mRNA_L-elsbetiae_contig1810.5210.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1810.5210.1
Unique NamemRNA_L-elsbetiae_contig1810.5210.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1810.5210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1810contigL-elsbetiae_contig1810:16736..17380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size379
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.6351962-CDS-L-elsbetiae_contig1810:16737..168781622815754.6351962-CDS-L-elsbetiae_contig1810:16737..16878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1810 16738..16878 -
1691683081.2861311-CDS-L-elsbetiae_contig1810:16737..168781691683081.2861311-CDS-L-elsbetiae_contig1810:16737..16878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1810 16738..16878 -
1622815754.646762-CDS-L-elsbetiae_contig1810:17146..173801622815754.646762-CDS-L-elsbetiae_contig1810:17146..17380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1810 17147..17380 -
1691683081.2975852-CDS-L-elsbetiae_contig1810:17146..173801691683081.2975852-CDS-L-elsbetiae_contig1810:17146..17380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1810 17147..17380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1810.5210.1prot_L-elsbetiae_contig1810.5210.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1810 16738..17380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1810.5210.1

>prot_L-elsbetiae_contig1810.5210.1 ID=prot_L-elsbetiae_contig1810.5210.1|Name=mRNA_L-elsbetiae_contig1810.5210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
GFPAILAAAFDLPRTCQRCSEPSTTRPVRKCTPPTFTAVRCETGSSCEGF
GEGDPTSLASVLTIFDDAPRLGLISRIQEVLTDVPRSASQSYAPPAEAPY
VPTAPKPVPVPWIKVGVAAGEGEHP
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mRNA from alignment at L-elsbetiae_contig1810:16736..17380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1810.5210.1 ID=mRNA_L-elsbetiae_contig1810.5210.1|Name=mRNA_L-elsbetiae_contig1810.5210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=645bp|location=Sequence derived from alignment at L-elsbetiae_contig1810:16736..17380- (Laminarionema elsbetiae ELsaHSoW15)
GGATTTCCGGCCATACTGGCAGCCGCGTTTGATCTCCCTCGCACGTGCCA
GCGATGCAGTGAGCCATCGACCACAAGGCCCGTCAGAAAATGCACTCCTC
CAACATTCACAGCTGTGCGCTGCGAGACGGGAAGCAGCTGCGAAGGCTTC
GGCGAAGGCGACCCTACGAGCCTTGCCAGTGTTCTCACCATCTTCGATGA
CGCTCCGCGTCTAGGGTTAATATCACGAATACAGGTTTGAGCAGTTGCCG
GGGGGGCGGTAGATGTGCAACGAAAACAGTTAAATAGTGGATGCGCCGGA
CCCGAAATGAAAATCGCATGAGAGGAAGATCGGGTTCTGGCCGTACTCAC
CAGCAGCTCGTCCGTCCTTACACTTAGCAAGACAACATGCGCCAGCTAGC
CATCGTAGGGGCGGCGCCTTTGCATATCATGTTATGCTGCATCTCTCCCC
AACGTTGACCCTGGGACAAAACACGAATCGTGTGCCTTTCGAAATTTGAC
AGGAAGTGTTGACAGATGTTCCGCGAAGTGCCTCTCAGTCGTATGCTCCA
CCCGCGGAGGCACCATACGTTCCCACGGCGCCGAAGCCTGTGCCCGTCCC
ATGGATAAAAGTGGGCGTGGCTGCAGGGGAGGGCGAACACCCGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1810:16736..17380-

>mRNA_L-elsbetiae_contig1810.5210.1 ID=mRNA_L-elsbetiae_contig1810.5210.1|Name=mRNA_L-elsbetiae_contig1810.5210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig1810:16736..17380- (Laminarionema elsbetiae ELsaHSoW15)
GGATTTCCGGCCATACTGGCAGCCGCGTTTGATCTCCCTCGCACGTGCCA
GCGATGCAGTGAGCCATCGACCACAAGGCCCGTCAGAAAATGCACTCCTC
CAACATTCACAGCTGTGCGCTGCGAGACGGGAAGCAGCTGCGAAGGCTTC
GGCGAAGGCGACCCTACGAGCCTTGCCAGTGTTCTCACCATCTTCGATGA
CGCTCCGCGTCTAGGGTTAATATCACGAATACAGGGATTTCCGGCCATAC
TGGCAGCCGCGTTTGATCTCCCTCGCACGTGCCAGCGATGCAGTGAGCCA
TCGACCACAAGGCCCGTCAGAAAATGCACTCCTCCAACATTCACAGCTGT
GCGCTGCGAGACGGGAAGCAGCTGCGAAGGCTTCGGCGAAGGCGACCCTA
CGAGCCTTGCCAGTGTTCTCACCATCTTCGATGACGCTCCGCGTCTAGGG
TTAATATCACGAATACAGGAAGTGTTGACAGATGTTCCGCGAAGTGCCTC
TCAGTCGTATGCTCCACCCGCGGAGGCACCATACGTTCCCACGGCGCCGA
AGCCTGTGCCCGTCCCATGGATAAAAGTGGGCGTGGCTGCAGGGGAGGGC
GAACACCCGGAAGTGTTGACAGATGTTCCGCGAAGTGCCTCTCAGTCGTA
TGCTCCACCCGCGGAGGCACCATACGTTCCCACGGCGCCGAAGCCTGTGC
CCGTCCCATGGATAAAAGTGGGCGTGGCTGCAGGGGAGGGCGAACACCCG
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