mRNA_L-elsbetiae_contig1819.5244.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1819.5244.1
Unique NamemRNA_L-elsbetiae_contig1819.5244.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1819.5244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1819contigL-elsbetiae_contig1819:814..2923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size527
Cds size525
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1819.5244.1prot_L-elsbetiae_contig1819.5244.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1819 815..2923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.5916753-CDS-L-elsbetiae_contig1819:814..8561622815757.5916753-CDS-L-elsbetiae_contig1819:814..856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1819 815..856 -
1691683083.0808878-CDS-L-elsbetiae_contig1819:814..8561691683083.0808878-CDS-L-elsbetiae_contig1819:814..856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1819 815..856 -
1622815757.6059315-CDS-L-elsbetiae_contig1819:1095..11761622815757.6059315-CDS-L-elsbetiae_contig1819:1095..1176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1819 1096..1176 -
1691683083.0895426-CDS-L-elsbetiae_contig1819:1095..11761691683083.0895426-CDS-L-elsbetiae_contig1819:1095..1176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1819 1096..1176 -
1622815757.6161733-CDS-L-elsbetiae_contig1819:2521..29231622815757.6161733-CDS-L-elsbetiae_contig1819:2521..2923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1819 2522..2923 -
1691683083.0975888-CDS-L-elsbetiae_contig1819:2521..29231691683083.0975888-CDS-L-elsbetiae_contig1819:2521..2923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1819 2522..2923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1819.5244.1

>prot_L-elsbetiae_contig1819.5244.1 ID=prot_L-elsbetiae_contig1819.5244.1|Name=mRNA_L-elsbetiae_contig1819.5244.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=175bp
GNAGRGGGGGGGRGSEKETAAGKPAKSSTLTADAKQWTGPPGAAAAAPAI
SAGTATAPAAAAAPVTARPSPLVSAEKPVPATSAELGGARAGTGVSGLAG
ADGVPNMPTASLAQLPSDQRAFLLHTQQQQLVQQQQMQRAQLIQNQQAQQ
QALKNQQQQQQNELYRSQLANEQRF
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mRNA from alignment at L-elsbetiae_contig1819:814..2923-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1819.5244.1 ID=mRNA_L-elsbetiae_contig1819.5244.1|Name=mRNA_L-elsbetiae_contig1819.5244.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2110bp|location=Sequence derived from alignment at L-elsbetiae_contig1819:814..2923- (Laminarionema elsbetiae ELsaHSoW15)
GGGAATGCTGGGAGAGGCGGAGGAGGAGGAGGAGGCCGTGGCAGCGAAAA
AGAGACGGCGGCGGGGAAACCCGCGAAGTCTTCCACGCTGACAGCGGACG
CGAAGCAGTGGACCGGCCCGCCCGGTGCTGCTGCCGCTGCGCCTGCTATC
TCTGCGGGCACAGCGACGGCCCCTGCGGCTGCGGCTGCCCCCGTGACGGC
GAGACCGTCGCCGTTGGTCTCAGCGGAAAAGCCCGTACCGGCGACCAGCG
CAGAGCTCGGCGGGGCGCGGGCTGGGACGGGCGTGTCGGGGTTAGCTGGT
GCGGACGGCGTTCCCAATATGCCTACGGCGTCGCTGGCGCAGCTGCCTTC
GGATCAGAGAGCATTCCTCCTCCACACGCAGCAGCAGCAGCTCGTACAAC
AGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGATGTAAGAACGA
CAGTACTTGTTGGCCGACCTCGCAAATCTTTAGATCTTTGCAAGGGAGAT
GTTGAACTCTTCTGATGTTTTAGGTTGTGTTTCTGCTCGCTTCGCCAAAT
ATTACGTCACTGCTGTATGGAATACCGTTTGAACCCCATATCGAGTCCTT
GCTCTAGTGTGGGGTAGGTTCTATCTTTGATTCATTGTTTATTAAAAAAA
AAGACAGTGGCAGAGGGTTTGGCTGAGCTGAGCTGCGCAGAGGCTCGTTG
ATTCGATTTGATGGTGTGGTCCCGGATGAATGGCTCAGGCGGCCGGTGTG
TATGTTTGTGCACGGAGGGTGCAACGCTCAACGAGGACAAAAAACGAAGA
AGATTTACTTCCACGTAGGAGTGTGTCACTGGAGCAAGAAGGGAAAAAAC
GGTTGCGCGCACTAAGGCCAGTTCTTATGGTCTTCACAAAAGTGGGTAGG
AAATGGTTTTATGCCTGGTTCGCGGAGAAACCCCTAGGCCAATTAAGAAA
ATGTTCCGAAGTCTGCTTAGTTCCAGCCGCACTGGCCGTTGGTCCCTTGC
ATTTGCCACACAAGCCACCAAGGGCAACTCTGCTGGAGGGTAATGATGCT
CAGTAACATGGGGCGCACTGTCTCAAGAGTAGAGAACAATCCATGAGCAG
GAGGGCGAGGAATCGGTGTGTGCGTGTGTTTCTCGGGTGATTGCACCTTT
TCTCACCCAACAAACGCTTTCTGAGAACGGTGAGAAATGTCGTTGGCCAT
TCGCATTTGCCCCACAGGCCACCAAAAAAAACTCTGCTTGACATATGTGA
TGCTCATCAACATGGAGCTTCTATTCTGAAGGCTAGAGCATGATCCGTGA
GCAGGAGGGCGAGCAATCGGTGGTGCCGTGCGTTTTCGGGCCGTTGCACC
ATTTCCCATCGGCATTTTCTGCCCTCCGGAGGGGTTTCTTCGCGAACCAG
GCATAAAACCATTTCCTACCCACTTTTCGGAGACCATAAGAACTGGCCTA
AAAGAGGCCATCCTCGCGAACAGGTTGCACTTGTTGTTGTCTCCACCACA
TTAAAAACCCTTCCGGTCTCTCTATCCAGTACCTCCAGGAGTCTGCATGA
TTTGCTACTCCAACACTGACGCGGTCGATCCCCGTGGTCATAGGATATAT
CTTACCCCAAAAAGTCAAAAATGGTATTCTGAAAACTGAAAAAAAAAACT
GAAAAAAGGGTGCCGTGTATTTTCAAGTTTCCTGAACGAAAACCTACGTT
GTCTCCTTTTTTCGCCGACCCGTCCCGTCCGCCTTGCGACTCGCCAGCAA
CAAATGCAGCGGGCCCAGCTGATTCAGAACCAGCAGGCGCAGCAGCAGGC
GCTCAAGAATCAGCAGCAGCAGCAGCAGGTTCGGCTGGCTGTGTCTCGAG
CTCTGGATTTCGGTATTTAGATGCCGGTTTTTTGTTCACTGCTTTCGTTT
CGGTCCTCCGTGTGTTCTGATGTCCCGCCGCGGTTGGTTTCATGTGTTCC
TTGTCTGTTGTATTTAGACTTTCCCTGAACAGCTGCTGGATGGTGGTTTG
GTTCTAGACCTTCATTTGTGTTGTTTATTTCCGTTCATCGTTGTGGGTTG
TGGCATGTTTCCAACAGAACGAGCTCTACCGCAGCCAGCTGGCGAATGAG
CAGCGGTTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1819:814..2923-

>mRNA_L-elsbetiae_contig1819.5244.1 ID=mRNA_L-elsbetiae_contig1819.5244.1|Name=mRNA_L-elsbetiae_contig1819.5244.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig1819:814..2923- (Laminarionema elsbetiae ELsaHSoW15)
GGGAATGCTGGGAGAGGCGGAGGAGGAGGAGGAGGCCGTGGCAGCGAAAA
AGAGACGGCGGCGGGGAAACCCGCGAAGTCTTCCACGCTGACAGCGGACG
CGAAGCAGTGGACCGGCCCGCCCGGTGCTGCTGCCGCTGCGCCTGCTATC
TCTGCGGGCACAGCGACGGCCCCTGCGGCTGCGGCTGCCCCCGTGACGGC
GAGACCGTCGCCGTTGGTCTCAGCGGAAAAGCCCGTACCGGCGACCAGCG
CAGAGCTCGGCGGGGCGCGGGCTGGGACGGGCGTGTCGGGGTTAGCTGGT
GCGGACGGCGTTCCCAATATGCCTACGGCGTCGCTGGCGCAGCTGCCTTC
GGATCAGAGAGCATTCCTCCTCCACACGCAGCAGCAGCAGCTCGTACAAC
AGGGGAATGCTGGGAGAGGCGGAGGAGGAGGAGGAGGCCGTGGCAGCGAA
AAAGAGACGGCGGCGGGGAAACCCGCGAAGTCTTCCACGCTGACAGCGGA
CGCGAAGCAGTGGACCGGCCCGCCCGGTGCTGCTGCCGCTGCGCCTGCTA
TCTCTGCGGGCACAGCGACGGCCCCTGCGGCTGCGGCTGCCCCCGTGACG
GCGAGACCGTCGCCGTTGGTCTCAGCGGAAAAGCCCGTACCGGCGACCAG
CGCAGAGCTCGGCGGGGCGCGGGCTGGGACGGGCGTGTCGGGGTTAGCTG
GTGCGGACGGCGTTCCCAATATGCCTACGGCGTCGCTGGCGCAGCTGCCT
TCGGATCAGAGAGCATTCCTCCTCCACACGCAGCAGCAGCAGCTCGTACA
ACAGCAACAAATGCAGCGGGCCCAGCTGATTCAGAACCAGCAGGCGCAGC
AGCAGGCGCTCAAGAATCAGCAGCAGCAGCAGCAGCAACAAATGCAGCGG
GCCCAGCTGATTCAGAACCAGCAGGCGCAGCAGCAGGCGCTCAAGAATCA
GCAGCAGCAGCAGCAGAACGAGCTCTACCGCAGCCAGCTGGCGAATGAGC
AGCGGTTTAACGAGCTCTACCGCAGCCAGCTGGCGAATGAGCAGCGGTTT
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