mRNA_L-elsbetiae_contig18229.5268.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18229.5268.1
Unique NamemRNA_L-elsbetiae_contig18229.5268.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18229.5268.1 vs. uniprot
Match: UPI001470A7CA (zinc finger BED domain-containing protein 1-like n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001470A7CA)

HSP 1 Score: 58.9 bits (141), Expect = 4.200e-7
Identity = 49/152 (32.24%), Postives = 74/152 (48.68%), Query Frame = 1
Query:   49 TNKLLHHLNQHHRQHTGFVAARDAHEAKKNSRGVKNDGDIRRHFPKGALSIKERNSIIAEFIVKDIEEYSTVESTHFRKMVRGLAGQPDFAFPDRKDIVK-EVRRKAEDVKMAVKLGIRNKP-LALTFDGWESRAGKRSYSLTCSVVGDDRE 498
            T  L  HL++HH       AA  + +     +    D    +       +IK  +S++  FI  D+  Y  VE+  FR MV  L  +P +  P R+ I++  V RK E+VK  VK  + +   +ALT DGW SRA +   ++TC  + DD E
Sbjct:   51 TTNLRAHLHRHHADK--LAAAPKSQQKPVELKQTTLDNTTYKFPSTSPRAIKITDSVV-HFICLDLRPYCVVENRGFRYMVNTL--EPRYVIPTRRYIIEIAVPRKYEEVKEHVKTSLTSAARVALTCDGWTSRATQLYVTITCHFITDDWE 197          
BLAST of mRNA_L-elsbetiae_contig18229.5268.1 vs. uniprot
Match: A0A672G1D4_SALFA (BED-type domain-containing protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672G1D4_SALFA)

HSP 1 Score: 58.5 bits (140), Expect = 5.540e-7
Identity = 50/165 (30.30%), Postives = 75/165 (45.45%), Query Frame = 1
Query:   13 CLIC-GFIASCKATNKLLHHLNQHHRQHTGFVAARDAHEAKKNSRGVKNDGDIRRHFPKGALSIKERNSIIAEFIVKDIEEYSTVESTHFRKMVRGLAGQPDFAFPDRKDIVKE-VRRKAEDVKMAVKLGIRN-KPLALTFDGWESRAGKRSYSLTCSVVGDDRE 498
            C IC   +  C  T  L  HL +HH +    V A    E +   R   N   +    P  +   +     +  FI KD+  YS V++  FR M+  L  +P +  P R  I +  V +  E+VK AVK  +   + +ALT DGW SRA +   ++T   + D+ E
Sbjct:   79 CKICLALVKYCGNTTNLRAHLARHHAE----VLA----EKQPQKRIEPNQTTVDALLPSNSPRAQRITEAVVHFICKDLRPYSVVDNVGFRWMLHTL--EPRYRIPQRVHITETAVPKMYEEVKTAVKTSLSTAQRVALTCDGWTSRATESYITITSHYISDNWE 233          
BLAST of mRNA_L-elsbetiae_contig18229.5268.1 vs. uniprot
Match: UPI00193A58C3 (E3 SUMO-protein ligase ZBED1-like n=3 Tax=Styela clava TaxID=7725 RepID=UPI00193A58C3)

HSP 1 Score: 58.5 bits (140), Expect = 5.710e-7
Identity = 31/91 (34.07%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  214 SIIAEFIVKDIEEYSTVESTHFRKMVRGLAGQPDFAFPDRKDIVKEVRRKAEDVKMAVKLGIRN-KPLALTFDGWESRAGKRSYSLTCSVV 483
            S++ +FIVKD+   ST+E THF++++  +A  P+++ P R+ I + V  +  + KM +K  + N K ++LTFD W S   +    +T   V
Sbjct:   90 SLVVDFIVKDMRPLSTIEGTHFKRLMGHVA--PNYSLPSRRTITRRVEEEYCEKKMELKRVLENIKHMSLTFDAWTSVKMEAYLGITAHYV 178          
BLAST of mRNA_L-elsbetiae_contig18229.5268.1 vs. uniprot
Match: UPI001E1D43FE (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D43FE)

HSP 1 Score: 58.5 bits (140), Expect = 5.760e-7
Identity = 37/106 (34.91%), Postives = 56/106 (52.83%), Query Frame = 1
Query:  178 FPKGALSIKERNSIIAEFIVKDIEEYSTVESTHFRKMVRGLAGQPDFAFPDRKDIV-KEVRRKAEDVKMAVKLGIRNKPLALTFDGWESRAGKRSYSLTCSVVGDD 492
             P  +   K   S I +FIVKD+  +S VE+T F+ +V+ L  +P +  P R+    K V      VK  VK  +R++ +ALT DGW SRA +   ++T   +  D
Sbjct:   62 LPSTSSRAKAITSAITQFIVKDLRPFSVVENTGFKNLVKVL--EPKYTVPSRQHFSDKMVPELYNKVKYEVKNEVRDRFIALTTDGWTSRATQSYITITTCHIDSD 165          
BLAST of mRNA_L-elsbetiae_contig18229.5268.1 vs. uniprot
Match: UPI00117697EF (zinc finger BED domain-containing protein 1-like isoform X1 n=2 Tax=Salarias fasciatus TaxID=181472 RepID=UPI00117697EF)

HSP 1 Score: 58.5 bits (140), Expect = 5.870e-7
Identity = 50/165 (30.30%), Postives = 75/165 (45.45%), Query Frame = 1
Query:   13 CLIC-GFIASCKATNKLLHHLNQHHRQHTGFVAARDAHEAKKNSRGVKNDGDIRRHFPKGALSIKERNSIIAEFIVKDIEEYSTVESTHFRKMVRGLAGQPDFAFPDRKDIVKE-VRRKAEDVKMAVKLGIRN-KPLALTFDGWESRAGKRSYSLTCSVVGDDRE 498
            C IC   +  C  T  L  HL +HH +    V A    E +   R   N   +    P  +   +     +  FI KD+  YS V++  FR M+  L  +P +  P R  I +  V +  E+VK AVK  +   + +ALT DGW SRA +   ++T   + D+ E
Sbjct:   79 CKICLALVKYCGNTTNLRAHLARHHAE----VLA----EKQPQKRIEPNQTTVDALLPSNSPRAQRITEAVVHFICKDLRPYSVVDNVGFRWMLHTL--EPRYRIPQRVHITETAVPKMYEEVKTAVKTSLSTAQRVALTCDGWTSRATESYITITSHYISDNWE 233          
BLAST of mRNA_L-elsbetiae_contig18229.5268.1 vs. uniprot
Match: UPI002013D797 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI002013D797)

HSP 1 Score: 56.6 bits (135), Expect = 2.690e-6
Identity = 36/109 (33.03%), Postives = 57/109 (52.29%), Query Frame = 1
Query:  178 FPKGALSIKERNSIIAEFIVKDIEEYSTVESTHFRKMVRGLAGQPDFAFPDRKDIV-KEVRRKAEDVKMAVKLGIRNKP-LALTFDGWESRAGKRSYSLTCSVVGDDRE 498
             P  ++  ++    +  +I K +  YS VE+T F  M+  L   P +  P R  +  K V R  + VK +VK  + + P +ALTFDGW SRA +   ++TC  V ++ E
Sbjct:  167 LPSNSVRAQKITESVVHYICKGLCPYSVVENTGFHLMINTL--DPRYVIPTRSYMTDKAVPRMYDKVKDSVKSALSSVPRVALTFDGWTSRATEAFVTITCHYVNEEWE 273          
BLAST of mRNA_L-elsbetiae_contig18229.5268.1 vs. uniprot
Match: A0A8C1JAT0_CYPCA (BED-type domain-containing protein n=6 Tax=Osteoglossocephalai TaxID=1489341 RepID=A0A8C1JAT0_CYPCA)

HSP 1 Score: 54.3 bits (129), Expect = 1.660e-5
Identity = 36/109 (33.03%), Postives = 56/109 (51.38%), Query Frame = 1
Query:  178 FPKGALSIKERNSIIAEFIVKDIEEYSTVESTHFRKMVRGLAGQPDFAFPDRKDIV-KEVRRKAEDVKMAVKLGIRNKP-LALTFDGWESRAGKRSYSLTCSVVGDDRE 498
             P  ++  ++    +  +I K +  YS VE+T FR M+  L   P +  P R  +  K V R  + VK  VK  + + P +ALT DGW SRA +   ++TC  V ++ E
Sbjct:   88 LPSNSVRAQKITESVVHYICKGLCPYSVVENTGFRFMINTL--DPRYVIPTRSYMTDKAVPRMYDKVKDNVKSALSSAPRVALTCDGWTSRATEAFVTITCHYVNEEWE 194          
BLAST of mRNA_L-elsbetiae_contig18229.5268.1 vs. uniprot
Match: A0A3Q2ZE89_KRYMA (BED-type domain-containing protein n=9 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q2ZE89_KRYMA)

HSP 1 Score: 54.3 bits (129), Expect = 1.660e-5
Identity = 47/169 (27.81%), Postives = 79/169 (46.75%), Query Frame = 1
Query:    1 SRVLCLICGF-IASCKATNKLLHHLNQHHRQHTGFVAARDAHEAKKNSRGVKNDGDIRRHFPKGALSIKERNSIIAEFIVKDIEEYSTVESTHFRKMVRGLAGQPDFAFPDRKDIVK-EVRRKAEDVKMAVKLGIRN-KPLALTFDGWESRAGKRSYSLTCSVVGDDRE 498
            S+V+C +C   +  C  T  L +HL ++H          D       S+  + D       P  +   ++    +A FI KD+  YS VE+  F+ M++ L  +P +A P RK + +  V     +VK  V   +++ + +ALT DGW SRA     ++T   + D+ E
Sbjct:   35 SKVVCKLCQRELKYCSNTTNLRNHLTRYHADALQKAQPVD-------SKQTQIDKSFISKLPSSSARAQKITKSVAVFICKDLRPYSVVENKGFKNMLKIL--EPRYAIPTRKYMTEVAVPSLYTEVKTDVLESLKSAERVALTCDGWTSRATDPYVTITSHFISDEWE 194          
BLAST of mRNA_L-elsbetiae_contig18229.5268.1 vs. uniprot
Match: UPI0018E1E1FD (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Cyprinodon tularosa TaxID=77115 RepID=UPI0018E1E1FD)

HSP 1 Score: 53.9 bits (128), Expect = 2.210e-5
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  202 KERNSIIAEFIVKDIEEYSTVESTHFRKMVRGLAGQPDFAFPDRKDIVKE-VRRKAEDVKMAVKLGIRNKP-LALTFDGWESRAGKRSYSLTCSVVGDDRE 498
            K+    I +FI +D+  YS VE+  F+KM+  L  +P +  P RK   +  V R  ++VK+ VK  + +   +ALT DGW SRA +   ++T   + D  E
Sbjct:   35 KKITESITKFICQDLRPYSVVENRGFKKMISTL--EPRYIIPSRKQFTEVLVPRMYDEVKLQVKKSLDSAECVALTCDGWTSRATESYITITSHHINDSWE 133          
BLAST of mRNA_L-elsbetiae_contig18229.5268.1 vs. uniprot
Match: UPI00165CBCA8 (zinc finger BED domain-containing protein 1-like n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165CBCA8)

HSP 1 Score: 53.5 bits (127), Expect = 2.270e-5
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 1
Query:  220 IAEFIVKDIEEYSTVESTHFRKMVRGLAGQPDFAFPDRKDIVK-EVRRKAEDVKMAVKLGIRNKP-LALTFDGWESRAGKRSYSLTCSVVGDDRE 498
            +  FI  D+  Y  VE+  FR MV  L  +P +  P R+ I    V +K E+VK  VK  + +   +ALT DGW SRA +   ++TC  + +D E
Sbjct:  104 LVRFICLDLRPYCVVENRGFRYMVNTL--EPRYVIPTRRYITDIAVPKKYEEVKERVKTSLSSAARVALTCDGWTSRATESYVTITCHFITEDWE 196          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18229.5268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
UPI001470A7CA4.200e-732.24zinc finger BED domain-containing protein 1-like n... [more]
A0A672G1D4_SALFA5.540e-730.30BED-type domain-containing protein n=1 Tax=Salaria... [more]
UPI00193A58C35.710e-734.07E3 SUMO-protein ligase ZBED1-like n=3 Tax=Styela c... [more]
UPI001E1D43FE5.760e-734.91E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenar... [more]
UPI00117697EF5.870e-730.30zinc finger BED domain-containing protein 1-like i... [more]
UPI002013D7972.690e-633.03E3 SUMO-protein ligase ZBED1-like n=1 Tax=Megalobr... [more]
A0A8C1JAT0_CYPCA1.660e-533.03BED-type domain-containing protein n=6 Tax=Osteogl... [more]
A0A3Q2ZE89_KRYMA1.660e-527.81BED-type domain-containing protein n=9 Tax=Kryptol... [more]
UPI0018E1E1FD2.210e-534.65E3 SUMO-protein ligase ZBED1-like n=1 Tax=Cyprinod... [more]
UPI00165CBCA82.270e-536.84zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18229contigL-elsbetiae_contig18229:1727..2224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815760.531261-CDS-L-elsbetiae_contig18229:1726..22241622815760.531261-CDS-L-elsbetiae_contig18229:1726..2224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18229 1727..2224 +
1691683084.9709797-CDS-L-elsbetiae_contig18229:1726..22241691683084.9709797-CDS-L-elsbetiae_contig18229:1726..2224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18229 1727..2224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18229.5268.1prot_L-elsbetiae_contig18229.5268.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18229 1727..2224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18229.5268.1

>prot_L-elsbetiae_contig18229.5268.1 ID=prot_L-elsbetiae_contig18229.5268.1|Name=mRNA_L-elsbetiae_contig18229.5268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
SRVLCLICGFIASCKATNKLLHHLNQHHRQHTGFVAARDAHEAKKNSRGV
KNDGDIRRHFPKGALSIKERNSIIAEFIVKDIEEYSTVESTHFRKMVRGL
AGQPDFAFPDRKDIVKEVRRKAEDVKMAVKLGIRNKPLALTFDGWESRAG
KRSYSLTCSVVGDDRE
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mRNA from alignment at L-elsbetiae_contig18229:1727..2224+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18229.5268.1 ID=mRNA_L-elsbetiae_contig18229.5268.1|Name=mRNA_L-elsbetiae_contig18229.5268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig18229:1727..2224+ (Laminarionema elsbetiae ELsaHSoW15)
TCGCGAGTCCTCTGTCTCATCTGCGGCTTTATCGCATCATGCAAGGCGAC GAACAAACTCCTCCACCACCTGAACCAGCACCACCGTCAGCACACGGGGT TTGTAGCAGCGCGCGATGCCCACGAAGCGAAGAAAAACAGTCGCGGCGTG AAGAATGACGGGGACATCCGCCGTCATTTTCCCAAAGGCGCCCTCTCAAT CAAAGAGAGGAACAGCATCATCGCCGAGTTCATCGTGAAGGATATCGAGG AGTACTCCACCGTCGAGTCCACGCACTTTCGCAAGATGGTGCGGGGGCTT GCTGGGCAACCTGATTTCGCGTTTCCTGATCGGAAAGACATCGTCAAGGA GGTGCGGAGGAAGGCGGAGGACGTCAAAATGGCGGTGAAGCTTGGGATTC GGAACAAGCCTCTGGCGCTTACATTCGACGGGTGGGAGTCTCGAGCTGGA AAACGCTCCTACAGTCTCACGTGCAGCGTGGTCGGCGATGACAGAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18229:1727..2224+

>mRNA_L-elsbetiae_contig18229.5268.1 ID=mRNA_L-elsbetiae_contig18229.5268.1|Name=mRNA_L-elsbetiae_contig18229.5268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig18229:1727..2224+ (Laminarionema elsbetiae ELsaHSoW15)
TCGCGAGTCCTCTGTCTCATCTGCGGCTTTATCGCATCATGCAAGGCGAC
GAACAAACTCCTCCACCACCTGAACCAGCACCACCGTCAGCACACGGGGT
TTGTAGCAGCGCGCGATGCCCACGAAGCGAAGAAAAACAGTCGCGGCGTG
AAGAATGACGGGGACATCCGCCGTCATTTTCCCAAAGGCGCCCTCTCAAT
CAAAGAGAGGAACAGCATCATCGCCGAGTTCATCGTGAAGGATATCGAGG
AGTACTCCACCGTCGAGTCCACGCACTTTCGCAAGATGGTGCGGGGGCTT
GCTGGGCAACCTGATTTCGCGTTTCCTGATCGGAAAGACATCGTCAAGGA
GGTGCGGAGGAAGGCGGAGGACGTCAAAATGGCGGTGAAGCTTGGGATTC
GGAACAAGCCTCTGGCGCTTACATTCGACGGGTGGGAGTCTCGAGCTGGA
AAACGCTCCTACAGTCTCACGTGCAGCGTGGTCGGCGATGACAGAGAGTC
GCGAGTCCTCTGTCTCATCTGCGGCTTTATCGCATCATGCAAGGCGACGA
ACAAACTCCTCCACCACCTGAACCAGCACCACCGTCAGCACACGGGGTTT
GTAGCAGCGCGCGATGCCCACGAAGCGAAGAAAAACAGTCGCGGCGTGAA
GAATGACGGGGACATCCGCCGTCATTTTCCCAAAGGCGCCCTCTCAATCA
AAGAGAGGAACAGCATCATCGCCGAGTTCATCGTGAAGGATATCGAGGAG
TACTCCACCGTCGAGTCCACGCACTTTCGCAAGATGGTGCGGGGGCTTGC
TGGGCAACCTGATTTCGCGTTTCCTGATCGGAAAGACATCGTCAAGGAGG
TGCGGAGGAAGGCGGAGGACGTCAAAATGGCGGTGAAGCTTGGGATTCGG
AACAAGCCTCTGGCGCTTACATTCGACGGGTGGGAGTCTCGAGCTGGAAA
ACGCTCCTACAGTCTCACGTGCAGCGTGGTCGGCGATGACAGAGAG
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