mRNA_L-elsbetiae_contig18198.5252.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18198.5252.1
Unique NamemRNA_L-elsbetiae_contig18198.5252.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18198.5252.1 vs. uniprot
Match: A0A6H5JIB4_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIB4_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 3.510e-38
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1
Query:    1 NPQSIAQACLDSMALQLPTKHTFVPLMDLCNSFLGSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKILQVLL 228
            NPQSIAQACLDSMALQLPTKHTF PLMDLCNSFLGSPEPH+RKAAVA+LGVMSEGCAEPIKARL DILPKILQ+ L
Sbjct:  340 NPQSIAQACLDSMALQLPTKHTFAPLMDLCNSFLGSPEPHMRKAAVASLGVMSEGCAEPIKARLPDILPKILQLAL 415          
BLAST of mRNA_L-elsbetiae_contig18198.5252.1 vs. uniprot
Match: A0A1E7F5F2_9STRA (ARM repeat-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5F2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.890e-14
Identity = 33/70 (47.14%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   10 SIAQACLDSMALQLPTKHTFVPLMDLCNSFLGSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKILQ 219
            S+AQ  LD +A ++P K+ F P++  C   L SP+P++RKA VA LGV++EGC+EP+   LA+++P +LQ
Sbjct:  319 SMAQGTLDMLACEIPKKYIFQPVVSRCVQRLNSPQPNLRKAGVACLGVIAEGCSEPLSDHLAELMPYVLQ 388          
BLAST of mRNA_L-elsbetiae_contig18198.5252.1 vs. uniprot
Match: A0A835ZQ81_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ81_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.370e-13
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 1
Query:   22 ACLDSMALQLPTKHTFVPLMDLCNSFLGSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKILQVLLSWRGVFIKAGC 261
            A LD +AL LP +  F P M+LC     SP+PH RKA VA +GV++EGC E I+  L  ILPKIL   +       +  C
Sbjct:  738 AALDQLALYLPGRFIFPPAMELCGQCFDSPDPHTRKAGVAVMGVITEGCNELIRMNLDQILPKILHAAVDPEPAVRECAC 817          
BLAST of mRNA_L-elsbetiae_contig18198.5252.1 vs. uniprot
Match: K0RCI5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RCI5_THAOC)

HSP 1 Score: 73.6 bits (179), Expect = 2.530e-13
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   13 IAQACLDSMALQLPTKHTFVPLMDLCNSFLGSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKILQ 219
            +AQ  LD +A ++P K+ F P++  C S L SP+P  RKA VA LGV++EGCAEP++  LA+++P + +
Sbjct:  358 MAQGTLDMLACEVPKKYIFEPVVSRCMSRLASPDPAQRKAGVACLGVIAEGCAEPLREHLAEVMPHVFK 426          
BLAST of mRNA_L-elsbetiae_contig18198.5252.1 vs. uniprot
Match: A0A7S4MQ84_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MQ84_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.420e-13
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   10 SIAQACLDSMALQLPTKHTFVPLMDLCNSFLGSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKILQ 219
            S+AQ  LD +A +LP ++ F P++  C + L SP P+ RKA +A LGV++EGCAEP++  L D++P + +
Sbjct:  253 SMAQGTLDMLACELPKRYIFQPVVSRCVARLSSPHPNHRKAGIACLGVVAEGCAEPLREHLNDVMPHVFR 322          
BLAST of mRNA_L-elsbetiae_contig18198.5252.1 vs. uniprot
Match: A0A7S4VET3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VET3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.640e-13
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   10 SIAQACLDSMALQLPTKHTFVPLMDLCNSFLGSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKI 213
            S+AQ  LD +A +LP K+ F P++  C + L SP  H RKA +A LGV++EGCAEP++  L D++P +
Sbjct:  356 SMAQGTLDMLACELPKKYIFNPVVSRCVTRLTSPHAHHRKAGIACLGVIAEGCAEPLREHLPDVMPHV 423          
BLAST of mRNA_L-elsbetiae_contig18198.5252.1 vs. uniprot
Match: A0A7S2VZY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZY9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.210e-12
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   10 SIAQACLDSMALQLPTKHTFVPLMDLCNSFLGSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKI 213
            S+AQ  LD +A ++P K+ F PL+  C + L SP+ + RKA +A LGV++EGCAEP++  L D++P +
Sbjct:  348 SMAQGTLDMLACEIPKKYIFNPLISRCITRLQSPQANQRKAGIACLGVIAEGCAEPLREHLPDVMPHV 415          
BLAST of mRNA_L-elsbetiae_contig18198.5252.1 vs. uniprot
Match: A0A7S2LHD8_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LHD8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.210e-12
Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   13 IAQACLDSMALQLPTKHTFVPLMDLCNSFLGSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKILQ 219
            +AQ  LD +A ++P K  F P++  C S LGS +P  RKA +A LGV++EGCAEP++  LA ++P + +
Sbjct:   58 MAQGTLDMLACEVPKKFIFEPVVSRCMSRLGSTDPKQRKAGIACLGVIAEGCAEPLRENLAQVMPHVFK 126          
BLAST of mRNA_L-elsbetiae_contig18198.5252.1 vs. uniprot
Match: B8C0J3_THAPS (Ran binding protein 4-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0J3_THAPS)

HSP 1 Score: 67.8 bits (164), Expect = 2.710e-11
Identity = 29/69 (42.03%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   13 IAQACLDSMALQLPTKHTFVPLMDLCNSFLGSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKILQ 219
            +AQ  LD +A ++P K+ F P++  C + LGS   + RKA +A LGV++EGCAEP++  LA ++P + +
Sbjct:  337 MAQGTLDMLACEIPKKYIFEPVVSRCVARLGSANANQRKAGIACLGVIAEGCAEPLRENLAQVMPHVFK 405          
BLAST of mRNA_L-elsbetiae_contig18198.5252.1 vs. uniprot
Match: A0A448YYP5_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYP5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.710e-11
Identity = 29/70 (41.43%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   10 SIAQACLDSMALQLPTKHTFVPLMDLCNSFLGSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKILQ 219
            S+AQ  LD +A ++P K+ F P++  C   L SP+ + RKA +A+LGV++EGC EP+   L++++P +L+
Sbjct:  350 SMAQGTLDMLACEVPKKYIFQPVVSRCVQRLNSPQANHRKAGIASLGVIAEGCQEPLSDHLSELMPYVLK 419          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18198.5252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIB4_9PHAE3.510e-3892.11Importin N-terminal domain-containing protein n=2 ... [more]
A0A1E7F5F2_9STRA3.890e-1447.14ARM repeat-containing protein n=1 Tax=Fragilariops... [more]
A0A835ZQ81_9STRA1.370e-1345.00Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
K0RCI5_THAOC2.530e-1346.38Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4MQ84_9STRA6.420e-1344.29Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S4VET3_9STRA8.640e-1347.06Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S2VZY9_9STRA2.210e-1245.59Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2LHD8_9STRA2.210e-1244.93Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
B8C0J3_THAPS2.710e-1142.03Ran binding protein 4-like protein (Fragment) n=1 ... [more]
A0A448YYP5_9STRA3.710e-1141.43Importin N-terminal domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18198contigL-elsbetiae_contig18198:2189..2449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue1.4e-32
Seed eggNOG ortholog2880.D7FQF7
KEGG koko:K20221
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0000060,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033036,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0140104,GO:0140142
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
Ec32 ortholog descriptionImportin-beta, N-terminal domain
Ec32 orthologEc-01_006300.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.251078-CDS-L-elsbetiae_contig18198:2188..24491622815758.251078-CDS-L-elsbetiae_contig18198:2188..2449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18198 2189..2449 +
1691683083.4550633-CDS-L-elsbetiae_contig18198:2188..24491691683083.4550633-CDS-L-elsbetiae_contig18198:2188..2449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18198 2189..2449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18198.5252.1prot_L-elsbetiae_contig18198.5252.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18198 2189..2449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18198.5252.1

>prot_L-elsbetiae_contig18198.5252.1 ID=prot_L-elsbetiae_contig18198.5252.1|Name=mRNA_L-elsbetiae_contig18198.5252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
NPQSIAQACLDSMALQLPTKHTFVPLMDLCNSFLGSPEPHVRKAAVAALG
VMSEGCAEPIKARLADILPKILQVLLSWRGVFIKAGC
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mRNA from alignment at L-elsbetiae_contig18198:2189..2449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18198.5252.1 ID=mRNA_L-elsbetiae_contig18198.5252.1|Name=mRNA_L-elsbetiae_contig18198.5252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=261bp|location=Sequence derived from alignment at L-elsbetiae_contig18198:2189..2449+ (Laminarionema elsbetiae ELsaHSoW15)
AATCCGCAGTCGATCGCGCAGGCCTGCCTGGACTCGATGGCGCTGCAGCT GCCGACCAAGCACACGTTCGTGCCGCTCATGGACCTGTGCAACTCGTTCC TCGGCAGCCCCGAGCCGCACGTGCGCAAGGCGGCTGTGGCGGCGCTCGGG GTGATGTCGGAGGGCTGCGCGGAGCCGATCAAGGCGCGCCTCGCTGACAT CCTGCCCAAGATTCTCCAGGTATTGTTGTCATGGCGTGGCGTTTTTATCA AGGCAGGTTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18198:2189..2449+

>mRNA_L-elsbetiae_contig18198.5252.1 ID=mRNA_L-elsbetiae_contig18198.5252.1|Name=mRNA_L-elsbetiae_contig18198.5252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig18198:2189..2449+ (Laminarionema elsbetiae ELsaHSoW15)
AATCCGCAGTCGATCGCGCAGGCCTGCCTGGACTCGATGGCGCTGCAGCT
GCCGACCAAGCACACGTTCGTGCCGCTCATGGACCTGTGCAACTCGTTCC
TCGGCAGCCCCGAGCCGCACGTGCGCAAGGCGGCTGTGGCGGCGCTCGGG
GTGATGTCGGAGGGCTGCGCGGAGCCGATCAAGGCGCGCCTCGCTGACAT
CCTGCCCAAGATTCTCCAGGTATTGTTGTCATGGCGTGGCGTTTTTATCA
AGGCAGGTTGTAATCCGCAGTCGATCGCGCAGGCCTGCCTGGACTCGATG
GCGCTGCAGCTGCCGACCAAGCACACGTTCGTGCCGCTCATGGACCTGTG
CAACTCGTTCCTCGGCAGCCCCGAGCCGCACGTGCGCAAGGCGGCTGTGG
CGGCGCTCGGGGTGATGTCGGAGGGCTGCGCGGAGCCGATCAAGGCGCGC
CTCGCTGACATCCTGCCCAAGATTCTCCAGGTATTGTTGTCATGGCGTGG
CGTTTTTATCAAGGCAGGTTGT
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