mRNA_L-elsbetiae_contig1809.5201.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1809.5201.1
Unique NamemRNA_L-elsbetiae_contig1809.5201.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1809.5201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1809contigL-elsbetiae_contig1809:7475..8876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size829
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1809.5201.1prot_L-elsbetiae_contig1809.5201.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1809 7588..8601 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.1393123-UTR-L-elsbetiae_contig1809:7474..75871622815754.1393123-UTR-L-elsbetiae_contig1809:7474..7587Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1809 7475..7587 +
1691683081.0064027-UTR-L-elsbetiae_contig1809:7474..75871691683081.0064027-UTR-L-elsbetiae_contig1809:7474..7587Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1809 7475..7587 +
1622815754.178381-UTR-L-elsbetiae_contig1809:8601..88761622815754.178381-UTR-L-elsbetiae_contig1809:8601..8876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1809 8602..8876 +
1691683081.0448315-UTR-L-elsbetiae_contig1809:8601..88761691683081.0448315-UTR-L-elsbetiae_contig1809:8601..8876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1809 8602..8876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.1501935-CDS-L-elsbetiae_contig1809:7587..78711622815754.1501935-CDS-L-elsbetiae_contig1809:7587..7871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1809 7588..7871 +
1691683081.021131-CDS-L-elsbetiae_contig1809:7587..78711691683081.021131-CDS-L-elsbetiae_contig1809:7587..7871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1809 7588..7871 +
1622815754.1614747-CDS-L-elsbetiae_contig1809:8444..86011622815754.1614747-CDS-L-elsbetiae_contig1809:8444..8601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1809 8445..8601 +
1691683081.0315566-CDS-L-elsbetiae_contig1809:8444..86011691683081.0315566-CDS-L-elsbetiae_contig1809:8444..8601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1809 8445..8601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1809.5201.1

>prot_L-elsbetiae_contig1809.5201.1 ID=prot_L-elsbetiae_contig1809.5201.1|Name=mRNA_L-elsbetiae_contig1809.5201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
MVRRAVLAPVGGGPARFICLGRQRFPPAEAWRPRSELLALRKYAQFERRE
SALTVTGALDSDRSDEDESRALSEPDAVVKTEGMEVPHGTYGSCRRSRGR
EEKEEEKGRGGAGARFPKSQKQESLCTTSTIGRKTAFVNAKLYRLD*
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mRNA from alignment at L-elsbetiae_contig1809:7475..8876+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1809.5201.1 ID=mRNA_L-elsbetiae_contig1809.5201.1|Name=mRNA_L-elsbetiae_contig1809.5201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1402bp|location=Sequence derived from alignment at L-elsbetiae_contig1809:7475..8876+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGCACGCAGAGCAAGGCATGTTGCTTCTCTTCTTTTCTGAGCGGCGTC GATCTAGCGGCGACGGCAATAAGAGTGACAGGCCTGAGAGTGTTGGCCGG GGAGCAAGAGGGGATGGTACGGCGCGCCGTGCTAGCTCCGGTGGGAGGAG GACCAGCCCGTTTCATTTGCCTGGGTCGGCAGAGATTCCCTCCAGCAGAA GCATGGAGACCAAGAAGCGAGCTGCTGGCTTTGAGGAAATACGCCCAGTT CGAGCGAAGAGAGAGCGCGTTGACAGTGACAGGCGCGTTGGACAGTGACA GGAGTGACGAAGACGAATCGAGGGCGCTGTCCGAGCCAGATGCTGTGGTG AAGACAGAGGGCATGGAGGTGCCCCATGGAACCTACGGGAGCTGCAGGTG CGTCTCAAGTCTTACACTCCTCGGCATCGTTTATTTCCCGTGGTGGGCAC TTACTTGAAGTGGGTAGAGAGGCGATTGAACGGGTGGAAATAGGAGCCAT AATAGCTAATCGGTGAACAAGGTGCGGCAGTGCGGGCTCGGTTTCGTACA TACCTCTATATCGAACTGTTGCTGTTTGTTCAAGGCACATCGAGTATAAG GTACCATGTGGTACCATGTACACGGCAGGACTGATTGTTTGTTGCCAGAT GGCGGTCACTGTAGTGCACCAGTGCATTTTGTCAGGAAGACCCTCGTTCG TCCACGTGCGCACCAAAGCTTGTCGCGTCTGGTGTTCATTTTCGGCATGC TCTATTCTCTGCTGCTAGAGTGGAATCCGCTCAACCTAGTCCTGCTCGGA AACAACACGACTACTTGGTACACGCGCCATCGGTTTCCCAGAGGGGTTTC AGGCCCTTAGTGTCCCTGAAGTTTTCGTTCGCCAGTAGCGCTTACAGAGG CCGCTTCCGCATGCTCGCCTATTTCCCGGATGTCCTTCCTCTTCATCGCG CTCCCATTCGATCATCCCAGGCGGAGCCGAGGTAGAGAAGAGAAAGAAGA GGAGAAAGGCCGCGGGGGGGCAGGGGCAAGGTTCCCGAAATCACAGAAGC AGGAGTCGCTATGCACAACCAGCACAATTGGGAGGAAGACTGCATTCGTT AACGCAAAACTTTATAGATTAGATTAGATCGCAGGAGTAAAGCGGGGAAA TAGCAGCAGCAGCAGCAGCAGCAGCCTGGTGTAGGTCTGGCGGGTCGTGG TGAGATGGGTGCAGACGGCTGGCTGCAAGAGCGAGACAGTTGCTGTCGCA GCGCACGATGCTTGATGATTCTGTTGCTGCGTGCGTGTTGTTTTTGTCAA TGAAGTGGGTTGTCTTTGACGGCAAGTTGACAGCGGTTGTTTCGTGGTGC CACCGTCGTTTGTTTGTGGCAGGTTTACTTTCGTGTCTTTGCTCTCGTCG GG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1809:7475..8876+

>mRNA_L-elsbetiae_contig1809.5201.1 ID=mRNA_L-elsbetiae_contig1809.5201.1|Name=mRNA_L-elsbetiae_contig1809.5201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig1809:7475..8876+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTACGGCGCGCCGTGCTAGCTCCGGTGGGAGGAGGACCAGCCCGTTT
CATTTGCCTGGGTCGGCAGAGATTCCCTCCAGCAGAAGCATGGAGACCAA
GAAGCGAGCTGCTGGCTTTGAGGAAATACGCCCAGTTCGAGCGAAGAGAG
AGCGCGTTGACAGTGACAGGCGCGTTGGACAGTGACAGGAGTGACGAAGA
CGAATCGAGGGCGCTGTCCGAGCCAGATGCTGTGGTGAAGACAGAGGGCA
TGGAGGTGCCCCATGGAACCTACGGGAGCTGCAGATGGTACGGCGCGCCG
TGCTAGCTCCGGTGGGAGGAGGACCAGCCCGTTTCATTTGCCTGGGTCGG
CAGAGATTCCCTCCAGCAGAAGCATGGAGACCAAGAAGCGAGCTGCTGGC
TTTGAGGAAATACGCCCAGTTCGAGCGAAGAGAGAGCGCGTTGACAGTGA
CAGGCGCGTTGGACAGTGACAGGAGTGACGAAGACGAATCGAGGGCGCTG
TCCGAGCCAGATGCTGTGGTGAAGACAGAGGGCATGGAGGTGCCCCATGG
AACCTACGGGAGCTGCAGGCGGAGCCGAGGTAGAGAAGAGAAAGAAGAGG
AGAAAGGCCGCGGGGGGGCAGGGGCAAGGTTCCCGAAATCACAGAAGCAG
GAGTCGCTATGCACAACCAGCACAATTGGGAGGAAGACTGCATTCGTTAA
CGCAAAACTTTATAGATTAGATTAGGCGGAGCCGAGGTAGAGAAGAGAAA
GAAGAGGAGAAAGGCCGCGGGGGGGCAGGGGCAAGGTTCCCGAAATCACA
GAAGCAGGAGTCGCTATGCACAACCAGCACAATTGGGAGGAAGACTGCAT
TCGTTAACGCAAAACTTTATAGATTAGATTAG
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