mRNA_L-elsbetiae_contig18086.5200.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18086.5200.1
Unique NamemRNA_L-elsbetiae_contig18086.5200.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18086.5200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18086contigL-elsbetiae_contig18086:2094..3108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1017
Cds size525
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.0592349-UTR-L-elsbetiae_contig18086:2093..25831622815754.0592349-UTR-L-elsbetiae_contig18086:2093..2583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18086 2094..2583 +
1691683080.9699194-UTR-L-elsbetiae_contig18086:2093..25831691683080.9699194-UTR-L-elsbetiae_contig18086:2093..2583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18086 2094..2583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.070439-CDS-L-elsbetiae_contig18086:2583..31081622815754.070439-CDS-L-elsbetiae_contig18086:2583..3108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18086 2584..3108 +
1691683080.9815807-CDS-L-elsbetiae_contig18086:2583..31081691683080.9815807-CDS-L-elsbetiae_contig18086:2583..3108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18086 2584..3108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18086.5200.1prot_L-elsbetiae_contig18086.5200.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18086 2584..3108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18086.5200.1

>prot_L-elsbetiae_contig18086.5200.1 ID=prot_L-elsbetiae_contig18086.5200.1|Name=mRNA_L-elsbetiae_contig18086.5200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=175bp
MHISPSSAAGRCVYPAVIMPLGPIDIDPPPKNTRADHGSLAAESKDGPTN
ARRANRPRPKHARVPGKTVPSSSTHDSANNYFTGRATLRKHINTESAKIL
QRPSKLRNTSTPIPARAFPVSPPLYFMLPTLPQPRHWTDHPHVRRPHQLI
LLVPRHSDRHLLAEGDIFCLGHQPT
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mRNA from alignment at L-elsbetiae_contig18086:2094..3108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18086.5200.1 ID=mRNA_L-elsbetiae_contig18086.5200.1|Name=mRNA_L-elsbetiae_contig18086.5200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1015bp|location=Sequence derived from alignment at L-elsbetiae_contig18086:2094..3108+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCGACCCCCCGGTCCCCATTTTCAATCGAGATCAAACCAATAGGTGGA
TGCAGTGGCTGAGAAAGGAGGCAAACTCTTGAATCCTACCCAGCGAGATA
CTAATATTCCATTTTCACACCTCACCTCGCGATGTATTAAGTACCCCCGC
GCCACAAAAGAGCCGCCACGAAAAAATGAACTAGCTAGTAACAGGACGCT
ATGGGAGCTCTTTTCCACCCCCCATGCACCGCACTGCACTGCTCGGCCGC
CCGGCGACTACCAAACACTTGCCCGAACTCTTTCCAAAACCCGTGTGAAG
CCGCCCAAAAAACAAAAAAACTGCCGTGCTCTCTCTCTCTCTCTCTCTCG
CCCAATAGCCGCAATACTAAGCGGAGCGGTTTGAAGGAACGGGAGTACAC
ACGCCGGTAAGGGAAAGCCCAGCCCTACACACGAGTTTTCACTCGCCCAC
TTGGCGTCGGGCGTACTCATGTACCCTCAGCGCGCGATTGATGCACATCT
CTCCTTCGTCAGCCGCCGGCCGGTGCGTCTACCCTGCCGTCATCATGCCG
CTCGGCCCGATCGACATCGACCCGCCACCAAAAAACACTCGCGCTGACCA
CGGGTCATTAGCAGCAGAGAGCAAAGATGGCCCAACCAACGCCCGCCGGG
CAAACCGACCGCGACCAAAGCACGCACGCGTCCCAGGAAAAACAGTCCCC
TCTTCTTCCACCCACGATTCAGCCAACAATTACTTCACCGGCCGAGCAAC
TTTGCGCAAACACATCAACACCGAATCAGCCAAAATACTTCAACGGCCGA
GCAAGTTGCGCAACACATCCACACCGATCCCGGCCCGGGCGTTCCCGGTC
TCCCCGCCGTTGTATTTCATGCTGCCGACTCTTCCGCAGCCGCGCCACTG
GACAGACCACCCACACGTCCGGCGCCCCCACCAACTCATCTTACTGGTAC
CAAGGCACAGCGACCGCCACCTCCTGGCCGAAGGGGATATTTTCTGCCTA
GGGCACCAACCAACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18086:2094..3108+

>mRNA_L-elsbetiae_contig18086.5200.1 ID=mRNA_L-elsbetiae_contig18086.5200.1|Name=mRNA_L-elsbetiae_contig18086.5200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig18086:2094..3108+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACATCTCTCCTTCGTCAGCCGCCGGCCGGTGCGTCTACCCTGCCGT
CATCATGCCGCTCGGCCCGATCGACATCGACCCGCCACCAAAAAACACTC
GCGCTGACCACGGGTCATTAGCAGCAGAGAGCAAAGATGGCCCAACCAAC
GCCCGCCGGGCAAACCGACCGCGACCAAAGCACGCACGCGTCCCAGGAAA
AACAGTCCCCTCTTCTTCCACCCACGATTCAGCCAACAATTACTTCACCG
GCCGAGCAACTTTGCGCAAACACATCAACACCGAATCAGCCAAAATACTT
CAACGGCCGAGCAAGTTGCGCAACACATCCACACCGATCCCGGCCCGGGC
GTTCCCGGTCTCCCCGCCGTTGTATTTCATGCTGCCGACTCTTCCGCAGC
CGCGCCACTGGACAGACCACCCACACGTCCGGCGCCCCCACCAACTCATC
TTACTGGTACCAAGGCACAGCGACCGCCACCTCCTGGCCGAAGGGGATAT
TTTCTGCCTAGGGCACCAACCAACAATGCACATCTCTCCTTCGTCAGCCG
CCGGCCGGTGCGTCTACCCTGCCGTCATCATGCCGCTCGGCCCGATCGAC
ATCGACCCGCCACCAAAAAACACTCGCGCTGACCACGGGTCATTAGCAGC
AGAGAGCAAAGATGGCCCAACCAACGCCCGCCGGGCAAACCGACCGCGAC
CAAAGCACGCACGCGTCCCAGGAAAAACAGTCCCCTCTTCTTCCACCCAC
GATTCAGCCAACAATTACTTCACCGGCCGAGCAACTTTGCGCAAACACAT
CAACACCGAATCAGCCAAAATACTTCAACGGCCGAGCAAGTTGCGCAACA
CATCCACACCGATCCCGGCCCGGGCGTTCCCGGTCTCCCCGCCGTTGTAT
TTCATGCTGCCGACTCTTCCGCAGCCGCGCCACTGGACAGACCACCCACA
CGTCCGGCGCCCCCACCAACTCATCTTACTGGTACCAAGGCACAGCGACC
GCCACCTCCTGGCCGAAGGGGATATTTTCTGCCTAGGGCACCAACCAACA
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