mRNA_L-elsbetiae_contig1821.5261.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1821.5261.1
Unique NamemRNA_L-elsbetiae_contig1821.5261.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1821.5261.1 vs. uniprot
Match: D7FK70_ECTSI (tRNA-splicing endonuclease positive effector n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK70_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 8.500e-12
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 3 
Query:  237 ARFSPKAIRQALESRLTLIQGPPGTGKTQTACSFILVAVRLRKSKRGVRRDCKV 398
            ++   +AIRQALESRLTLIQGPPGTGKT+TAC+ IL AVRLR+SK G RRD KV
Sbjct:  252 SKVQTRAIRQALESRLTLIQGPPGTGKTKTACNLILSAVRLRQSKGGARRDGKV 305
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BLAST of mRNA_L-elsbetiae_contig1821.5261.1 vs. uniprot
Match: A0A6H5L473_9PHAE (AAA_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L473_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 9.720e-12
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:  898 AADNLQEGALELGMRAVRTGRPATVRPAVWHATVDALVETHPGIV 1032
            AADNL EGALELG+RA+R GRPAT+RP +WHAT+DALVE HP +V
Sbjct:  299 AADNLLEGALELGLRALRIGRPATIRPTLWHATLDALVENHPDVV 343
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BLAST of mRNA_L-elsbetiae_contig1821.5261.1 vs. uniprot
Match: A0A7S4DDM0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDM0_HETAK)

HSP 1 Score: 54.7 bits (130), Expect = 1.920e-5
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  898 AADNLQEGALELGMRAVRTGRPATVRPAVWHATVDALVETHP 1023
            AADNL EG L+LG+RAVR GR  +VR  +W AT+D ++ET+P
Sbjct:   20 AADNLLEGLLKLGLRAVRVGRVTSVRRELWPATLDYILETNP 61
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1821.5261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK70_ECTSI8.500e-1274.07tRNA-splicing endonuclease positive effector n=1 T... [more]
A0A6H5L473_9PHAE9.720e-1275.56AAA_11 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S4DDM0_HETAK1.920e-559.52Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1821contigL-elsbetiae_contig1821:14515..17158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue4.2e-09
Seed eggNOG ortholog2880.D7FK70
KEGG koko:K14326
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsCOG1112@1,KOG1802@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Exons5
Model size1235
Cds size381
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.727424-UTR-L-elsbetiae_contig1821:14514..151691622815759.727424-UTR-L-elsbetiae_contig1821:14514..15169Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1821 14515..15169 -
1691683084.4393482-UTR-L-elsbetiae_contig1821:14514..151691691683084.4393482-UTR-L-elsbetiae_contig1821:14514..15169Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1821 14515..15169 -
1622815759.7382958-UTR-L-elsbetiae_contig1821:15185..153771622815759.7382958-UTR-L-elsbetiae_contig1821:15185..15377Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1821 15186..15377 -
1691683084.4522011-UTR-L-elsbetiae_contig1821:15185..153771691683084.4522011-UTR-L-elsbetiae_contig1821:15185..15377Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1821 15186..15377 -
1622815759.8027115-UTR-L-elsbetiae_contig1821:17151..171581622815759.8027115-UTR-L-elsbetiae_contig1821:17151..17158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1821 17152..17158 -
1691683084.5041099-UTR-L-elsbetiae_contig1821:17151..171581691683084.5041099-UTR-L-elsbetiae_contig1821:17151..17158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1821 17152..17158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.751093-CDS-L-elsbetiae_contig1821:15377..155181622815759.751093-CDS-L-elsbetiae_contig1821:15377..15518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1821 15378..15518 -
1691683084.4622111-CDS-L-elsbetiae_contig1821:15377..155181691683084.4622111-CDS-L-elsbetiae_contig1821:15377..15518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1821 15378..15518 -
1622815759.7644532-CDS-L-elsbetiae_contig1821:16192..163141622815759.7644532-CDS-L-elsbetiae_contig1821:16192..16314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1821 16193..16314 -
1691683084.4723227-CDS-L-elsbetiae_contig1821:16192..163141691683084.4723227-CDS-L-elsbetiae_contig1821:16192..16314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1821 16193..16314 -
1622815759.7770176-CDS-L-elsbetiae_contig1821:16872..169481622815759.7770176-CDS-L-elsbetiae_contig1821:16872..16948Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1821 16873..16948 -
1691683084.4830747-CDS-L-elsbetiae_contig1821:16872..169481691683084.4830747-CDS-L-elsbetiae_contig1821:16872..16948Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1821 16873..16948 -
1622815759.7876768-CDS-L-elsbetiae_contig1821:17109..171511622815759.7876768-CDS-L-elsbetiae_contig1821:17109..17151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1821 17110..17151 -
1691683084.493589-CDS-L-elsbetiae_contig1821:17109..171511691683084.493589-CDS-L-elsbetiae_contig1821:17109..17151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1821 17110..17151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1821.5261.1prot_L-elsbetiae_contig1821.5261.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1821 15378..17151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1821.5261.1

>prot_L-elsbetiae_contig1821.5261.1 ID=prot_L-elsbetiae_contig1821.5261.1|Name=mRNA_L-elsbetiae_contig1821.5261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MSATRTMARAHCPHVEKAGGMQPGGAAGGLRISGCARGGDAEWSRITMAQ
SRIPRPECSREDIAHVVAEVTAMAGLSKVQSQSDPAGVGKPTDADPGTSG
HGQDSDCMQLYLGGGQAPKEQARRAT*
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mRNA from alignment at L-elsbetiae_contig1821:14515..17158-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1821.5261.1 ID=mRNA_L-elsbetiae_contig1821.5261.1|Name=mRNA_L-elsbetiae_contig1821.5261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2644bp|location=Sequence derived from alignment at L-elsbetiae_contig1821:14515..17158- (Laminarionema elsbetiae ELsaHSoW15)
CGCTCTAATGTCTGCGACGAGGACGATGGCGCGTGCCCACTGCCCACATG
TGCGTACTCGGAAATACGCGACAAAAAAAAGGGGTTTCCTGTGAACGCAT
GATCTAGGCCCTGCAGACCGCCACCGCCCCGGCGACCATTGCCGTGTACG
CGGTCGTAAGGAGTCCTCATGGTGGACTCGCTGTTCCCGACCTTGGGCCG
CATCGCCCAGGTGGAGAAGGCGGGAGGGATGCAGCCGGGCGGTGCTGCCG
GCGGGTTGCGTATCTCGGGGTGCGCACGAGGAGGAGGTATAAGATAACGC
TTGGGGTGTGCTCTGCATGGTTTTGTGTGTGTGAGTTTTGTTCCGGGGTT
TTCCTGGGGTTTGAGAGGTGGGATGTGGATCGCGGTGTGTGGTGTGTGTG
TTTCATGCTTTTTTCGTGTTGATGTTTCGTGGAGGAGGCCCTGCTGGTGT
TGCCCAAACGTGAACGTTTGGGTGCAAGACGACACCGGGAGGGTGTGGGT
GCAGCCGAGGAGGGCCTAGCATTCATTCTGTAGTGTGCGTAGAGTAATCG
GCGATCATTTTGCTCCCGATGAGTACATGCCGTCGTCGTCATCGTGACCA
TTACATTGTAATAAATCATGGGCAAAAGCAGCTGAGCGGATCTCGTCACG
GGACTTCATTCTGTGTTGTTCTAGATACCACCATTGGATTCTGAATAGAC
GGTGCTGTCTCCGTTTGTTGTTTGGAGCATGCATGTCTTGGGGGGGGCTT
TTCTACGCAGCAAGAGTTGCCACATCCTTTGCATATCAATCAGTCTATGG
TGGCGCTTTCGCCGCGTCCTCCTCCTCCTCCCCGATGCGCACAGACGCTG
AGTGGTCCAGGATTACCATGGCGCAAAGCCGGATCCCGAGGCCGGAGTGC
TCGAGGGAGGACATCGCACACGTGGTCGCGGAGGTGACGGCGATGGCAGG
CCTCAGCAAGGTTCAGGTACGTACGCCCATCCAATCCAATCCAATCCGTT
GTATGCGGTTGGTATTGATCTCGTCGGGGTTGTGCTGCCTACGTTCGATC
TCCCTTTTCCGCACTTTGTTGCTGCAAGGTATGTAGCAACAGCAAACTAG
GATCGTCGTCTGATCTGTGTGCTGTGTTGCCTAGTCCGTAGTGGCGCTTG
GCGCATAGCATGCTTTACGGATAGATACATGTTGAAGTGTTAGGATATGG
TGGTGTTGGCGCTGTTTGTTTTCCTGCTGAAGCACCCCAAAGTTTTCAGG
ATAGCCTGTCTGTGTGCATACTTACCTCAAACAAACCCCAAACCGAAGCC
GATCACTTGATGTTGGCACATGACAATGCCCACCCGGCCCCGCCGTAAAC
ACCTGAATCTATCGGTTGCCTCAATAGTAGCAAACAGCTGTACCCCCCAA
GTAAACCAGCACAAAGAGCAACCCAAAGTAGGTTCAGGCTTGTTGATTTC
GACAAAAAAACGCTTGGTTTTTGTGCAAAAATGTTCCGGTGGGGAGAGAT
GTTGACGTAGAGTGGTGAATGTTGATGCAGTTGCCCCGCGGCAGTTGTTA
TCTTTTCGGCGGCCGTTGTTCGTCAAACGAGCTCTGTCCCACGGAATCCC
CCCCTCCCCTCTGGATATCTATACTACTAATCGAAAACAGTCCCAAAGCG
ATCCGGCAGGCGTTGGAAAGCCGACTGACGCTGATCCAGGGACCTCCGGG
CACGGGCAAGACTCAGACTGCATGCAGCTTTATCTTGGTGGCGGTCAGGC
TCCGAAAGAGCAAGCGCGGCGTGCGACGTGACTGCAAGGTGAGAGAGGGT
GAGGTGGAGAGCCCCATGAGAACGTTGGGAGCACAAGAAAGGGAAGAGAG
AGGAAGAGAGGGAAAAGGAAAGAGAGGGAGATGGACAGAAATAAATAAAG
AGAAAAGCAAAGAGAGGAAGAGAGAGAGAAAAAGAAACAGAGAGGGATCG
GTTGTGGTTCGTCGTCCTTCGAAGTCTGGATCCTTTGAGAGCTTTGGCGC
TGAGTACGATGCGGCGTGCGTGCGGCGGAGGTGCAAAGCGGAAGTGGGTT
GCTTCGTAAGATCCACAGCCTACGCGTGTAGCTCTGTCCCTTTAAGGTAA
AGTGTGTCGACGCATCCGACAGGAGAGACTCTGCCAAAGCGGCATAGGTG
ACCGCCACGATTGTACCCTGCTGGATTCGCCGCCAGAATCGGTGCTCGGC
CTTTTGCCACCAACGCCCGTGTACCTACTCGACTACTTACGCCGTTTCGT
TGGTGTTATGTAGCCGCATACTTCGAAGTATATATGTATGATGGCGACGG
CATTCAGCGGCAGACAACCTGCAGGAGGGCGCTCTCGAGCTCGGGATGCG
CGCCGTCAGGACCGGCCGCCCCGCCACCGTCAGGCCGGCTGTGTGGCACG
CCACGGTGGACGCGCTTGTCGAGACCCACCCGGGGATCGTTGGCGAGGAG
CGTGTACAAAAATAAGCTAAGCTGCCGGTGCTTTGGTGTCATCAGTATCC
TGGTGCATATCCGTGTCCATCTTCTTCTGGCCGCGTATTCGGCTAACTTT
TTGTGCCGACTCCCCTTCAGAACAACACTGCAGCGAGGGTGTTCTAGCGT
GTGGTGTTGAGAGGCACAGCCGACGACGGTCATGGGTACATAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1821:14515..17158-

>mRNA_L-elsbetiae_contig1821.5261.1 ID=mRNA_L-elsbetiae_contig1821.5261.1|Name=mRNA_L-elsbetiae_contig1821.5261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig1821:14515..17158- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGCGACGAGGACGATGGCGCGTGCCCACTGCCCACATATGTCTGC
GACGAGGACGATGGCGCGTGCCCACTGCCCACATGTGGAGAAGGCGGGAG
GGATGCAGCCGGGCGGTGCTGCCGGCGGGTTGCGTATCTCGGGGTGCGCA
CGAGGAGGAGGTGGAGAAGGCGGGAGGGATGCAGCCGGGCGGTGCTGCCG
GCGGGTTGCGTATCTCGGGGTGCGCACGAGGAGGAGACGCTGAGTGGTCC
AGGATTACCATGGCGCAAAGCCGGATCCCGAGGCCGGAGTGCTCGAGGGA
GGACATCGCACACGTGGTCGCGGAGGTGACGGCGATGGCAGGCCTCAGCA
AGGTTCAGACGCTGAGTGGTCCAGGATTACCATGGCGCAAAGCCGGATCC
CGAGGCCGGAGTGCTCGAGGGAGGACATCGCACACGTGGTCGCGGAGGTG
ACGGCGATGGCAGGCCTCAGCAAGGTTCAGTCCCAAAGCGATCCGGCAGG
CGTTGGAAAGCCGACTGACGCTGATCCAGGGACCTCCGGGCACGGGCAAG
ACTCAGACTGCATGCAGCTTTATCTTGGTGGCGGTCAGGCTCCGAAAGAG
CAAGCGCGGCGTGCGACGTGATCCCAAAGCGATCCGGCAGGCGTTGGAAA
GCCGACTGACGCTGATCCAGGGACCTCCGGGCACGGGCAAGACTCAGACT
GCATGCAGCTTTATCTTGGTGGCGGTCAGGCTCCGAAAGAGCAAGCGCGG
CGTGCGACGTGA
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