mRNA_L-elsbetiae_contig1817.5239.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1817.5239.1
Unique NamemRNA_L-elsbetiae_contig1817.5239.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1817.5239.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 1.160e-92
Identity = 163/180 (90.56%), Postives = 171/180 (95.00%), Query Frame = 1 
Query:    1 MVPGQPPLPEQVEGKGXXXXXXXVFLRPVPSPLGPKGFKPPTLPQLYAAVSSPDQRGWLDALQVRLVDMVQDEMVACLDEREAAVTTRPNSLTWPEFARQAVSALLLNWAEQDAIFGDTSGAPSQSQAAQGRAARKKVGKGG-KIDPQHLSPACVWLDAQHDAKHGARFIESITGNADEP 537
            MVPGQPPLPEQ +GKG XXXX  VFLRPVPSPLGPKGFK PTLPQLY+AVSSP+QRGWLDALQVRLVDMVQD+MV+ LDEREAAVTTRPNSLTWPEFARQAVSALLLNWAEQDAIFGDTSGAPSQSQAAQGRAARKK+GKGG KI+P HLSPACVWLDAQHDA+HGARFIESITGNAD P
Sbjct:   95 MVPGQPPLPEQTDGKGGXXXXG-VFLRPVPSPLGPKGFKAPTLPQLYSAVSSPEQRGWLDALQVRLVDMVQDQMVSSLDEREAAVTTRPNSLTWPEFARQAVSALLLNWAEQDAIFGDTSGAPSQSQAAQGRAARKKLGKGGGKIEPHHLSPACVWLDAQHDARHGARFIESITGNADNP 273
[Close]
BLAST of mRNA_L-elsbetiae_contig1817.5239.1 vs. uniprot
Match: A0A6H5J6B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6B9_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 8.630e-65
Identity = 130/186 (69.89%), Postives = 137/186 (73.66%), Query Frame = 1 
Query:    1 MVPGQPPLPEQVEGKGXXXXXXXVFLRPVPSPLGPKGFKPPTLPQLYAAVSSPDQRGWLDALQVRLVDMVQDEMVACLDEREAAVTTRPNSLTWPEFARQAVSALLLNWAEQDAIFGDTSGAPSQSQAAQGRAARKKVGKGG-KIDPQHLSPACVWLDAQHDAKHGARFIESITGNADEPPPKKTE 555
            MVPGQPPLPEQ +GKG XXXX  VFLRPVPSPLGPKGFK PTLPQLYAAVSSP+QRGWLDALQVRLVDMVQD+MV+ LDEREAA TTRPNS                                    AAQGRAARKK+GKGG KI+P HLSPACVWLDAQHDA HGAR+IESITGNAD PPP K E
Sbjct:  299 MVPGQPPLPEQTDGKGGXXXXG-VFLRPVPSPLGPKGFKAPTLPQLYAAVSSPEQRGWLDALQVRLVDMVQDQMVSSLDEREAAATTRPNS------------------------------------AAQGRAARKKLGKGGGKIEPHHLSPACVWLDAQHDATHGARYIESITGNADNPPPAKKE 447
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1817.5239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5K5_ECTSI1.160e-9290.56Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J6B9_9PHAE8.630e-6569.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1817contigL-elsbetiae_contig1817:19000..22394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1209
Cds size1209
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1817.5239.1prot_L-elsbetiae_contig1817.5239.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1817 19000..22394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.0799577-CDS-L-elsbetiae_contig1817:18999..191881622815757.0799577-CDS-L-elsbetiae_contig1817:18999..19188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1817 19000..19188 +
1691683082.7850046-CDS-L-elsbetiae_contig1817:18999..191881691683082.7850046-CDS-L-elsbetiae_contig1817:18999..19188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1817 19000..19188 +
1622815757.0922723-CDS-L-elsbetiae_contig1817:19796..198801622815757.0922723-CDS-L-elsbetiae_contig1817:19796..19880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1817 19797..19880 +
1691683082.7968702-CDS-L-elsbetiae_contig1817:19796..198801691683082.7968702-CDS-L-elsbetiae_contig1817:19796..19880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1817 19797..19880 +
1622815757.10256-CDS-L-elsbetiae_contig1817:20108..202161622815757.10256-CDS-L-elsbetiae_contig1817:20108..20216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1817 20109..20216 +
1691683082.8084471-CDS-L-elsbetiae_contig1817:20108..202161691683082.8084471-CDS-L-elsbetiae_contig1817:20108..20216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1817 20109..20216 +
1622815757.1131766-CDS-L-elsbetiae_contig1817:20970..211091622815757.1131766-CDS-L-elsbetiae_contig1817:20970..21109Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1817 20971..21109 +
1691683082.8166976-CDS-L-elsbetiae_contig1817:20970..211091691683082.8166976-CDS-L-elsbetiae_contig1817:20970..21109Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1817 20971..21109 +
1622815757.123538-CDS-L-elsbetiae_contig1817:21705..223941622815757.123538-CDS-L-elsbetiae_contig1817:21705..22394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1817 21706..22394 +
1691683082.8245263-CDS-L-elsbetiae_contig1817:21705..223941691683082.8245263-CDS-L-elsbetiae_contig1817:21705..22394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1817 21706..22394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1817.5239.1

>prot_L-elsbetiae_contig1817.5239.1 ID=prot_L-elsbetiae_contig1817.5239.1|Name=mRNA_L-elsbetiae_contig1817.5239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=403bp
MVPGQPPLPEQVEGKGGGGGGGGVFLRPVPSPLGPKGFKPPTLPQLYAAV
SSPDQRGWLDALQVRLVDMVQDEMVACLDEREAAVTTRPNSLTWPEFARQ
AVSALLLNWAEQDAIFGDTSGAPSQSQAAQGRAARKKVGKGGKIDPQHLS
PACVWLDAQHDAKHGARFIESITGNADEPPPKKTERPPPAHKNKKALGLL
SEGVEVGGDTAASVAAAGGGPAEQADPEAKPEPAVAPPPWAGAVAKKQEQ
QPTNGGMGRGAGTVWGVMASEAGAEAAASAATGLKAPPPSEAHGRSAVAA
SASALAVPEASGVGDTATPPPLLPPPPPPPAVSAEESVGLLTPARTLSGS
SARVAALAIAAEAAAKAAAAKAAAAAAAEALKAASSSGGRKGKLDPAAAG
AEG
back to top

mRNA from alignment at L-elsbetiae_contig1817:19000..22394+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1817.5239.1 ID=mRNA_L-elsbetiae_contig1817.5239.1|Name=mRNA_L-elsbetiae_contig1817.5239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3395bp|location=Sequence derived from alignment at L-elsbetiae_contig1817:19000..22394+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCCCGGGACAGCCGCCGCTCCCGGAGCAAGTGGAGGGCAAGGGCGG
TGGCGGCGGCGGCGGGGGGGTGTTCCTTCGACCCGTGCCGAGCCCCCTCG
GCCCCAAAGGCTTCAAGCCGCCGACGCTGCCGCAGCTGTACGCGGCGGTC
TCCAGTCCAGACCAGCGCGGCTGGCTAGATGCCTTGCAGGTATGATAGAT
TAGGGAGGGCAGGATGGGTGGGGGGGGTTGCAAGGTCGGGTGTCATGGTG
TATGTGTCAGCGGAGACGAAGAGTGGAGGTCTCGCGTGCGCGGGTGTTGT
GGGGGGTAAGAAGAGGGGGGGGGGGGGGTTCGCCGAGTATGTTTTAGTTC
GATACAACACGTAGGGCAAGTTCTGGCTCGAAGGAATTGAGACCTGTGTG
TTGCGTGCCGGCGGATTTCTTCCTCGTTACACTTTCAAGCCATCTCTGCC
TTGCCCGCGACAATAATGAAGTGTCGCTTAAGAGACGGGGGCACTGGAAC
AGGAATGTCTCGTGGATTTTCTTTCCGTCCGAATGTGCTAAATATTTCGT
AATTTGGTAGGCGTTTTTTACTCCGAGTATCGGTGCCTTGACGGCTGGAC
CCCCTAGGTGTAAGTACCTATGTACATACACGTGCTTCACAAGCGAGCCC
CCAGTCTGAACTTGCGCGCGCGCGCGGGGGATCTGTGTCGAATGCGTCCG
GCTGTATGAGCTGTATGAACCTGTGCCATGTACATAATGGCTGTCTGTGC
TCACACCTACATTTGTATCACTCGAAACGTGCCTAAATAACGCACAGGTG
CGGCTTGTGGACATGGTCCAGGACGAGATGGTGGCTTGCCTGGACGAGCG
GGAGGCTGCCGTGACGACCAGACCGAACTCGGTGAGGCGGTCTTAGCAGG
GCAGTGAACAACCGTGCCTTCTCTGTCTGTCTGTCTGCCTGCCTGTCTGT
CTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTGCCTGCC
TGCCTGCCTGCCTGCCTGCCTGGGTAAAATCGCTTCATAACCTTTTCTGT
AATTGCTTCGCATCCTTTTTCGTATCCCTGGACTGGACCGCTCACACACG
CACGCGCAGCTCACGTGGCCGGAGTTCGCCCGCCAAGCCGTGTCGGCTCT
TCTCCTCAACTGGGCGGAGCAGGACGCGATCTTCGGAGACACGTCGGGAG
CACCGTCCCAGTCCCAGGTGTGTGGAGCGGCGCGTCGGGCAGGGCGGGGC
GTTTCTTGTTTTGTGTCCCTTGTCGACTGGATCGGCCGTCCGTTGCCTTT
TTGTCCGGTTGGGGCGGAGGTGACGTGAAAAGGCGCGTTCGCTGTTGGGG
GGTGGGGGTTAGTTGTCAGGCTGGCTCAAGAGTCGGGAAGCAGGCTTCAG
CTCTGGACGCGTCGGTGCGGAACTACACGGCGTGGTGTGATTGGTGCAAT
GCACGCTGGACTCTTTCGGGTGTTCACGTGGCGTACCGTCTCCGTTCTGC
CGTGTGTCGTTCTGCCTTTACTGTTATAGTTGTACAAGTACTCTTCCGTG
GGGGGGGGGGTTGCTGCTTTTTTGGCTTCGGTTGAAGTCTCCCGGGTCCT
TGGTTGACAAAATAAAAACTGATTGACAAGTTTTGTCGCGTGTGGTGTGG
CCGACTGAATAAACAGCTCTCTCACACACACATGTTTTATTTTTTCTTCC
GCGGCGTTGAGTATGCCCTGTTTTGGGGACCACGGTCCCCCCATGGATAA
TTTTAGGACTGTTTAGAGAGCTAATTCGAGAAACAGCAGTAAGCATTCCA
GTTTTCGTCAAGCATATTATACCCAACAGACAACAGCAAGAGGTACATAC
CACCTAGAGCGTCTGTGTTTTATTGTATGCTAGATAAATTACCCTGCATT
CAACGCAGCAGCAGCACCAGGGATATATATTTTCCCTATTGTGCTCATAA
ATCATAAATGCCTCGGCGCAGGCGGCCCAAGGGAGAGCGGCGAGGAAGAA
GGTAGGGAAGGGAGGGAAGATCGACCCGCAGCACCTGTCGCCCGCGTGCG
TGTGGCTCGATGCTCAGCACGACGCCAAGCACGGAGCAAGGTTCATCGAG
AGCATCACAGGTAAGCTCTATTGTATTACGGACGGTACGTATTTACCAAA
TCAGTTAGTGTTCTCCGGGTTGACACATTATGTAGCAGCATCCCGCAGAG
TTAAAAAAAACTCCGCCTGACGACAGGCAGTAGACAATTTGGCTTGCATG
CTGTACCTGATGGCTTTTTTGGAGCAGCCACTCAGTACATATCTACACAA
CCCAGCCGGTCGGAGGTGATGTTGGCGGGTTTTTGCCCTTGAAGATGACG
TAAAGGAACCCTCTCCTCAAGCCGGCGAATTATGTCCAGTTTGTGTCTGC
CGCTTTTGCCGCGGTGCGCGTGTTGGACTGGACGAGGCAGCGTAGACTTG
ACGGGAAGACGTCTGTGTAGGGTATTATGTCCCTGTGTGTGCAGCGCAGC
CTCGCCCCGGCCAACCCTCCTGTGGATGTTGTATGTATGTATGTTGTCCG
TTGTCTCTGTTGGCCGGCCCTCTCTCGCTTATGATGGCGCGTGGTTCGCG
GACGCGTGTCGTGTCTTCACCTACATACGGTACATACATAAACGGCTCGT
TTCTTCCGCTCCCGGGCTGTCTTTCGGTTGGACTGGGGTTGCGGCCGAAC
GAGCAGGGAACGCCGACGAGCCTCCGCCCAAGAAGACGGAGAGACCGCCG
CCCGCGCACAAGAACAAGAAGGCCCTCGGCCTACTGAGCGAGGGGGTGGA
AGTCGGCGGCGACACAGCAGCGTCGGTGGCCGCTGCTGGCGGCGGCCCCG
CGGAGCAGGCAGACCCGGAAGCCAAACCAGAGCCGGCCGTCGCGCCCCCC
CCCTGGGCCGGAGCGGTGGCGAAAAAACAGGAGCAACAGCCTACGAACGG
TGGCATGGGTCGAGGCGCCGGAACGGTGTGGGGGGTTATGGCTTCGGAAG
CGGGAGCAGAAGCAGCGGCGTCGGCGGCAACGGGGCTGAAAGCGCCACCA
CCGTCCGAAGCACACGGGAGGTCGGCGGTCGCGGCTTCGGCTTCGGCTTT
GGCTGTGCCGGAAGCCTCTGGAGTGGGAGACACAGCTACGCCGCCGCCGC
TGCTGCCGCCGCCGCCGCCGCCGCCAGCCGTATCTGCTGAGGAGAGCGTA
GGACTGTTGACGCCGGCACGGACGCTCTCGGGGTCTTCGGCTCGCGTGGC
GGCACTGGCAATCGCAGCGGAAGCAGCAGCAAAGGCGGCCGCCGCTAAGG
CCGCTGCTGCGGCTGCCGCGGAGGCCTTGAAGGCTGCGTCTTCATCGGGC
GGGCGCAAGGGGAAGCTGGACCCGGCGGCGGCGGGCGCGGAAGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1817:19000..22394+

>mRNA_L-elsbetiae_contig1817.5239.1 ID=mRNA_L-elsbetiae_contig1817.5239.1|Name=mRNA_L-elsbetiae_contig1817.5239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2418bp|location=Sequence derived from alignment at L-elsbetiae_contig1817:19000..22394+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCCCGGGACAGCCGCCGCTCCCGGAGCAAGTGGAGGGCAAGGGCGG
TGGCGGCGGCGGCGGGGGGGTGTTCCTTCGACCCGTGCCGAGCCCCCTCG
GCCCCAAAGGCTTCAAGCCGCCGACGCTGCCGCAGCTGTACGCGGCGGTC
TCCAGTCCAGACCAGCGCGGCTGGCTAGATGCCTTGCAGATGGTCCCGGG
ACAGCCGCCGCTCCCGGAGCAAGTGGAGGGCAAGGGCGGTGGCGGCGGCG
GCGGGGGGGTGTTCCTTCGACCCGTGCCGAGCCCCCTCGGCCCCAAAGGC
TTCAAGCCGCCGACGCTGCCGCAGCTGTACGCGGCGGTCTCCAGTCCAGA
CCAGCGCGGCTGGCTAGATGCCTTGCAGGTGCGGCTTGTGGACATGGTCC
AGGACGAGATGGTGGCTTGCCTGGACGAGCGGGAGGCTGCCGTGACGACC
AGACCGAACTCGGTGCGGCTTGTGGACATGGTCCAGGACGAGATGGTGGC
TTGCCTGGACGAGCGGGAGGCTGCCGTGACGACCAGACCGAACTCGCTCA
CGTGGCCGGAGTTCGCCCGCCAAGCCGTGTCGGCTCTTCTCCTCAACTGG
GCGGAGCAGGACGCGATCTTCGGAGACACGTCGGGAGCACCGTCCCAGTC
CCAGCTCACGTGGCCGGAGTTCGCCCGCCAAGCCGTGTCGGCTCTTCTCC
TCAACTGGGCGGAGCAGGACGCGATCTTCGGAGACACGTCGGGAGCACCG
TCCCAGTCCCAGGCGGCCCAAGGGAGAGCGGCGAGGAAGAAGGTAGGGAA
GGGAGGGAAGATCGACCCGCAGCACCTGTCGCCCGCGTGCGTGTGGCTCG
ATGCTCAGCACGACGCCAAGCACGGAGCAAGGTTCATCGAGAGCATCACA
GGCGGCCCAAGGGAGAGCGGCGAGGAAGAAGGTAGGGAAGGGAGGGAAGA
TCGACCCGCAGCACCTGTCGCCCGCGTGCGTGTGGCTCGATGCTCAGCAC
GACGCCAAGCACGGAGCAAGGTTCATCGAGAGCATCACAGGGAACGCCGA
CGAGCCTCCGCCCAAGAAGACGGAGAGACCGCCGCCCGCGCACAAGAACA
AGAAGGCCCTCGGCCTACTGAGCGAGGGGGTGGAAGTCGGCGGCGACACA
GCAGCGTCGGTGGCCGCTGCTGGCGGCGGCCCCGCGGAGCAGGCAGACCC
GGAAGCCAAACCAGAGCCGGCCGTCGCGCCCCCCCCCTGGGCCGGAGCGG
TGGCGAAAAAACAGGAGCAACAGCCTACGAACGGTGGCATGGGTCGAGGC
GCCGGAACGGTGTGGGGGGTTATGGCTTCGGAAGCGGGAGCAGAAGCAGC
GGCGTCGGCGGCAACGGGGCTGAAAGCGCCACCACCGTCCGAAGCACACG
GGAGGTCGGCGGTCGCGGCTTCGGCTTCGGCTTTGGCTGTGCCGGAAGCC
TCTGGAGTGGGAGACACAGCTACGCCGCCGCCGCTGCTGCCGCCGCCGCC
GCCGCCGCCAGCCGTATCTGCTGAGGAGAGCGTAGGACTGTTGACGCCGG
CACGGACGCTCTCGGGGTCTTCGGCTCGCGTGGCGGCACTGGCAATCGCA
GCGGAAGCAGCAGCAAAGGCGGCCGCCGCTAAGGCCGCTGCTGCGGCTGC
CGCGGAGGCCTTGAAGGCTGCGTCTTCATCGGGCGGGCGCAAGGGGAAGC
TGGACCCGGCGGCGGCGGGCGCGGAAGGGGGAACGCCGACGAGCCTCCGC
CCAAGAAGACGGAGAGACCGCCGCCCGCGCACAAGAACAAGAAGGCCCTC
GGCCTACTGAGCGAGGGGGTGGAAGTCGGCGGCGACACAGCAGCGTCGGT
GGCCGCTGCTGGCGGCGGCCCCGCGGAGCAGGCAGACCCGGAAGCCAAAC
CAGAGCCGGCCGTCGCGCCCCCCCCCTGGGCCGGAGCGGTGGCGAAAAAA
CAGGAGCAACAGCCTACGAACGGTGGCATGGGTCGAGGCGCCGGAACGGT
GTGGGGGGTTATGGCTTCGGAAGCGGGAGCAGAAGCAGCGGCGTCGGCGG
CAACGGGGCTGAAAGCGCCACCACCGTCCGAAGCACACGGGAGGTCGGCG
GTCGCGGCTTCGGCTTCGGCTTTGGCTGTGCCGGAAGCCTCTGGAGTGGG
AGACACAGCTACGCCGCCGCCGCTGCTGCCGCCGCCGCCGCCGCCGCCAG
CCGTATCTGCTGAGGAGAGCGTAGGACTGTTGACGCCGGCACGGACGCTC
TCGGGGTCTTCGGCTCGCGTGGCGGCACTGGCAATCGCAGCGGAAGCAGC
AGCAAAGGCGGCCGCCGCTAAGGCCGCTGCTGCGGCTGCCGCGGAGGCCT
TGAAGGCTGCGTCTTCATCGGGCGGGCGCAAGGGGAAGCTGGACCCGGCG
GCGGCGGGCGCGGAAGGG
back to top