mRNA_L-elsbetiae_contig18178.5241.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18178.5241.1
Unique NamemRNA_L-elsbetiae_contig18178.5241.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18178.5241.1 vs. uniprot
Match: D7G1S6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1S6_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 3.860e-109
Identity = 175/219 (79.91%), Postives = 191/219 (87.21%), Query Frame = 1
Query:    1 RSQGKGMMDLGAMVGGGSET---------QQLREFGSAYGLLADVATTLCPADVLSLFVEEEESRAGGVTLGASAYLRRRPNAEGNGGGQRSIIEVTADEAVGVALALGRQVYVGDDVWEGGRVRVTFVMDGDKMRLNLDNVKGRELSS--EREPAPEQPPAWTIKSRGALSRMSVEEKRECLRATGVRPPRKRALSQSQDQDRDLEDLMLPRMDEAVR 624
            RSQGKGMMD+GA+VG              QQ + FGSAYGLLADVATTLCPAD+LSLFVEEEES AGG+TLGASAYLRRRP+AEG GG QRSIIEVT DEAVGVALALGRQVYV +++WEGGRVRV FVMDGDKMRL+LDNV+GR+LSS  ++E  P QPPAWTIKSRGALSRMSVEEKRECLRATGVRPPRKRALS+S+D DRDLEDLMLPRMDEAVR
Sbjct:  116 RSQGKGMMDMGAIVGXXXXXXXXXXSVTQQQTQAFGSAYGLLADVATTLCPADILSLFVEEEESGAGGITLGASAYLRRRPDAEGRGG-QRSIIEVTTDEAVGVALALGRQVYVDEEIWEGGRVRVKFVMDGDKMRLDLDNVEGRDLSSTSDKEAPPVQPPAWTIKSRGALSRMSVEEKRECLRATGVRPPRKRALSESEDPDRDLEDLMLPRMDEAVR 333          
BLAST of mRNA_L-elsbetiae_contig18178.5241.1 vs. uniprot
Match: A0A7S4F108_CHRCT (Hypothetical protein n=4 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F108_CHRCT)

HSP 1 Score: 85.5 bits (210), Expect = 6.780e-16
Identity = 65/189 (34.39%), Postives = 90/189 (47.62%), Query Frame = 1
Query:   76 FGSAYGLLADVATTLCPADVLSLFVEEEESRAGGVTLGASAYLRRRPNAEGNGGGQRSIIEVTADEAVGVALALGRQVYVGDDVWEGGRVRVTFVMDGDKMRLNL------DNVKGRELSSEREPAPEQPPAWTIKSRGALSRMSVEEKRECLRATGVRPPRKRALSQSQDQDRDLEDLMLPRMDEAVR 624
            F SAY LL D+A   C   V  + +EE +   G + LG +  + R+ +A    G    + E T +EA+G+ALAL RQV+V ++V       V F + G KMRL L      D    R      EP  +    W + S   L  MS E+K     A G++ PR R  +     D  L  L+ P +DEAVR
Sbjct:  144 FFSAYHLLLDIAQRKCGVQVEHVLLEETDL-FGSLRLGGAVVVARQSDA----GLSERVCECTVEEALGIALALDRQVWVEEEVVRAAETPVQFTLQGGKMRLQLRPRTEVDAGSPRPAPDAAEPGAKAVLPWELTSAAELLSMSREDKARSALAAGLQLPRARVAT-----DEALTALLSPLLDEAVR 322          
BLAST of mRNA_L-elsbetiae_contig18178.5241.1 vs. uniprot
Match: A0A7S4BGU4_CHRCT (Hypothetical protein (Fragment) n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BGU4_CHRCT)

HSP 1 Score: 73.6 bits (179), Expect = 4.720e-12
Identity = 55/163 (33.74%), Postives = 76/163 (46.63%), Query Frame = 1
Query:  154 EEESRAGGVTLGASAYLRRRPNAEGNGGGQRSIIEVTADEAVGVALALGRQVYVGDDVWEGGRVRVTFVMDGDKMRLNL------DNVKGRELSSEREPAPEQPPAWTIKSRGALSRMSVEEKRECLRATGVRPPRKRALSQSQDQDRDLEDLMLPRMDEAVR 624
            EE    G + LG +  + R+ +A    G    + E T +EA+G+ALAL RQV+V ++V       V F + G KMRL L      D    R      EP  +    W + S   L  MS E+K     A G++ PR R  +     D  L  L+ P +DEAVR
Sbjct:   92 EETDLFGSLRLGGAVVVARQSDA----GLSERVCECTVEEALGIALALDRQVWVEEEVVRAAETPVQFTLQGGKMRLQLRPRTEVDAGSPRPAPDAAEPGAKAVLPWELTSAAELLSMSREDKARSALAAGLQLPRARVAT-----DEALTALLSPLLDEAVR 245          
BLAST of mRNA_L-elsbetiae_contig18178.5241.1 vs. uniprot
Match: R1G3V7_EMIHU (RING-type domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1G3V7_EMIHU)

HSP 1 Score: 71.2 bits (173), Expect = 9.050e-11
Identity = 54/132 (40.91%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  247 SIIEVTADEAVGVALALGRQVYVGDDVWEGGRVRVTFVMDGDKMRLNL-----DNVKGRELSSEREPAPEQPPAWTIKSRGALSRMSVEEK-RECLRATGVRPPRKRALSQSQDQDRDLEDLMLPRMDEAVR 624
            ++ E TADEA+GVALALG +V V   VWEGGR    +     KMRL +     +  +G E   E E  P  P  W I S   L  +S+E+K R  LRA G+R PR+R  +     +  L  L+ P +DE VR
Sbjct: 1626 TLCECTADEALGVALALGCRVLVDARVWEGGRTAPRYSEQRGKMRLEVMPRTAERAEGEE-GGEGERRPPPPLPWEISSADELLSLSLEDKARSALRA-GLRLPRRREAT-----NEALTQLLEPLLDEDVR 1750          
BLAST of mRNA_L-elsbetiae_contig18178.5241.1 vs. uniprot
Match: A0A7S0L3C8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L3C8_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 1.010e-7
Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 1
Query:  250 IIEVTADEAVGVALALGRQVYVGDDVWEGGRVRVTFVMDGDKMRLNLDN--VKGRELSSEREPAPEQPPAWTIKSRGALSRMSVEEKRECLRATGVRPPRKRALSQSQDQDRDLEDLMLPRMDEAVR 624
            + E T DEA+G+ALALG +VYV + VW       ++ +   K+RL++ +  +   E    R      P  W ++S   L  M+ E       A G+R PR R LS  +     L  ++ P +DEAVR
Sbjct:  237 LCECTVDEALGIALALGGEVYVEETVWLAAMTAPSYSLQRGKLRLDVGSATLPASETVRTRAKRTPSPLPWEVRSATELDVMTTEMLARVALAAGMRLPRARRLSHER-----LLTMIEPLLDEAVR 358          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18178.5241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G1S6_ECTSI3.860e-10979.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4F108_CHRCT6.780e-1634.39Hypothetical protein n=4 Tax=Chrysotila carterae T... [more]
A0A7S4BGU4_CHRCT4.720e-1233.74Hypothetical protein (Fragment) n=2 Tax=Chrysotila... [more]
R1G3V7_EMIHU9.050e-1140.91RING-type domain-containing protein n=2 Tax=Emilia... [more]
A0A7S0L3C8_9EUKA1.010e-733.07Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18178contigL-elsbetiae_contig18178:116..3056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue4.3e-11
Seed eggNOG ortholog2903.EOD40509
Hectar predicted targeting categoryother localisation
EggNOG OGs2E05X@1,2S7MF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_004320.1
Exons5
Model size636
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18178.5241.1prot_L-elsbetiae_contig18178.5241.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18178 116..3038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.4131248-CDS-L-elsbetiae_contig18178:115..2871622815757.4131248-CDS-L-elsbetiae_contig18178:115..287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18178 116..287 -
1691683082.9985793-CDS-L-elsbetiae_contig18178:115..2871691683082.9985793-CDS-L-elsbetiae_contig18178:115..287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18178 116..287 -
1622815757.4240048-CDS-L-elsbetiae_contig18178:788..9101622815757.4240048-CDS-L-elsbetiae_contig18178:788..910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18178 789..910 -
1691683083.009357-CDS-L-elsbetiae_contig18178:788..9101691683083.009357-CDS-L-elsbetiae_contig18178:788..910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18178 789..910 -
1622815757.4344509-CDS-L-elsbetiae_contig18178:1287..14071622815757.4344509-CDS-L-elsbetiae_contig18178:1287..1407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18178 1288..1407 -
1691683083.0182915-CDS-L-elsbetiae_contig18178:1287..14071691683083.0182915-CDS-L-elsbetiae_contig18178:1287..1407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18178 1288..1407 -
1622815757.4458797-CDS-L-elsbetiae_contig18178:1773..18511622815757.4458797-CDS-L-elsbetiae_contig18178:1773..1851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18178 1774..1851 -
1691683083.0281963-CDS-L-elsbetiae_contig18178:1773..18511691683083.0281963-CDS-L-elsbetiae_contig18178:1773..1851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18178 1774..1851 -
1622815757.458687-CDS-L-elsbetiae_contig18178:2912..30381622815757.458687-CDS-L-elsbetiae_contig18178:2912..3038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18178 2913..3038 -
1691683083.0396287-CDS-L-elsbetiae_contig18178:2912..30381691683083.0396287-CDS-L-elsbetiae_contig18178:2912..3038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18178 2913..3038 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.4712207-UTR-L-elsbetiae_contig18178:3038..30561622815757.4712207-UTR-L-elsbetiae_contig18178:3038..3056Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18178 3039..3056 -
1691683083.0494256-UTR-L-elsbetiae_contig18178:3038..30561691683083.0494256-UTR-L-elsbetiae_contig18178:3038..3056Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18178 3039..3056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18178.5241.1

>prot_L-elsbetiae_contig18178.5241.1 ID=prot_L-elsbetiae_contig18178.5241.1|Name=mRNA_L-elsbetiae_contig18178.5241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
MMDLGAMVGGGSETQQLREFGSAYGLLADVATTLCPADVLSLFVEEEESR
AGGVTLGASAYLRRRPNAEGNGGGQRSIIEVTADEAVGVALALGRQVYVG
DDVWEGGRVRVTFVMDGDKMRLNLDNVKGRELSSEREPAPEQPPAWTIKS
RGALSRMSVEEKRECLRATGVRPPRKRALSQSQDQDRDLEDLMLPRMDEA
VRLCG*
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mRNA from alignment at L-elsbetiae_contig18178:116..3056-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18178.5241.1 ID=mRNA_L-elsbetiae_contig18178.5241.1|Name=mRNA_L-elsbetiae_contig18178.5241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2941bp|location=Sequence derived from alignment at L-elsbetiae_contig18178:116..3056- (Laminarionema elsbetiae ELsaHSoW15)
AGATCTCAGGGTAAGGGCATGATGGACCTCGGAGCGATGGTTGGCGGGGG CTCGGAGACCCAGCAGCTCCGGGAGTTCGGCAGCGCGTACGGGCTGCTCG CCGACGTGGCCACCACCCTTTGCCCTGCGGACGTCCTCAGCCTGGTGAGA ACGGATGGGCCGGAAAGAGAGAGACGGACGTCTTGGTCCTCTGGAAAATA ACCCGAACCCTAACCCTAACCCTAACCCCAACCAACGACCCCCCTTTTCC CGGTTTCCATATTTTGTCTCGTAGATCTCGTAGGTCTCGTGTGTTACGAT AGCTGAAGACCAAAACCCTGCGTAGACTACCGCCGTGTCCTCTTCGCCCC CCGTGGTTCTTGTTTGGCGCTTTTTTGCCGTTTCAAGGTGCTTGCTGCTT GCTTGGTGTGTTTCTGGTTGTCGTGGGCGTTGTTGTCGTATGTAGGCGTT TTTGCGAGAGATCGGGCTTTCTCGCCCTCTGGCTTGTCTTGAGAAACCCA CGCGCTCCCTGGTCCCTCCGCCGCCTGCCTTTCACTCTGTAGATAAATGG ACAGAAAAGGGTGCGTTTTTTTCTTTTCCGGGGCTTTTCTTGATGCCCGC GTGTCCCTCCCAAACCACGCCTGTTTTTTTGTCCGCAGTCCCTTGTCTGA GGTGCTGTAGTGTGGACTGCATACGGTACGTTTATCACGCGCGGACCCTT GTCGGAGGCGCCTCTGGTAGACTCAGCTTCCCATTTTTGAGTGGGGTCGA GAGCATGTAGAGCGCGGGAGTCGAGAGCAGGCCTTTGGACGGTATGTACA TGTAGCAGGATCAAAGAAACATCGTTTATTGCTGCTGCTGCTATGCTGTA GTAGTCTAGTCCACAAATCTAGTCTAAAAACAATATTGCTGTTGTTTTAC TCTCCAGTTTTCTTCTGGCGGAGGACTCGGCTTCCCATTTTTGAGGAGTG ATCGCGTCATGCACGACCAGACCAGGTGCACCTACCCGTAGTATACAACA CACGTAGCCCCCAAAAGACCCCGTCAAGCGAGAGTCTTCGGCAAGTATGT ACCACGAAACATCCCTCTTTCCCAACCCCTCCCCCCTGCGAAGCGAACGC GGCCCATACTGAATCGTTTCCCCTCACCAGACCATCCATCCCACTACTCT GTCACCGTCTCGTCGTTCTTATCCATCGCGGTGACGCCGACGTGGACGCA AAAAGTTCGTGGAAGAGGAAGAGAGCCGCGCCGGAGGCGTCACCCTGGGC GCATCCGCGTACCTTCGGCGCCGCCCGAACGCGGTAAGTGGGTCGGTCGC AACCCGCGTGCTCGTTTCTTGTGGTGTTTTGATCCCTTCCACGTTGTACA TACAATTCACCGTGGACGAGAGAGACGGGGGTTGGGGAGGGGGGGCATCT AGGGGCACCCATCAGCCAGCCCCCCCCCCGAGCGATGTGATGCCGTCCGT TTTCCCGTTCTGTTGTTCTGTCGGCATGCATGCGTCCCAACCCATGCTAT TTATATTTCTGCTTTTTCTCTTACTTTTTCCTCGTTTTTTCACGCGTGTG TGCGCGCGCTTCCGCATGTATATATGGACGCGTTGCGCTGGGGCCCCGGG ACCGCCGCTCACACCTGTCATAATTGGCGGCTGGTCCCGTCTCCCCCAGG AAGGCAACGGGGGCGGGCAGCGGAGCATCATCGAGGTCACCGCCGACGAA GCCGTCGGCGTGGCTCTCGCCCTCGGTAGACAGGTGTACGTCGGCGACGA CGTCTGGGAAGGAGGACGGGTGAGTCGAAACGGAAACCTAGACCTGAGTT GGTGCATCCGCGGATCGCCTGGTGTGCTGTAGAGAGAACGTGTTGTTTGT GCACGCACGCGCGCCGGAGTTGATGGCCGTGTTCCCCTCGCGGGAACGGG CGGGTTATGGGAGTGGTGACCATTGCGCGGGGGGGGCTCGCGGAGTATAA AGCCGCTGCCGGTGGTCGGGAGCTTTTGTTTTTTCTCCTACTAAATACGG TGTATGTGAGGGTATTGCACCGCTACTGCTGTTTGCTGGACGCTTGGTGA TATTTCTTCTCTGGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT GCTGCTGCTGCTGTTTGTTGCCGTCCGCCGTCTTTTCTTTCCGAAGGTGC GGGTTACTTTTGTGATGGACGGCGACAAGATGCGGCTGAACCTGGACAAC GTGAAGGGGAGAGAGCTGTCTTCCGAGAGAGAGCCCGCGCCGGAACAGCC CCCGGCATGGACGATAAAGTGAGAGAGAGAGAGAGAGGCGAGAGACCCTG GTCTCTTTGGCCGACGACTAGTCGGGTATGCTGCCTCGTGTTGTCTTTTG CCCTTGGAGCATCATGCGTTTTTGTGTCTCCATGTCGGAGGCTTGTTTGA ACGGTTTCGTATCCAGCCCACAACACCGCTCCGCTGGGAACGACGACCCA AGCGGGTGGGGAAAGCTGGTCGTAATGGCTGTGAATCAATATGTTACGTT GAGAAGCAGGCAGGCCCCCCGGCACGTGCTGTGGCGCTCGCGGGGGCGGC GCGGAATCCAGAGGGGGGGGGGGGGGCGCAGGAACGGTCTCCTTCCTGAT CGACGGACGCGTGCCCAACGATCAAAGATCTCTTCTGCAGGCTTGGAAGC CGCTACATAGGTGGATAGATCATCAGTCATTCCATCATCCAATCCGCCGC CTCGCTTTTGGTTGTCGGTCCCCACCGCGCACGCCCCCCCCCCTCCCCCT GACCGAACCCCCCGCAAAGGTCGAGAGGGGCCCTGTCTCGCATGTCCGTG GAGGAGAAGCGAGAGTGCCTGAGAGCCACCGGCGTCAGGCCCCCGCGAAA GCGAGCGTTGTCACAGTCCCAAGACCAGGACAGGGACCTCGAAGACCTCA TGCTCCCGCGAATGGACGAGGCGGTAAGGCTCTGTGGATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18178:116..3056-

>mRNA_L-elsbetiae_contig18178.5241.1 ID=mRNA_L-elsbetiae_contig18178.5241.1|Name=mRNA_L-elsbetiae_contig18178.5241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig18178:116..3056- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGACCTCGGAGCGATGGTTGGCGGGGGCTCGGAGACCCAGCAGCT
CCGGGAGTTCGGCAGCGCGTACGGGCTGCTCGCCGACGTGGCCACCACCC
TTTGCCCTGCGGACGTCCTCAGCCTGATGATGGACCTCGGAGCGATGGTT
GGCGGGGGCTCGGAGACCCAGCAGCTCCGGGAGTTCGGCAGCGCGTACGG
GCTGCTCGCCGACGTGGCCACCACCCTTTGCCCTGCGGACGTCCTCAGCC
TGTTCGTGGAAGAGGAAGAGAGCCGCGCCGGAGGCGTCACCCTGGGCGCA
TCCGCGTACCTTCGGCGCCGCCCGAACGCGTTCGTGGAAGAGGAAGAGAG
CCGCGCCGGAGGCGTCACCCTGGGCGCATCCGCGTACCTTCGGCGCCGCC
CGAACGCGGAAGGCAACGGGGGCGGGCAGCGGAGCATCATCGAGGTCACC
GCCGACGAAGCCGTCGGCGTGGCTCTCGCCCTCGGTAGACAGGTGTACGT
CGGCGACGACGTCTGGGAAGGAGGACGGGAAGGCAACGGGGGCGGGCAGC
GGAGCATCATCGAGGTCACCGCCGACGAAGCCGTCGGCGTGGCTCTCGCC
CTCGGTAGACAGGTGTACGTCGGCGACGACGTCTGGGAAGGAGGACGGGT
GCGGGTTACTTTTGTGATGGACGGCGACAAGATGCGGCTGAACCTGGACA
ACGTGAAGGGGAGAGAGCTGTCTTCCGAGAGAGAGCCCGCGCCGGAACAG
CCCCCGGCATGGACGATAAAGTGCGGGTTACTTTTGTGATGGACGGCGAC
AAGATGCGGCTGAACCTGGACAACGTGAAGGGGAGAGAGCTGTCTTCCGA
GAGAGAGCCCGCGCCGGAACAGCCCCCGGCATGGACGATAAAGTCGAGAG
GGGCCCTGTCTCGCATGTCCGTGGAGGAGAAGCGAGAGTGCCTGAGAGCC
ACCGGCGTCAGGCCCCCGCGAAAGCGAGCGTTGTCACAGTCCCAAGACCA
GGACAGGGACCTCGAAGACCTCATGCTCCCGCGAATGGACGAGGCGGTAA
GGCTCTGTGGATGAGTCGAGAGGGGCCCTGTCTCGCATGTCCGTGGAGGA
GAAGCGAGAGTGCCTGAGAGCCACCGGCGTCAGGCCCCCGCGAAAGCGAG
CGTTGTCACAGTCCCAAGACCAGGACAGGGACCTCGAAGACCTCATGCTC
CCGCGAATGGACGAGGCGGTAAGGCTCTGTGGATGA
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