mRNA_L-elsbetiae_contig1817.5238.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1817.5238.1 vs. uniprot
Match: D7G5K6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K6_ECTSI) HSP 1 Score: 530 bits (1365), Expect = 4.620e-165 Identity = 541/1233 (43.88%), Postives = 634/1233 (51.42%), Query Frame = 1
Query: 91 MERVLRAFLFHEELATQDEGASLEEALEHVLWYHPVEAPRPERVKHVGLAQALLSFSDRFEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRVEVVRTSRHCHGFLECEPGVWLVMVLANRRGQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGGESSAGLEPRRGSSEANHPGTIRATITAGNSPKHPRKPTGPSPLAPGGGAAAARGSGEGGDWVDEGALRAAMSRAYETFALMNGTVSDALRAPTALLPTGCASGGSGGXXERGDGGGTVSGFEVLRRLASARKRLRKAKREAQEVRLPKGTASPSNXXXXXXXXXXXQPQKEWSESHAEMVDGEVAALLRASPAERLRETLQAFFAGYLPGAGLSEPHFHLDMGCPQSLPTDLYRRQLGLRIQRRVRKRICSLLRADSSSSRXXXXXXXXXXXXXXXXXXDIDIALTLGAGALMLASMDAEPPVFSPGSSNGGAVGNLRTGGGGGSDGDGRRHDGVAEGGSGPQDGSSGYTPGGGAVAEGSPEDDSESE------PWRTPREQQQRRRQQPGEGIL--LEGAEASLLMGYLSAAAFTAAGEKRTAESAAPVAGSSAARAGLKSGEGVRSTETKGPQK--------TLWAALRSGAASSGHGGXXXXXXXXXXXXXXXXXASL-----AGGPSGLLCCDGTLALCGGGDGSVRRPAGDLGERAIWAPELH-------------PVDRQSTGDPVGTKEXXXXXXXXXXXXXXXXXXXXXXXXXXXSQRQVVAYVRGGLCALVAFRHRDRNGAGPTAGGDRDGECAAPEHSAEGKVVERAGPGRAPQEEAGAGREPK----APASEAPGCTWSQPRLLSLGRAIETSLSEDPDLAVLEDDVRDFYFQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXQLPLVSGSVRTVHHRSSPLPCFAGAGLVHHPFAAENVLSATTAAAVSLQSGPDANGAHADTTSSSSG----GRVSGXXXXXXXXXXXXXXXXXXXXXXXXDGWLIVGRQKKPSFHECGGRGSGREFVALIQALGQKGRPDIGVEDTRRRGLGGEQELAGFDDIHA-----------RFKLHPAARELGIRTSMSKGNRWLIGRRLRRAXXXXXXXXXXXXXXXXXXXCEVVEDEMYATIEAPVLSVGDARAAAGRIFWGIGRDGGTAAGAGDGA---------ERPRAQGTGLGRRRYLR 3603
MER+ RAFLFHE+LATQDEGA+L+EALEHVLWY+P EA RPERVKHVGLAQALL+F DRF XXXXXXXXXXXXXXXXXXXXXXXXXXXX S +VEVVRT +HCHGFLECEPGVWLVMV+ +RR Q Q G SA +PR S A+H + A + + + R P+ P+ A GDWVDE AL AAM AY+T ALM+G VS AL AP AL P G GG G TV G EVLRRLASARKRLRKAK++A ++ S ++E ES + + EVA LLRASPAE LRETL+ FF+ YLPGAGL+EPHFHLDMG PQSLP D YRRQLGLRIQRRVR+RI SLL ++D A+TL GAL+LA D +P + +G T G S +G + + GG D +SG GG E D+ S P T ++ + + QQ L G EA LL+GYL AAA TAA R E + VAG S +LWAA RSG + XXXXXXXXXXXXXXXXX A G GLL DG+LA C + SV R GD G+ AIWAPELH P + ++ T XXXXXX +R+ VAYVRGGLCALVAFR R+R G GG GE A A+G+V G R Q A EP+ A A WS+ +LLSLGRAIETSLSEDPDL VLEDDV DFYFQ Q SG VRTVHH+ SPLPCF+G G+V HP A + + + + +G D+ GA D S SG G V G XXXXXXXXXXXXXXXX + +G + L+ A G++GRPD+GVE RRRG GGEQEL+ D++HA R PAARE+GIRTSMSKGNRW+IGRRL + E+YATIEAPVLSVGDARAAA R+F G+ DG AGDGA +R RA GL RRR+LR
Sbjct: 1 MERIARAFLFHEDLATQDEGATLDEALEHVLWYYPAEASRPERVKHVGLAQALLAFGDRFHHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXESREWPGVP----------SGKVEVVRTRQHCHGFLECEPGVWLVMVMVSRRRQEQQPEDAGNPKASRPSTRSLLRSAVFGRGI--GISPPSATTDPRGHGSRADH--RVDAAVRSPSPAARDRSPSSPAAARSVRNDRAGGXXXXSGDWVDETALHAAMGTAYQTLALMHGPVSSALDAPAALPPPPSGEGVGGG------GDITVPGLEVLRRLASARKRLRKAKKKALDL-AEHAACSGEVGEIGEEGGSVESLRQELLESRVRLEEREVAVLLRASPAEFLRETLEDFFSSYLPGAGLAEPHFHLDMGYPQSLPMDPYRRQLGLRIQRRVRQRIRSLLLGGGID-------------------VEVDFAMTLAGGALLLACKDPQPVAAA-------ILGQNSTAGVNSSTRNGCKEERQTNGG---VDKASGGGTGGKETVENILGRDAASAGSEKQTPGETGGDESRGKPQQXXXXXXXXLSGKEALLLVGYLHAAALTAAETGRAQEGS--VAGPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSLWAAFRSGISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAGGLLRRDGSLASCA--EASVLRYGGDTGDCAIWAPELHYGVAERPGITRDNPRNEKAFAARGSTPPAATXXXXXXSADAGSFTGRDGNSFQRRRRRRAVAYVRGGLCALVAFRERERRCDG--TGGAAGGEEVATGDDAQGEV----GQPRLDQGAAHGSDEPRFSWPADDERAGAGGWSELQLLSLGRAIETSLSEDPDLTVLEDDVGDFYFQ-----LLTAGEDAGGNDARSGSGGHPRRRQQSRRSGPVRTVHHQDSPLPCFSGTGIVRHP-PAPAPAAQLGGSGLPVGAGDDSAGAEDDNRLSVSGSSGEGPVVGRLAADVSSXXXXXXXXXXXXXXXXXXXVCXXXXXXXG-------SAGGDVGPLLDAFGRQGRPDLGVEAMRRRGAGGEQELSVLDEVHACLTRGDGGGTGRSAASPAAREIGIRTSMSKGNRWVIGRRLAGESGGGGGRSR-------------LGHEVYATIEAPVLSVGDARAAASRVFSGVACDG---LAAGDGAVAGRQSAEPDRSRASEKGLERRRFLR 1144
BLAST of mRNA_L-elsbetiae_contig1817.5238.1 vs. uniprot
Match: A0A6H5J820_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J820_9PHAE) HSP 1 Score: 179 bits (455), Expect = 5.240e-46 Identity = 159/356 (44.66%), Postives = 186/356 (52.25%), Query Frame = 1
Query: 2596 LLSLGRAIETSLSEDPDLAVLEDDVRDFYFQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXQLPLVSGSVRTVHHRSSPLPCFAGAGLVHHPFAAENVLSATTAAAVSLQSGPDANGAHADTT----SSSSGGRVSGXXXXXXXXXXXXXXXXXXXXXXXXDGWLIVGRQKKPSFHECGGRGSGREFVALIQALGQKGRPDIGVEDTRRRGLGGEQELAGFDDIHA-----------RFKLHPAARELGIRTSMSKGNRWLIGRRLRRAXXXXXXXXXXXXXXXXXXXCEVVEDEMYATIEAPVLSVGDARAAAGRIFWGIGRDG-----GTAAGAGDGAERPRAQGTGLGRRRYLR 3603
LLSLGRAIETSLSEDPDL VLEDDV DFYFQ Q P +G VR +HH+ SPLPCF+G G+V HP A L + + + G D+ GA D SS G ++G XXXXXXXXXXXXXXXX S +G + L+ A G++GR D+GVE RRRG GGEQEL+ D+IHA R AARE+GIRTSMSKGNRW+IGRRL + E+YATIEAPVLSVGDARAAA R+F G+ DG G AG G +R RA GL RRR+LR
Sbjct: 25 LLSLGRAIETSLSEDPDLTVLEDDVGDFYFQ-----LLTAGEDAGGNAWSGGGVHPRRRQQSPR-TGPVRAIHHQDSPLPCFSGTGIVRHPPAPAAQLGGS---GLPVGVGDDSAGAENDKRLSVWGSSGEGPIAGRLAADVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXGS--------AGGDVGPLMDAFGRQGRADLGVEAMRRRGAGGEQELSVLDEIHACLTRGEGGGTGRSAASSAAREIGIRTSMSKGNRWVIGRRLAGESGSGGRSR--------------LGHELYATIEAPVLSVGDARAAASRVFSGVACDGLPAGDGAVAGQSAGPDRSRASERGLERRRFLR 349
BLAST of mRNA_L-elsbetiae_contig1817.5238.1 vs. uniprot
Match: A0A6H5J5U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5U0_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 3.340e-9 Identity = 91/267 (34.08%), Postives = 119/267 (44.57%), Query Frame = 1
Query: 1294 MGCPQSLPTDLYRRQLGLRIQRRVRKRICSLLRADSSSSRXXXXXXXXXXXXXXXXXXDIDIALTLGAGALMLASMDAEPPVFSPGSSNGGAVGNLRTGGGGGSDGDGRRHDGVAEGGSGPQDGSSGYTPGGGAVAEGSPED----------DSESEPWRTPREQQQRRRQQP--------------GEGILLEGAEASLLMGYLSAAAFTAAGEKRTAESAAPVAGSSAARAGLKS---GEGVRSTETKGPQKTLWAALRSGAASS 2013
MG PQSLP D YR LGLRIQRRVR+RI LL + ++D+A+TL GAL+LA D +P + N N T +G E +GS T GGG V + + E+ + P T ++ + + Q G G +L G EASLL+GYL AAA TAA R E + VAG SAA + GE +E +GP +LWAALRSG +S+
Sbjct: 1 MGYPQSLPMDPYRWHLGLRIQRRVRQRIRFLLLSGGID-------------------VEVDLAVTLAGGALLLACKDQQPVAATILGQNSTTGVNSST------------KNGYKE--EKQTNGSVDKTSGGGTVGKEAVENVLGRDAASAGSEKQTPGETGGDESRGKPHQXXXXXXXXXXXXXXSGGGAVLSGQEASLLVGYLRAAALTAAETGRAQEGS--VAGPSAAAVAATAPSLGE-EDGSEEEGPPMSLWAALRSGISSN 231 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1817.5238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1817.5238.1 >prot_L-elsbetiae_contig1817.5238.1 ID=prot_L-elsbetiae_contig1817.5238.1|Name=mRNA_L-elsbetiae_contig1817.5238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1200bp MILYIVGVYTPRPKEKHTHTFSFAALCAMERVLRAFLFHEELATQDEGASback to top mRNA from alignment at L-elsbetiae_contig1817:4729..16703- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1817.5238.1 ID=mRNA_L-elsbetiae_contig1817.5238.1|Name=mRNA_L-elsbetiae_contig1817.5238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11975bp|location=Sequence derived from alignment at L-elsbetiae_contig1817:4729..16703- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1817:4729..16703- >mRNA_L-elsbetiae_contig1817.5238.1 ID=mRNA_L-elsbetiae_contig1817.5238.1|Name=mRNA_L-elsbetiae_contig1817.5238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7200bp|location=Sequence derived from alignment at L-elsbetiae_contig1817:4729..16703- (Laminarionema elsbetiae ELsaHSoW15)back to top |