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Homology
BLAST of mRNA_L-elsbetiae_contig18178.5241.1 vs. uniprot
Match: D7G1S6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1S6_ECTSI) HSP 1 Score: 328 bits (841), Expect = 3.860e-109 Identity = 175/219 (79.91%), Postives = 191/219 (87.21%), Query Frame = 1
Query: 1 RSQGKGMMDLGAMVGGGSET---------QQLREFGSAYGLLADVATTLCPADVLSLFVEEEESRAGGVTLGASAYLRRRPNAEGNGGGQRSIIEVTADEAVGVALALGRQVYVGDDVWEGGRVRVTFVMDGDKMRLNLDNVKGRELSS--EREPAPEQPPAWTIKSRGALSRMSVEEKRECLRATGVRPPRKRALSQSQDQDRDLEDLMLPRMDEAVR 624
RSQGKGMMD+GA+VG QQ + FGSAYGLLADVATTLCPAD+LSLFVEEEES AGG+TLGASAYLRRRP+AEG GG QRSIIEVT DEAVGVALALGRQVYV +++WEGGRVRV FVMDGDKMRL+LDNV+GR+LSS ++E P QPPAWTIKSRGALSRMSVEEKRECLRATGVRPPRKRALS+S+D DRDLEDLMLPRMDEAVR
Sbjct: 116 RSQGKGMMDMGAIVGXXXXXXXXXXSVTQQQTQAFGSAYGLLADVATTLCPADILSLFVEEEESGAGGITLGASAYLRRRPDAEGRGG-QRSIIEVTTDEAVGVALALGRQVYVDEEIWEGGRVRVKFVMDGDKMRLDLDNVEGRDLSSTSDKEAPPVQPPAWTIKSRGALSRMSVEEKRECLRATGVRPPRKRALSESEDPDRDLEDLMLPRMDEAVR 333
BLAST of mRNA_L-elsbetiae_contig18178.5241.1 vs. uniprot
Match: A0A7S4F108_CHRCT (Hypothetical protein n=4 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F108_CHRCT) HSP 1 Score: 85.5 bits (210), Expect = 6.780e-16 Identity = 65/189 (34.39%), Postives = 90/189 (47.62%), Query Frame = 1
Query: 76 FGSAYGLLADVATTLCPADVLSLFVEEEESRAGGVTLGASAYLRRRPNAEGNGGGQRSIIEVTADEAVGVALALGRQVYVGDDVWEGGRVRVTFVMDGDKMRLNL------DNVKGRELSSEREPAPEQPPAWTIKSRGALSRMSVEEKRECLRATGVRPPRKRALSQSQDQDRDLEDLMLPRMDEAVR 624
F SAY LL D+A C V + +EE + G + LG + + R+ +A G + E T +EA+G+ALAL RQV+V ++V V F + G KMRL L D R EP + W + S L MS E+K A G++ PR R + D L L+ P +DEAVR
Sbjct: 144 FFSAYHLLLDIAQRKCGVQVEHVLLEETDL-FGSLRLGGAVVVARQSDA----GLSERVCECTVEEALGIALALDRQVWVEEEVVRAAETPVQFTLQGGKMRLQLRPRTEVDAGSPRPAPDAAEPGAKAVLPWELTSAAELLSMSREDKARSALAAGLQLPRARVAT-----DEALTALLSPLLDEAVR 322
BLAST of mRNA_L-elsbetiae_contig18178.5241.1 vs. uniprot
Match: A0A7S4BGU4_CHRCT (Hypothetical protein (Fragment) n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BGU4_CHRCT) HSP 1 Score: 73.6 bits (179), Expect = 4.720e-12 Identity = 55/163 (33.74%), Postives = 76/163 (46.63%), Query Frame = 1
Query: 154 EEESRAGGVTLGASAYLRRRPNAEGNGGGQRSIIEVTADEAVGVALALGRQVYVGDDVWEGGRVRVTFVMDGDKMRLNL------DNVKGRELSSEREPAPEQPPAWTIKSRGALSRMSVEEKRECLRATGVRPPRKRALSQSQDQDRDLEDLMLPRMDEAVR 624
EE G + LG + + R+ +A G + E T +EA+G+ALAL RQV+V ++V V F + G KMRL L D R EP + W + S L MS E+K A G++ PR R + D L L+ P +DEAVR
Sbjct: 92 EETDLFGSLRLGGAVVVARQSDA----GLSERVCECTVEEALGIALALDRQVWVEEEVVRAAETPVQFTLQGGKMRLQLRPRTEVDAGSPRPAPDAAEPGAKAVLPWELTSAAELLSMSREDKARSALAAGLQLPRARVAT-----DEALTALLSPLLDEAVR 245
BLAST of mRNA_L-elsbetiae_contig18178.5241.1 vs. uniprot
Match: R1G3V7_EMIHU (RING-type domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1G3V7_EMIHU) HSP 1 Score: 71.2 bits (173), Expect = 9.050e-11 Identity = 54/132 (40.91%), Postives = 71/132 (53.79%), Query Frame = 1
Query: 247 SIIEVTADEAVGVALALGRQVYVGDDVWEGGRVRVTFVMDGDKMRLNL-----DNVKGRELSSEREPAPEQPPAWTIKSRGALSRMSVEEK-RECLRATGVRPPRKRALSQSQDQDRDLEDLMLPRMDEAVR 624
++ E TADEA+GVALALG +V V VWEGGR + KMRL + + +G E E E P P W I S L +S+E+K R LRA G+R PR+R + + L L+ P +DE VR
Sbjct: 1626 TLCECTADEALGVALALGCRVLVDARVWEGGRTAPRYSEQRGKMRLEVMPRTAERAEGEE-GGEGERRPPPPLPWEISSADELLSLSLEDKARSALRA-GLRLPRRREAT-----NEALTQLLEPLLDEDVR 1750
BLAST of mRNA_L-elsbetiae_contig18178.5241.1 vs. uniprot
Match: A0A7S0L3C8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L3C8_9EUKA) HSP 1 Score: 62.0 bits (149), Expect = 1.010e-7 Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 1
Query: 250 IIEVTADEAVGVALALGRQVYVGDDVWEGGRVRVTFVMDGDKMRLNLDN--VKGRELSSEREPAPEQPPAWTIKSRGALSRMSVEEKRECLRATGVRPPRKRALSQSQDQDRDLEDLMLPRMDEAVR 624
+ E T DEA+G+ALALG +VYV + VW ++ + K+RL++ + + E R P W ++S L M+ E A G+R PR R LS + L ++ P +DEAVR
Sbjct: 237 LCECTVDEALGIALALGGEVYVEETVWLAAMTAPSYSLQRGKLRLDVGSATLPASETVRTRAKRTPSPLPWEVRSATELDVMTTEMLARVALAAGMRLPRARRLSHER-----LLTMIEPLLDEAVR 358
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 75.1 |
Seed ortholog evalue | 4.3e-11 |
Seed eggNOG ortholog | 2903.EOD40509 |
Hectar predicted targeting category | other localisation |
EggNOG OGs | 2E05X@1,2S7MF@2759 |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Ec32 ortholog description | conserved unknown protein |
Ec32 ortholog | Ec-07_004320.1 |
Exons | 5 |
Model size | 636 |
Cds size | 618 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815757.4131248-CDS-L-elsbetiae_contig18178:115..287 | 1622815757.4131248-CDS-L-elsbetiae_contig18178:115..287 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig18178 116..287 - |
1691683082.9985793-CDS-L-elsbetiae_contig18178:115..287 | 1691683082.9985793-CDS-L-elsbetiae_contig18178:115..287 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig18178 116..287 - |
1622815757.4240048-CDS-L-elsbetiae_contig18178:788..910 | 1622815757.4240048-CDS-L-elsbetiae_contig18178:788..910 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig18178 789..910 - |
1691683083.009357-CDS-L-elsbetiae_contig18178:788..910 | 1691683083.009357-CDS-L-elsbetiae_contig18178:788..910 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig18178 789..910 - |
1622815757.4344509-CDS-L-elsbetiae_contig18178:1287..1407 | 1622815757.4344509-CDS-L-elsbetiae_contig18178:1287..1407 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig18178 1288..1407 - |
1691683083.0182915-CDS-L-elsbetiae_contig18178:1287..1407 | 1691683083.0182915-CDS-L-elsbetiae_contig18178:1287..1407 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig18178 1288..1407 - |
1622815757.4458797-CDS-L-elsbetiae_contig18178:1773..1851 | 1622815757.4458797-CDS-L-elsbetiae_contig18178:1773..1851 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig18178 1774..1851 - |
1691683083.0281963-CDS-L-elsbetiae_contig18178:1773..1851 | 1691683083.0281963-CDS-L-elsbetiae_contig18178:1773..1851 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig18178 1774..1851 - |
1622815757.458687-CDS-L-elsbetiae_contig18178:2912..3038 | 1622815757.458687-CDS-L-elsbetiae_contig18178:2912..3038 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig18178 2913..3038 - |
1691683083.0396287-CDS-L-elsbetiae_contig18178:2912..3038 | 1691683083.0396287-CDS-L-elsbetiae_contig18178:2912..3038 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig18178 2913..3038 - |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815757.4712207-UTR-L-elsbetiae_contig18178:3038..3056 | 1622815757.4712207-UTR-L-elsbetiae_contig18178:3038..3056 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig18178 3039..3056 - |
1691683083.0494256-UTR-L-elsbetiae_contig18178:3038..3056 | 1691683083.0494256-UTR-L-elsbetiae_contig18178:3038..3056 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig18178 3039..3056 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig18178.5241.1 >prot_L-elsbetiae_contig18178.5241.1 ID=prot_L-elsbetiae_contig18178.5241.1|Name=mRNA_L-elsbetiae_contig18178.5241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
MMDLGAMVGGGSETQQLREFGSAYGLLADVATTLCPADVLSLFVEEEESR AGGVTLGASAYLRRRPNAEGNGGGQRSIIEVTADEAVGVALALGRQVYVG DDVWEGGRVRVTFVMDGDKMRLNLDNVKGRELSSEREPAPEQPPAWTIKS RGALSRMSVEEKRECLRATGVRPPRKRALSQSQDQDRDLEDLMLPRMDEA VRLCG* back to topmRNA from alignment at L-elsbetiae_contig18178:116..3056- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig18178.5241.1 ID=mRNA_L-elsbetiae_contig18178.5241.1|Name=mRNA_L-elsbetiae_contig18178.5241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2941bp|location=Sequence derived from alignment at L-elsbetiae_contig18178:116..3056- (Laminarionema elsbetiae ELsaHSoW15) AGATCTCAGGGTAAGGGCATGATGGACCTCGGAGCGATGGTTGGCGGGGG
CTCGGAGACCCAGCAGCTCCGGGAGTTCGGCAGCGCGTACGGGCTGCTCG
CCGACGTGGCCACCACCCTTTGCCCTGCGGACGTCCTCAGCCTGGTGAGA
ACGGATGGGCCGGAAAGAGAGAGACGGACGTCTTGGTCCTCTGGAAAATA
ACCCGAACCCTAACCCTAACCCTAACCCCAACCAACGACCCCCCTTTTCC
CGGTTTCCATATTTTGTCTCGTAGATCTCGTAGGTCTCGTGTGTTACGAT
AGCTGAAGACCAAAACCCTGCGTAGACTACCGCCGTGTCCTCTTCGCCCC
CCGTGGTTCTTGTTTGGCGCTTTTTTGCCGTTTCAAGGTGCTTGCTGCTT
GCTTGGTGTGTTTCTGGTTGTCGTGGGCGTTGTTGTCGTATGTAGGCGTT
TTTGCGAGAGATCGGGCTTTCTCGCCCTCTGGCTTGTCTTGAGAAACCCA
CGCGCTCCCTGGTCCCTCCGCCGCCTGCCTTTCACTCTGTAGATAAATGG
ACAGAAAAGGGTGCGTTTTTTTCTTTTCCGGGGCTTTTCTTGATGCCCGC
GTGTCCCTCCCAAACCACGCCTGTTTTTTTGTCCGCAGTCCCTTGTCTGA
GGTGCTGTAGTGTGGACTGCATACGGTACGTTTATCACGCGCGGACCCTT
GTCGGAGGCGCCTCTGGTAGACTCAGCTTCCCATTTTTGAGTGGGGTCGA
GAGCATGTAGAGCGCGGGAGTCGAGAGCAGGCCTTTGGACGGTATGTACA
TGTAGCAGGATCAAAGAAACATCGTTTATTGCTGCTGCTGCTATGCTGTA
GTAGTCTAGTCCACAAATCTAGTCTAAAAACAATATTGCTGTTGTTTTAC
TCTCCAGTTTTCTTCTGGCGGAGGACTCGGCTTCCCATTTTTGAGGAGTG
ATCGCGTCATGCACGACCAGACCAGGTGCACCTACCCGTAGTATACAACA
CACGTAGCCCCCAAAAGACCCCGTCAAGCGAGAGTCTTCGGCAAGTATGT
ACCACGAAACATCCCTCTTTCCCAACCCCTCCCCCCTGCGAAGCGAACGC
GGCCCATACTGAATCGTTTCCCCTCACCAGACCATCCATCCCACTACTCT
GTCACCGTCTCGTCGTTCTTATCCATCGCGGTGACGCCGACGTGGACGCA
AAAAGTTCGTGGAAGAGGAAGAGAGCCGCGCCGGAGGCGTCACCCTGGGC
GCATCCGCGTACCTTCGGCGCCGCCCGAACGCGGTAAGTGGGTCGGTCGC
AACCCGCGTGCTCGTTTCTTGTGGTGTTTTGATCCCTTCCACGTTGTACA
TACAATTCACCGTGGACGAGAGAGACGGGGGTTGGGGAGGGGGGGCATCT
AGGGGCACCCATCAGCCAGCCCCCCCCCCGAGCGATGTGATGCCGTCCGT
TTTCCCGTTCTGTTGTTCTGTCGGCATGCATGCGTCCCAACCCATGCTAT
TTATATTTCTGCTTTTTCTCTTACTTTTTCCTCGTTTTTTCACGCGTGTG
TGCGCGCGCTTCCGCATGTATATATGGACGCGTTGCGCTGGGGCCCCGGG
ACCGCCGCTCACACCTGTCATAATTGGCGGCTGGTCCCGTCTCCCCCAGG
AAGGCAACGGGGGCGGGCAGCGGAGCATCATCGAGGTCACCGCCGACGAA
GCCGTCGGCGTGGCTCTCGCCCTCGGTAGACAGGTGTACGTCGGCGACGA
CGTCTGGGAAGGAGGACGGGTGAGTCGAAACGGAAACCTAGACCTGAGTT
GGTGCATCCGCGGATCGCCTGGTGTGCTGTAGAGAGAACGTGTTGTTTGT
GCACGCACGCGCGCCGGAGTTGATGGCCGTGTTCCCCTCGCGGGAACGGG
CGGGTTATGGGAGTGGTGACCATTGCGCGGGGGGGGCTCGCGGAGTATAA
AGCCGCTGCCGGTGGTCGGGAGCTTTTGTTTTTTCTCCTACTAAATACGG
TGTATGTGAGGGTATTGCACCGCTACTGCTGTTTGCTGGACGCTTGGTGA
TATTTCTTCTCTGGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGTTTGTTGCCGTCCGCCGTCTTTTCTTTCCGAAGGTGC
GGGTTACTTTTGTGATGGACGGCGACAAGATGCGGCTGAACCTGGACAAC
GTGAAGGGGAGAGAGCTGTCTTCCGAGAGAGAGCCCGCGCCGGAACAGCC
CCCGGCATGGACGATAAAGTGAGAGAGAGAGAGAGAGGCGAGAGACCCTG
GTCTCTTTGGCCGACGACTAGTCGGGTATGCTGCCTCGTGTTGTCTTTTG
CCCTTGGAGCATCATGCGTTTTTGTGTCTCCATGTCGGAGGCTTGTTTGA
ACGGTTTCGTATCCAGCCCACAACACCGCTCCGCTGGGAACGACGACCCA
AGCGGGTGGGGAAAGCTGGTCGTAATGGCTGTGAATCAATATGTTACGTT
GAGAAGCAGGCAGGCCCCCCGGCACGTGCTGTGGCGCTCGCGGGGGCGGC
GCGGAATCCAGAGGGGGGGGGGGGGGCGCAGGAACGGTCTCCTTCCTGAT
CGACGGACGCGTGCCCAACGATCAAAGATCTCTTCTGCAGGCTTGGAAGC
CGCTACATAGGTGGATAGATCATCAGTCATTCCATCATCCAATCCGCCGC
CTCGCTTTTGGTTGTCGGTCCCCACCGCGCACGCCCCCCCCCCTCCCCCT
GACCGAACCCCCCGCAAAGGTCGAGAGGGGCCCTGTCTCGCATGTCCGTG
GAGGAGAAGCGAGAGTGCCTGAGAGCCACCGGCGTCAGGCCCCCGCGAAA
GCGAGCGTTGTCACAGTCCCAAGACCAGGACAGGGACCTCGAAGACCTCA
TGCTCCCGCGAATGGACGAGGCGGTAAGGCTCTGTGGATGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig18178:116..3056- >mRNA_L-elsbetiae_contig18178.5241.1 ID=mRNA_L-elsbetiae_contig18178.5241.1|Name=mRNA_L-elsbetiae_contig18178.5241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig18178:116..3056- (Laminarionema elsbetiae ELsaHSoW15) ATGATGGACCTCGGAGCGATGGTTGGCGGGGGCTCGGAGACCCAGCAGCT CCGGGAGTTCGGCAGCGCGTACGGGCTGCTCGCCGACGTGGCCACCACCC TTTGCCCTGCGGACGTCCTCAGCCTGATGATGGACCTCGGAGCGATGGTT GGCGGGGGCTCGGAGACCCAGCAGCTCCGGGAGTTCGGCAGCGCGTACGG GCTGCTCGCCGACGTGGCCACCACCCTTTGCCCTGCGGACGTCCTCAGCC TGTTCGTGGAAGAGGAAGAGAGCCGCGCCGGAGGCGTCACCCTGGGCGCA TCCGCGTACCTTCGGCGCCGCCCGAACGCGTTCGTGGAAGAGGAAGAGAG CCGCGCCGGAGGCGTCACCCTGGGCGCATCCGCGTACCTTCGGCGCCGCC CGAACGCGGAAGGCAACGGGGGCGGGCAGCGGAGCATCATCGAGGTCACC GCCGACGAAGCCGTCGGCGTGGCTCTCGCCCTCGGTAGACAGGTGTACGT CGGCGACGACGTCTGGGAAGGAGGACGGGAAGGCAACGGGGGCGGGCAGC GGAGCATCATCGAGGTCACCGCCGACGAAGCCGTCGGCGTGGCTCTCGCC CTCGGTAGACAGGTGTACGTCGGCGACGACGTCTGGGAAGGAGGACGGGT GCGGGTTACTTTTGTGATGGACGGCGACAAGATGCGGCTGAACCTGGACA ACGTGAAGGGGAGAGAGCTGTCTTCCGAGAGAGAGCCCGCGCCGGAACAG CCCCCGGCATGGACGATAAAGTGCGGGTTACTTTTGTGATGGACGGCGAC AAGATGCGGCTGAACCTGGACAACGTGAAGGGGAGAGAGCTGTCTTCCGA GAGAGAGCCCGCGCCGGAACAGCCCCCGGCATGGACGATAAAGTCGAGAG GGGCCCTGTCTCGCATGTCCGTGGAGGAGAAGCGAGAGTGCCTGAGAGCC ACCGGCGTCAGGCCCCCGCGAAAGCGAGCGTTGTCACAGTCCCAAGACCA GGACAGGGACCTCGAAGACCTCATGCTCCCGCGAATGGACGAGGCGGTAA GGCTCTGTGGATGAGTCGAGAGGGGCCCTGTCTCGCATGTCCGTGGAGGA GAAGCGAGAGTGCCTGAGAGCCACCGGCGTCAGGCCCCCGCGAAAGCGAG CGTTGTCACAGTCCCAAGACCAGGACAGGGACCTCGAAGACCTCATGCTC CCGCGAATGGACGAGGCGGTAAGGCTCTGTGGATGA back to top
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