mRNA_L-elsbetiae_contig1819.5245.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1819.5245.1 vs. uniprot
Match: A0A6H5JS47_9PHAE (Btz domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS47_9PHAE) HSP 1 Score: 190 bits (482), Expect = 1.810e-49 Identity = 146/167 (87.43%), Postives = 151/167 (90.42%), Query Frame = 1 Query: 694 RVARLAEYAAAKAEEDAIRKERRAIRENPAVIPKLGAFFVHDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGLGRWRADALPSGKKKSGGEQW--ARGKKKPVDPDDDDDLPWGHEGYEEVLRAEEEGRPIASSSGFWSNPTGKGGRSGAWRGG 1188 R AR+AEYAAAKAEEDAI++ERRAIRENPAVIPKLGAFFVHDDRG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G+GRWRADALPS KK G+ AR KKKPVDPD DDLPWGHEGYEEVLRAEEEGRPIASSSGFWSNPTGK GRSGAWRGG Sbjct: 160 REARMAEYAAAKAEEDAIKQERRAIRENPAVIPKLGAFFVHDDRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GVGRWRADALPSPKKNKSGDVGLRARRKKKPVDPDXXDDLPWGHEGYEEVLRAEEEGRPIASSSGFWSNPTGKDGRSGAWRGG 324
BLAST of mRNA_L-elsbetiae_contig1819.5245.1 vs. uniprot
Match: D8LS31_ECTSI (Btz domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS31_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 1.960e-17 Identity = 99/130 (76.15%), Postives = 105/130 (80.77%), Query Frame = 1 Query: 700 ARLAEYAAAKAEEDAIRKERRAIRENPAVIPKLGAFFVHDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEA-GLGRWRADALPSGKKKSGG---EQWARGKKKPVDPDDDDDLPWGHEG 1077 AR+AEYAAAKAEEDAI++ERRAIRENPAVIPKLGAFFVHDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G+GRWRADALPS KK GG +W R V+ D W H G Sbjct: 149 ARMAEYAAAKAEEDAIKQERRAIRENPAVIPKLGAFFVHDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVGRWRADALPSPKKNKGGGVERRWWR-----VERSGGGDCTWVHSG 273 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1819.5245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1819.5245.1 >prot_L-elsbetiae_contig1819.5245.1 ID=prot_L-elsbetiae_contig1819.5245.1|Name=mRNA_L-elsbetiae_contig1819.5245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=312bp MSSRRRKMSEDESSSEEQDDEVLSDQEDTEHEAESVSVADPDEDKAAETVback to top mRNA from alignment at L-elsbetiae_contig1819:3544..8183- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1819.5245.1 ID=mRNA_L-elsbetiae_contig1819.5245.1|Name=mRNA_L-elsbetiae_contig1819.5245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4640bp|location=Sequence derived from alignment at L-elsbetiae_contig1819:3544..8183- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1819:3544..8183- >mRNA_L-elsbetiae_contig1819.5245.1 ID=mRNA_L-elsbetiae_contig1819.5245.1|Name=mRNA_L-elsbetiae_contig1819.5245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1872bp|location=Sequence derived from alignment at L-elsbetiae_contig1819:3544..8183- (Laminarionema elsbetiae ELsaHSoW15)back to top |