFALGAGCVATEAFLQPPAVGNLRQTGAGFAPAAAPVSH
KSGVEVLRPSAAAAAGRTHAPGLRPSAWGGGSLGEKAGGEGTEASKTKQQ
QGTYCCVVYISISLSAYIYIYIYFFVCPLLDFVICTKAKITT*
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mRNA from alignment at L-elsbetiae_contig1823:21058..23165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1823.5272.1 ID=mRNA_L-elsbetiae_contig1823.5272.1|Name=mRNA_L-elsbetiae_contig1823.5272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2108bp|location=Sequence derived from alignment at L-elsbetiae_contig1823:21058..23165+ (Laminarionema elsbetiae ELsaHSoW15)
CACTACCCGTCCGCACTGAGTGGGTGTAAGCATGCGAGCTCCGTCGTCAA
AGTTCGTTGGGACAGTCTTCGCCTTGGGAGCAGGTGGGTCGGCAATGCTG
TAACCGTTTTCCTGAAGTGTCAAAAAATAAAAAAATGGGCGAAGTTGAAC
ACGGACGGTGGATCTGAGCTGTTGAACATGACACACCAGCTCAACAACAC
TGGCATCCATTGAGAAGATTCCTGCTGTAAGAATCGTTGGTACGGCACGA
CCAAAGGAGTGTGCGGCTCTCTTTCCCACTTCTGTGGGATACGAGATGTA
GGCACACGGAAGGGTAACGTGTGTACGTACCGTCGTGTATGTACGACACA
AGATAATACGGAGTACACAGGATAATACACCCCCTGGACCGATTTTCAGA
GCTCAAGGACTCCACAGCGAGAAAGAGTGCCAGTCCCGAAAAGGGCGGCG
TTGGAAAGACCTCATCAAGATCTGTCCGAAAACGTGTCGTTTGGTAGGTA
TTAGAATCATACATATGTACTCGTTTGCGGAGTATTGTAACCAAGCTTTG
AAAATCGGTCCAGGGGGTGTGTTGTCTTGTGTCGTACATACATACACGGT
GCCACAGCAGCAGTTGCTCTCCGCCCGCCTCGACTGTCGAACTCTCCCGC
GGATGGATATGCATTTAATCGAGGTGCAGAAAGGCCACGATTGAAAGGCT
ACGAAGCACCGATTTTTCATCGAAAGACACCCTGGGGGAACACGTACCGT
GTATCACGCAAGATAACACACCCCCTGGGCCGATTTTTAAAGATCCAGTA
CTCGACAGCGAGAAGAGGGTTCAGTCCCGAAAAGGGCGGCGTTGGAAATA
TCTCATCAAGAGCTATCCGAAAACGTGTCGTTTGGTATTATAATCACACT
CGTTGCGGAGTAACCGACCTTTGGAAATCGGTCCAAGGGGTGTGTTATCT
TGTGTCGTATACGGTAGTCTCAGCAGATGTCTGGCATACCGTGCATCGGA
GACCATAAACCTACATACATTTGTATATGGTATCGGTATGCGGCACGTAC
ACTCTGCGATGAGCGTGGAAAATGATGCCACTTGTGTAGAGCGAGAACAC
GACAACCAGAAAGGAGAAAGGAGCAGTCAATCACCCGGTTCGAGATACGT
TGCACAACAGCAGTTCCTGTACCGGGAAAACATCGCCCGTCCCGTTCTCA
GCACCACACCTGCCGCGACCGCTCGCGCCCGGGCTACACACACATACCAT
ACATACAAAGTTCCCCTTTCAGACGTTGCTCATGACCGGAACAATTCAGG
GGGTGAAGCAAGAGAACAAACAGTGTTGACTGCTGTTCGAGCCGCGCAAC
ACTGTTAGTTGCGGTGCCACACTAGACACGTGCCACGTGCGTCGCCAGCC
TGAAGAGTCGCCTGAAAAGCCTGGTTCCAGTGCGTGGACTTGATCAACAG
CCTCCAGACCCTGCACCCAGGGAAAACTCAATCTGTATATAGTAGCTATT
TAGTACTACCATGAGTCATTAGTATGTACATACATACCCGTCGTCACATC
GACCATCGCCGACCCCCCCCCCACCCTTCCCGTGCTCTCGTGTCAGGCTG
TGTCGCCACCGAGGCGTTTCTACAACCACCTGCTGTGGGGAATTTGCGAC
AGACAGGCGCGGGGTTCGCCCCAGCAGCAGCCCCTGTTTCACACAAGTCG
GGCGTCGAGGTTCTTCGGCCAAGCGCGGCGGCCGCGGCAGGCCGCACTCA
CGCCCCCGGGCTGCGACCGAGCGCTTGGGGAGGAGGATCGCTCGGAGAAA
AAGCTGGGGGGGAAGGGACAGAGGCGAGCAAGACAAAGCAACAACAAGGT
ACGTACTGCTGTGTAGTTTACATCTCGATTAGTCTAAGTGCATATATATA
TATATATATTTATTTTTTTGTCTGCCCATTATTGGATTTTGTCATATGTA
CAAAGGCAAAGATTACTACATAGGTAAGCATCTACGCCCCCCACGGGTTT
TCAGGGCTTTTGAAAGTGTTGAATCTGGTTACAATAGGAAGATCGAACCG
AGTATATAACCTCGTTCCACCTAAGCGCGATCGCGGTTGCGGCTCTCCCA
GAGCAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1823:21058..23165+

>mRNA_L-elsbetiae_contig1823.5272.1 ID=mRNA_L-elsbetiae_contig1823.5272.1|Name=mRNA_L-elsbetiae_contig1823.5272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig1823:21058..23165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAGCTCCGTCGTCAAAGTTCGTTGGGACAGTCTTCGCCTTGGGAGC
AGATGCGAGCTCCGTCGTCAAAGTTCGTTGGGACAGTCTTCGCCTTGGGA
GCAGGCTGTGTCGCCACCGAGGCGTTTCTACAACCACCTGCTGTGGGGAA
TTTGCGACAGACAGGCGCGGGGTTCGCCCCAGCAGCAGCCCCTGTTTCAC
ACAAGTCGGGCGTCGAGGTTCTTCGGCCAAGCGCGGCGGCCGCGGCAGGC
CGCACTCACGCCCCCGGGCTGCGACCGAGCGCTTGGGGAGGAGGATCGCT
CGGAGAAAAAGCTGGGGGGGAAGGGACAGAGGCGAGCAAGACAAAGCAAC
AACAAGGTACGTACTGCTGTGTAGTTTACATCTCGATTAGTCTAAGTGCA
TATATATATATATATATTTATTTTTTTGTCTGCCCATTATTGGATTTTGT
CATATGTACAAAGGCAAAGATTACTACATAGGCTGTGTCGCCACCGAGGC
GTTTCTACAACCACCTGCTGTGGGGAATTTGCGACAGACAGGCGCGGGGT
TCGCCCCAGCAGCAGCCCCTGTTTCACACAAGTCGGGCGTCGAGGTTCTT
CGGCCAAGCGCGGCGGCCGCGGCAGGCCGCACTCACGCCCCCGGGCTGCG
ACCGAGCGCTTGGGGAGGAGGATCGCTCGGAGAAAAAGCTGGGGGGGAAG
GGACAGAGGCGAGCAAGACAAAGCAACAACAAGGTACGTACTGCTGTGTA
GTTTACATCTCGATTAGTCTAAGTGCATATATATATATATATATTTATTT
TTTTGTCTGCCCATTATTGGATTTTGTCATATGTACAAAGGCAAAGATTA
CTACATAG
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