mRNA_L-elsbetiae_contig18203.5258.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18203.5258.1
Unique NamemRNA_L-elsbetiae_contig18203.5258.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18203.5258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18203contigL-elsbetiae_contig18203:485..1744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size302
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18203.5258.1prot_L-elsbetiae_contig18203.5258.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18203 485..1744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.5166068-CDS-L-elsbetiae_contig18203:484..5881622815759.5166068-CDS-L-elsbetiae_contig18203:484..588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18203 485..588 -
1691683084.349513-CDS-L-elsbetiae_contig18203:484..5881691683084.349513-CDS-L-elsbetiae_contig18203:484..588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18203 485..588 -
1622815759.5270069-CDS-L-elsbetiae_contig18203:1388..15031622815759.5270069-CDS-L-elsbetiae_contig18203:1388..1503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18203 1389..1503 -
1691683084.359034-CDS-L-elsbetiae_contig18203:1388..15031691683084.359034-CDS-L-elsbetiae_contig18203:1388..1503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18203 1389..1503 -
1622815759.5391245-CDS-L-elsbetiae_contig18203:1663..17441622815759.5391245-CDS-L-elsbetiae_contig18203:1663..1744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18203 1664..1744 -
1691683084.367807-CDS-L-elsbetiae_contig18203:1663..17441691683084.367807-CDS-L-elsbetiae_contig18203:1663..1744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18203 1664..1744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18203.5258.1

>prot_L-elsbetiae_contig18203.5258.1 ID=prot_L-elsbetiae_contig18203.5258.1|Name=mRNA_L-elsbetiae_contig18203.5258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
WYVRHNLGTYVELSQWDGVKADDLGRMGVYSENPLLIVLRSPSSAAGAAG
AEAVRSARLKWRREKGPVHGGHDGSRLGGCPGSFDTTGAQRSSSRSGTG*
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mRNA from alignment at L-elsbetiae_contig18203:485..1744-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18203.5258.1 ID=mRNA_L-elsbetiae_contig18203.5258.1|Name=mRNA_L-elsbetiae_contig18203.5258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1260bp|location=Sequence derived from alignment at L-elsbetiae_contig18203:485..1744- (Laminarionema elsbetiae ELsaHSoW15)
TGGTATGTTAGGCACAACTTGGGCACATACGTCGAGCTCTCGCAATGGGA
CGGGGTCAAAGCCGACGACCTGGGCCGCATGGTGAGAATTGTTGTGTTCG
GCACATGAGGGCGCCTAGCCCGTTTCTGCGGACAAGCATTGCTTTCTTGC
ACTGTGCCTGACCGCCCCCAACAATTCGTGAGTCGATAGTGGCCTCATAA
GTTTGAAAGTTGACGTTGTGGTACTTTCCCGTGTTCTGCAGGGGGTCTAC
TCCGAAAACCCCTTGCTTATAGTCCTCCGCTCTCCTAGCTCTGCTGCTGG
GGCGGCGGGGGCGGAGGCTGTGAGGTCTGCCAGGCTGAAATGGAGGAGGG
AAAAAGGCGAGCGGCTGCTGTACTCATTCCGTGTGTTGGCATTGTTGTCC
TTGAGAGGAAGTCAAGCTGTTGATTGTTGTCAATGGTGTCCTCACTCATA
CACGGGTTAGATGGATGTCGCGGTCCAGAGCGCCGAGGTAGCTACCACTT
ATGTTGAGTGCCTCCGGAATTGTGGTTCGAGTACCTGTGTCTCTCCCTCT
GTGTCTATTCTCTATCCAAATCAGGATATACGTCTCTGTCTCTGGATCTA
TTTTTCTACACCTCCAAGTACCGGGTCAGTCGACGATGCCTCTTCTCTCT
TTGCGTGTTTTTCCATGCCAGTCTCGCTCGCGTTCTTCGTCGCATCTTTT
GGAAGTCGACAAGACATGTTGGAGCACATGCGTTGTTCAGCCGTTTGTAC
AGTACTGCAACAGGGGTCGGGTCGCGACAATTCCGCTGCTGCTGCTAGTA
TACGGTATGGGCACACAAGCGTAGGCAGGGCCAGCGCTCAGATATACCTG
ATGAAAGGTTATATTCATTTCAAGCCTCCCTGGAGTGTCCTTCGCTTTTC
CAGCTGCACACATCGTAGTGGGGATCTTCTCTAGGAGACACAACAAAATA
TATTCGTCAAATCTGGAGAACTTTCGTACTTTGAAGGAGGCAGGCTGATC
TAAAGGAGCAGCCGCTGCCACAAGGGCATGTTCTATATCGATCATCACAC
TAGCAGTAGCTCCGGCATACCTCTATGTCATCTACTTCGCTCTCGGCATC
CGCAACAACAATTACAGCAGCCTTTGTCCATTCTGCACTTTCTGCACTAC
CCGTAGGTCCCGTACACGGTGGCCACGACGGATCGCGCCTCGGTGGTTGT
CCTGGTTCGTTCGACACAACTGGGGCACAAAGGTCGAGCTCTCGCAGCGG
GACGGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18203:485..1744-

>mRNA_L-elsbetiae_contig18203.5258.1 ID=mRNA_L-elsbetiae_contig18203.5258.1|Name=mRNA_L-elsbetiae_contig18203.5258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig18203:485..1744- (Laminarionema elsbetiae ELsaHSoW15)
TGGTATGTTAGGCACAACTTGGGCACATACGTCGAGCTCTCGCAATGGGA
CGGGGTCAAAGCCGACGACCTGGGCCGCATGTGGTATGTTAGGCACAACT
TGGGCACATACGTCGAGCTCTCGCAATGGGACGGGGTCAAAGCCGACGAC
CTGGGCCGCATGGGGGTCTACTCCGAAAACCCCTTGCTTATAGTCCTCCG
CTCTCCTAGCTCTGCTGCTGGGGCGGCGGGGGCGGAGGCTGTGAGGTCTG
CCAGGCTGAAATGGAGGAGGGAAAAAGGGGGTCTACTCCGAAAACCCCTT
GCTTATAGTCCTCCGCTCTCCTAGCTCTGCTGCTGGGGCGGCGGGGGCGG
AGGCTGTGAGGTCTGCCAGGCTGAAATGGAGGAGGGAAAAAGGTCCCGTA
CACGGTGGCCACGACGGATCGCGCCTCGGTGGTTGTCCTGGTTCGTTCGA
CACAACTGGGGCACAAAGGTCGAGCTCTCGCAGCGGGACGGGGTGAGTCC
CGTACACGGTGGCCACGACGGATCGCGCCTCGGTGGTTGTCCTGGTTCGT
TCGACACAACTGGGGCACAAAGGTCGAGCTCTCGCAGCGGGACGGGGTGA
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