mRNA_L-elsbetiae_contig1810.5209.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1810.5209.1
Unique NamemRNA_L-elsbetiae_contig1810.5209.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1810.5209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1810contigL-elsbetiae_contig1810:15738..16659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.5808322-CDS-L-elsbetiae_contig1810:15737..159541622815754.5808322-CDS-L-elsbetiae_contig1810:15737..15954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1810 15738..15954 -
1691683081.2633557-CDS-L-elsbetiae_contig1810:15737..159541691683081.2633557-CDS-L-elsbetiae_contig1810:15737..15954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1810 15738..15954 -
1622815754.596187-CDS-L-elsbetiae_contig1810:16600..166591622815754.596187-CDS-L-elsbetiae_contig1810:16600..16659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1810 16601..16659 -
1691683081.2747574-CDS-L-elsbetiae_contig1810:16600..166591691683081.2747574-CDS-L-elsbetiae_contig1810:16600..16659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1810 16601..16659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1810.5209.1prot_L-elsbetiae_contig1810.5209.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1810 15738..16659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1810.5209.1

>prot_L-elsbetiae_contig1810.5209.1 ID=prot_L-elsbetiae_contig1810.5209.1|Name=mRNA_L-elsbetiae_contig1810.5209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
CVLAVTPPGSITRESVAQRRPSFRRGGGVCTKSSGTSAFDSSFPFAENGL
RLKDVPVWRDASSDATDAHMPPPSPGPVWRDSDELLRHLNKQ
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mRNA from alignment at L-elsbetiae_contig1810:15738..16659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1810.5209.1 ID=mRNA_L-elsbetiae_contig1810.5209.1|Name=mRNA_L-elsbetiae_contig1810.5209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=922bp|location=Sequence derived from alignment at L-elsbetiae_contig1810:15738..16659- (Laminarionema elsbetiae ELsaHSoW15)
TGCGTTCTAGCAGTCACGCCACCAGGGTCGATCACGCGAGAATCGGTTGC
GCAGCGGAGGTGGGTGGACGTCTAGTTTGGAAGCGATGGCAGGTTAAATA
TCTGTGCGTGCGCAGTCTGGCGTTTTAGGTTGGTGAAGACGGTGTTAGTC
AACACTTTAGTGTCGTCAACGCCAATGAGGGCACAGGCTACCTTCCGTAG
TTGATGGCCCAGGTCGTCGCAGTATTCACCCACTGCCAGGGGCGGCTAGT
TTCTTTCCGTTATGTTCAAGGCAAAGGAGAGATAAGTCACACGCGAAAGG
GCCGACGAGAGGGGACCCGAGGAGCTCGGGTCCCCTTGCCTTAGCACGTT
ACACGGTTGGAAGAGCCAGGTCTCTTCGGGATTTCTTGCTAACCCAACGG
GTCGGTAAGGTATCTTTTATAAGACCGTATCTTCCTACGCTCTGTAGTGC
ACTTAGTCATCAATCTTACACCTGTCATCCACATTAGGGCTTTCTTTTTT
TGATCAAACAAATGATGCGGGAGAACACATTTCGTCGAGAATCCTTGGAA
GCAGATTATCTCCTCGGTTCCATGCGTCTTGGTATGCGTGACCTACCAAT
CCACCTTGTACGCCCACCCTTTCAAAAGCGCGGACTCTCTCTCCTCCCTC
GATAGCCCACTTCCACTGCCGTCGCCTCCGCCGCCGCCGCCGCTACGCAA
CCCAGACCCAGTTTTCGCAGAGGGGGAGGTGTGTGTACAAAATCCAGTGG
CACTTCTGCATTCGACAGTAGTTTCCCGTTTGCTGAGAACGGTCTCCGCC
TTAAGGACGTGCCGGTGTGGCGCGATGCGTCGAGCGATGCCACTGACGCA
CACATGCCACCGCCATCGCCTGGGCCGGTGTGGCGCGACTCGGATGAGCT
ATTGAGACACCTTAACAAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1810:15738..16659-

>mRNA_L-elsbetiae_contig1810.5209.1 ID=mRNA_L-elsbetiae_contig1810.5209.1|Name=mRNA_L-elsbetiae_contig1810.5209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig1810:15738..16659- (Laminarionema elsbetiae ELsaHSoW15)
TGCGTTCTAGCAGTCACGCCACCAGGGTCGATCACGCGAGAATCGGTTGC
GCAGCGGAGTGCGTTCTAGCAGTCACGCCACCAGGGTCGATCACGCGAGA
ATCGGTTGCGCAGCGGAGACCCAGTTTTCGCAGAGGGGGAGGTGTGTGTA
CAAAATCCAGTGGCACTTCTGCATTCGACAGTAGTTTCCCGTTTGCTGAG
AACGGTCTCCGCCTTAAGGACGTGCCGGTGTGGCGCGATGCGTCGAGCGA
TGCCACTGACGCACACATGCCACCGCCATCGCCTGGGCCGGTGTGGCGCG
ACTCGGATGAGCTATTGAGACACCTTAACAAGCAGACCCAGTTTTCGCAG
AGGGGGAGGTGTGTGTACAAAATCCAGTGGCACTTCTGCATTCGACAGTA
GTTTCCCGTTTGCTGAGAACGGTCTCCGCCTTAAGGACGTGCCGGTGTGG
CGCGATGCGTCGAGCGATGCCACTGACGCACACATGCCACCGCCATCGCC
TGGGCCGGTGTGGCGCGACTCGGATGAGCTATTGAGACACCTTAACAAGC
AG
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