mRNA_L-elsbetiae_contig1822.5264.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1822.5264.1
Unique NamemRNA_L-elsbetiae_contig1822.5264.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1822.5264.1 vs. uniprot
Match: A0A6H5KKN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.420e-9
Identity = 66/101 (65.35%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 WSRLCLHAASLSAAEGASXXXXXXXXXXXXXXXXXXXXXXXHKDEAPEGSAPADAEAACAREKAQRDIDEVSMLAAELKGKEKITEEMARDHQLRWIKGLV 303
            WSRLCLHAASLSAAEGA+   XXXXXXXXXXXXXXXXXXXX K EA   +A A  E A  REKAQR+    SM A+EL+ K K TEE  R HQL  +K L 
Sbjct: 1713 WSRLCLHAASLSAAEGAAAAAXXXXXXXXXXXXXXXXXXXXXKAEAWRRAAAASVEVAEIREKAQREAARGSMSASELQLKVKDTEEALRKHQLHRLKMLA 1813
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BLAST of mRNA_L-elsbetiae_contig1822.5264.1 vs. uniprot
Match: D8LQ96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ96_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 2.850e-5
Identity = 50/100 (50.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:    1 WSRLCLHAASLSAAEGASXXXXXXXXXXXXXXXXXXXXXXXHKDEAPEGSAPADAEAACAREKAQRDIDEVSMLAAELKGKEKITEEMARDHQLRWIKGL 300
            WSRLCLHAASLSAAEGAS  XXXXXXXXX                    +          RE+AQR+    S+LAAELK K K TEE  RD QL  +K L
Sbjct: 2664 WSRLCLHAASLSAAEGASAAXXXXXXXXXAEAMEKEAEAAADXXXXWRRAXXXXXXXXXXRERAQREAARGSVLAAELKLKVKDTEEAVRDRQLHRLKML 2763
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1822.5264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKN4_9PHAE3.420e-965.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ96_ECTSI2.850e-550.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1822contigL-elsbetiae_contig1822:14265..14585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size322
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.8775444-CDS-L-elsbetiae_contig1822:14264..145851622815759.8775444-CDS-L-elsbetiae_contig1822:14264..14585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1822 14265..14585 +
1691683084.5255394-CDS-L-elsbetiae_contig1822:14264..145851691683084.5255394-CDS-L-elsbetiae_contig1822:14264..14585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1822 14265..14585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1822.5264.1prot_L-elsbetiae_contig1822.5264.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1822 14265..14585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1822.5264.1

>prot_L-elsbetiae_contig1822.5264.1 ID=prot_L-elsbetiae_contig1822.5264.1|Name=mRNA_L-elsbetiae_contig1822.5264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
WSRLCLHAASLSAAEGASAAATALARAARAKAMEKEAEAAAHKDEAPEGS
APADAEAACAREKAQRDIDEVSMLAAELKGKEKITEEMARDHQLRWIKGL
VRPSGG*
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mRNA from alignment at L-elsbetiae_contig1822:14265..14585+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1822.5264.1 ID=mRNA_L-elsbetiae_contig1822.5264.1|Name=mRNA_L-elsbetiae_contig1822.5264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=321bp|location=Sequence derived from alignment at L-elsbetiae_contig1822:14265..14585+ (Laminarionema elsbetiae ELsaHSoW15)
TGGAGTCGTTTATGCCTACACGCCGCCTCTCTTTCCGCGGCTGAAGGAGC
ATCAGCCGCCGCCACGGCTTTAGCCAGGGCTGCACGAGCCAAGGCGATGG
AGAAGGAGGCGGAAGCAGCAGCCCACAAAGATGAAGCGCCGGAAGGATCG
GCACCTGCCGACGCAGAAGCGGCATGTGCGAGGGAGAAAGCACAACGCGA
CATCGACGAAGTCTCAATGCTGGCGGCTGAGCTGAAGGGCAAGGAGAAAA
TCACGGAGGAGATGGCGCGTGATCATCAGCTACGCTGGATCAAGGGGCTG
GTGAGACCTAGTGGTGGTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1822:14265..14585+

>mRNA_L-elsbetiae_contig1822.5264.1 ID=mRNA_L-elsbetiae_contig1822.5264.1|Name=mRNA_L-elsbetiae_contig1822.5264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig1822:14265..14585+ (Laminarionema elsbetiae ELsaHSoW15)
TGGAGTCGTTTATGCCTACACGCCGCCTCTCTTTCCGCGGCTGAAGGAGC
ATCAGCCGCCGCCACGGCTTTAGCCAGGGCTGCACGAGCCAAGGCGATGG
AGAAGGAGGCGGAAGCAGCAGCCCACAAAGATGAAGCGCCGGAAGGATCG
GCACCTGCCGACGCAGAAGCGGCATGTGCGAGGGAGAAAGCACAACGCGA
CATCGACGAAGTCTCAATGCTGGCGGCTGAGCTGAAGGGCAAGGAGAAAA
TCACGGAGGAGATGGCGCGTGATCATCAGCTACGCTGGATCAAGGGGCTG
GTGAGACCTAGTGGTGGTTAATGGAGTCGTTTATGCCTACACGCCGCCTC
TCTTTCCGCGGCTGAAGGAGCATCAGCCGCCGCCACGGCTTTAGCCAGGG
CTGCACGAGCCAAGGCGATGGAGAAGGAGGCGGAAGCAGCAGCCCACAAA
GATGAAGCGCCGGAAGGATCGGCACCTGCCGACGCAGAAGCGGCATGTGC
GAGGGAGAAAGCACAACGCGACATCGACGAAGTCTCAATGCTGGCGGCTG
AGCTGAAGGGCAAGGAGAAAATCACGGAGGAGATGGCGCGTGATCATCAG
CTACGCTGGATCAAGGGGCTGGTGAGACCTAGTGGTGGTTAA
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