mRNA_L-elsbetiae_contig1810.5211.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1810.5211.1
Unique NamemRNA_L-elsbetiae_contig1810.5211.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1810.5211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1810contigL-elsbetiae_contig1810:17342..18245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size420
Cds size420
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1810.5211.1prot_L-elsbetiae_contig1810.5211.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1810 17342..18245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.6830783-CDS-L-elsbetiae_contig1810:17341..173801622815754.6830783-CDS-L-elsbetiae_contig1810:17341..17380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1810 17342..17380 -
1691683081.306703-CDS-L-elsbetiae_contig1810:17341..173801691683081.306703-CDS-L-elsbetiae_contig1810:17341..17380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1810 17342..17380 -
1622815754.6941183-CDS-L-elsbetiae_contig1810:17642..177551622815754.6941183-CDS-L-elsbetiae_contig1810:17642..17755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1810 17643..17755 -
1691683081.315893-CDS-L-elsbetiae_contig1810:17642..177551691683081.315893-CDS-L-elsbetiae_contig1810:17642..17755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1810 17643..17755 -
1622815754.704388-CDS-L-elsbetiae_contig1810:17977..182451622815754.704388-CDS-L-elsbetiae_contig1810:17977..18245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1810 17978..18245 -
1691683081.3279688-CDS-L-elsbetiae_contig1810:17977..182451691683081.3279688-CDS-L-elsbetiae_contig1810:17977..18245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1810 17978..18245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1810.5211.1

>prot_L-elsbetiae_contig1810.5211.1 ID=prot_L-elsbetiae_contig1810.5211.1|Name=mRNA_L-elsbetiae_contig1810.5211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MDPWRVDREKGVAPEVPRVYLPIAPLGPIELPRSGSFGPTSPMPPVGRSD
GEDGGIPRRVERRTATVMPPFFLTPACIERAAKAVWTSVDPAPALEPPQQ
IIIPATSLSAPLAELVNGALTDLPCEEGFPAILAAAFDLP
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mRNA from alignment at L-elsbetiae_contig1810:17342..18245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1810.5211.1 ID=mRNA_L-elsbetiae_contig1810.5211.1|Name=mRNA_L-elsbetiae_contig1810.5211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=904bp|location=Sequence derived from alignment at L-elsbetiae_contig1810:17342..18245- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATCCATGGCGAGTAGACCGAGAGAAAGGCGTAGCGCCGGAAGTCCC
TCGTGTCTACCTTCCAATAGCACCACTCGGGCCTATCGAACTGCCGCGAT
CGGGCAGCTTTGGGCCCACGTCACCTATGCCGCCGGTGGGAAGGAGCGAT
GGCGAAGACGGTGGCATTCCCAGACGCGTAGAGAGGAGAACCGCAACCGT
GATGCCCCCGTTTTTCCTAACGCCAGCGTGTATCGAAAGGGCTGCCAAAG
CTGTCTGGACAAGCGTGGGTGAGAGGAAAATATGCTAGGGTGCTCTCGGA
TTTTCGGCGATTACGCACATTGATCTCCGCAGCGGCAAGCACGTGCACGA
CGATCGATGTCGCTCAAAATTCCGTACACAAGGCCTGTGCATCCATCAAC
AACATGTTAACCGCCATCTTGAACCCAACCGTCAACCTGGCCGAACGGTT
CTGTGCGTGAAATTTTTGATGGGTCTCTTTCGGAGCACAGACCCGGCTCC
CGCGCTCGAGCCTCCGCAGCAAATCATCATCCCGGCTACTTCTCTCTCTG
CCCCCTTGGCGGAGCTGGTGAACGGGGCGCTCACAGACTTGCCCTGCGAA
GAGGTAACGCACGGGACTTCCGTATCCCAATGCAACCTTTTTCTAGGCAT
GCAGCAGCGAAAATAGCCATGGCTTCATCCACCCATCCCGTGTTTCCGCC
GACAAATCGTCACTGAGCAGGCTTGGTGTATCCGGCGTGCGTGTAAGCTA
CATGCATACATACGACAGGCGACCAAACGCACGATCTCATGAAAACCCCA
ACACCGTCATAACTGACTTGTTAACTGACTGGCTGTCTGCGGCGGCGGCT
ACTCGATGTTTGCAGGGATTTCCGGCCATACTGGCAGCCGCGTTTGATCT
CCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1810:17342..18245-

>mRNA_L-elsbetiae_contig1810.5211.1 ID=mRNA_L-elsbetiae_contig1810.5211.1|Name=mRNA_L-elsbetiae_contig1810.5211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig1810:17342..18245- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATCCATGGCGAGTAGACCGAGAGAAAGGCGTAGCGCCGGAAGTCCC
TCGTGTCTACCTTCCAATAGCACCACTCGGGCCTATCGAACTGCCGCGAT
CGGGCAGCTTTGGGCCCACGTCACCTATGCCGCCGGTGGGAAGGAGCGAT
GGCGAAGACGGTGGCATTCCCAGACGCGTAGAGAGGAGAACCGCAACCGT
GATGCCCCCGTTTTTCCTAACGCCAGCGTGTATCGAAAGGGCTGCCAAAG
CTGTCTGGACAAGCGTGGATGGATCCATGGCGAGTAGACCGAGAGAAAGG
CGTAGCGCCGGAAGTCCCTCGTGTCTACCTTCCAATAGCACCACTCGGGC
CTATCGAACTGCCGCGATCGGGCAGCTTTGGGCCCACGTCACCTATGCCG
CCGGTGGGAAGGAGCGATGGCGAAGACGGTGGCATTCCCAGACGCGTAGA
GAGGAGAACCGCAACCGTGATGCCCCCGTTTTTCCTAACGCCAGCGTGTA
TCGAAAGGGCTGCCAAAGCTGTCTGGACAAGCGTGGACCCGGCTCCCGCG
CTCGAGCCTCCGCAGCAAATCATCATCCCGGCTACTTCTCTCTCTGCCCC
CTTGGCGGAGCTGGTGAACGGGGCGCTCACAGACTTGCCCTGCGAAGAGA
CCCGGCTCCCGCGCTCGAGCCTCCGCAGCAAATCATCATCCCGGCTACTT
CTCTCTCTGCCCCCTTGGCGGAGCTGGTGAACGGGGCGCTCACAGACTTG
CCCTGCGAAGAGGGATTTCCGGCCATACTGGCAGCCGCGTTTGATCTCCC
TGGATTTCCGGCCATACTGGCAGCCGCGTTTGATCTCCCT
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