mRNA_L-elsbetiae_contig18086.5199.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18086.5199.1
Unique NamemRNA_L-elsbetiae_contig18086.5199.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18086.5199.1 vs. uniprot
Match: D8LQY6_ECTSI (Ap4A phosphorylase II n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY6_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.710e-19
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 1
Query:    4 SSLPPYNAVLTTRWLMVVPRSRREWGGLDVNGMGFLGALLVREREKAG 147
            S+LPPYNAVLT RWLM+VPRSRREWGG+DVNGMGFLGALLVR++  AG
Sbjct:  432 STLPPYNAVLTPRWLMLVPRSRREWGGIDVNGMGFLGALLVRDKAFAG 479          
BLAST of mRNA_L-elsbetiae_contig18086.5199.1 vs. uniprot
Match: A0A6H5L694_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L694_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.850e-19
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 1
Query:    4 SSLPPYNAVLTTRWLMVVPRSRREWGGLDVNGMGFLGALLVREREKAG 147
            S+LPPYNAVLT RWLM+VPRSRREWGG+DVNGMGFLGALLVR++  AG
Sbjct:  590 STLPPYNAVLTPRWLMLVPRSRREWGGIDVNGMGFLGALLVRDKAFAG 637          
BLAST of mRNA_L-elsbetiae_contig18086.5199.1 vs. uniprot
Match: A0A3M1F3S4_9CHLR (Phosphorylase (Fragment) n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1F3S4_9CHLR)

HSP 1 Score: 59.3 bits (142), Expect = 2.310e-10
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    1 GSSLPPYNAVLTTRWLMVVPRSRREWGGLDVNGMGFLGALLVREREK 141
            G  LPPYN +LT RW+ + PRSR  +  + +NG+GF G+  VR+ E+
Sbjct:    3 GQILPPYNLLLTRRWMFLAPRSRSSYASISINGLGFAGSFFVRDEEQ 49          
BLAST of mRNA_L-elsbetiae_contig18086.5199.1 vs. uniprot
Match: A0A836C9Y6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Y6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.300e-8
Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 GSSLPPYNAVLTTRWLMVVPRSRREWGGLDVNGMGFLGALLVREREKAGTA 153
             ++L P+N +LTTRW++VVPR+R    G++VNG+GF+G+LLV      G A
Sbjct: 1466 AAALAPHNVLLTTRWMLVVPRARAGCAGVNVNGLGFMGSLLVHADGDGGGA 1516          
BLAST of mRNA_L-elsbetiae_contig18086.5199.1 vs. uniprot
Match: A0A7V7SYK7_9PROT (Phosphorylase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7V7SYK7_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 4.030e-8
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   16 PYNAVLTTRWLMVVPRSRREWGGLDVNGMGFLGALLVREREK 141
            PYN ++TT W++++PR R  W GL +N + F+GALLVR  E+
Sbjct:  242 PYNLLVTTHWMVLIPRIRECWNGLSINALAFIGALLVRNEEQ 283          
BLAST of mRNA_L-elsbetiae_contig18086.5199.1 vs. uniprot
Match: A0A3A8NBY7_9DELT (ATP adenylyltransferase (Fragment) n=1 Tax=Corallococcus llansteffanensis TaxID=2316731 RepID=A0A3A8NBY7_9DELT)

HSP 1 Score: 53.5 bits (127), Expect = 4.420e-8
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    4 SSLPPYNAVLTTRWLMVVPRSRREWGGLDVNGMGFLGALLVREREK 141
            +S  PYN + T  W+M+VPRSR E  G++VN +GF G+LLVR  E+
Sbjct:    9 ASRVPYNLLATREWMMLVPRSRAEHLGVNVNALGFAGSLLVRTPEQ 54          
BLAST of mRNA_L-elsbetiae_contig18086.5199.1 vs. uniprot
Match: A0A3A8HU35_9DELT (ATP adenylyltransferase n=1 Tax=Corallococcus terminator TaxID=2316733 RepID=A0A3A8HU35_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 1.000e-7
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   16 PYNAVLTTRWLMVVPRSRREWGGLDVNGMGFLGALLVREREKAGT 150
            PYN ++T  W+M+VPRSR E  G++VNG+GF G+LLVR  E+  T
Sbjct:  225 PYNLLVTRDWMMLVPRSRAEHLGVNVNGLGFAGSLLVRTPEQFDT 269          
BLAST of mRNA_L-elsbetiae_contig18086.5199.1 vs. uniprot
Match: A0A3A8JY63_9DELT (ATP adenylyltransferase (Fragment) n=4 Tax=Corallococcus TaxID=83461 RepID=A0A3A8JY63_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 1.020e-7
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    4 SSLPPYNAVLTTRWLMVVPRSRREWGGLDVNGMGFLGALLVREREK 141
            +S  PYN + T  W+M+VPRSR E  G++VN +GF G+LLVR  E+
Sbjct:   30 ASRAPYNLLATRDWMMLVPRSRAEHLGVNVNALGFAGSLLVRTPEQ 75          
BLAST of mRNA_L-elsbetiae_contig18086.5199.1 vs. uniprot
Match: A0A8J9RIR8_9CHLO (Probable diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase 2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RIR8_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 1.510e-7
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   19 YNAVLTTRWLMVVPRSRREWGGLDVNGMGFLGALLVREREKAGTADTE 162
            YN VLT+ ++M+VPRSR  +G + VN MGF G++LVR RE+     TE
Sbjct:  110 YNMVLTSNFMMLVPRSRETYGPVAVNSMGFAGSMLVRSREELDFIHTE 157          
BLAST of mRNA_L-elsbetiae_contig18086.5199.1 vs. uniprot
Match: A0A507DH94_9FUNG (Uncharacterized protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DH94_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 2.040e-7
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   10 LPP-YNAVLTTRWLMVVPRSRREWGGLDVNGMGFLGALLVRERE 138
            LPP YN VLTTRW+++VPR    W G+ VN +GF G + ++++E
Sbjct:  250 LPPSYNLVLTTRWMLIVPRRMEMWNGISVNSVGFAGMVFLKKQE 293          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18086.5199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQY6_ECTSI1.710e-1983.33Ap4A phosphorylase II n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5L694_9PHAE1.850e-1983.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3M1F3S4_9CHLR2.310e-1046.81Phosphorylase (Fragment) n=1 Tax=Caldilineae bacte... [more]
A0A836C9Y6_9STRA1.300e-849.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7V7SYK7_9PROT4.030e-850.00Phosphorylase n=1 Tax=Proteobacteria bacterium Tax... [more]
A0A3A8NBY7_9DELT4.420e-852.17ATP adenylyltransferase (Fragment) n=1 Tax=Corallo... [more]
A0A3A8HU35_9DELT1.000e-755.56ATP adenylyltransferase n=1 Tax=Corallococcus term... [more]
A0A3A8JY63_9DELT1.020e-752.17ATP adenylyltransferase (Fragment) n=4 Tax=Corallo... [more]
A0A8J9RIR8_9CHLO1.510e-752.08Probable diadenosine 5',5'''-P1,P4-tetraphosphate ... [more]
A0A507DH94_9FUNG2.040e-750.00Uncharacterized protein n=2 Tax=Synchytrium endobi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18086contigL-elsbetiae_contig18086:163..327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionATP adenylyltransferase, C-terminal
Ec32 orthologEc-07_002120.2
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.1073966-CDS-L-elsbetiae_contig18086:162..3271622815754.1073966-CDS-L-elsbetiae_contig18086:162..327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18086 163..327 +
1691683080.9966567-CDS-L-elsbetiae_contig18086:162..3271691683080.9966567-CDS-L-elsbetiae_contig18086:162..327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18086 163..327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18086.5199.1prot_L-elsbetiae_contig18086.5199.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18086 163..327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18086.5199.1

>prot_L-elsbetiae_contig18086.5199.1 ID=prot_L-elsbetiae_contig18086.5199.1|Name=mRNA_L-elsbetiae_contig18086.5199.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
GSSLPPYNAVLTTRWLMVVPRSRREWGGLDVNGMGFLGALLVREREKAGT
ADTEG
back to top

mRNA from alignment at L-elsbetiae_contig18086:163..327+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18086.5199.1 ID=mRNA_L-elsbetiae_contig18086.5199.1|Name=mRNA_L-elsbetiae_contig18086.5199.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig18086:163..327+ (Laminarionema elsbetiae ELsaHSoW15)
GGATCGTCCCTACCGCCTTACAACGCCGTTCTCACCACGCGCTGGCTGAT GGTGGTTCCTCGGTCTCGACGAGAGTGGGGCGGCCTCGACGTGAACGGTA TGGGCTTCCTCGGGGCACTGCTCGTCCGCGAGAGGGAGAAGGCTGGCACC GCAGACACGGAGGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18086:163..327+

>mRNA_L-elsbetiae_contig18086.5199.1 ID=mRNA_L-elsbetiae_contig18086.5199.1|Name=mRNA_L-elsbetiae_contig18086.5199.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig18086:163..327+ (Laminarionema elsbetiae ELsaHSoW15)
GGATCGTCCCTACCGCCTTACAACGCCGTTCTCACCACGCGCTGGCTGAT
GGTGGTTCCTCGGTCTCGACGAGAGTGGGGCGGCCTCGACGTGAACGGTA
TGGGCTTCCTCGGGGCACTGCTCGTCCGCGAGAGGGAGAAGGCTGGCACC
GCAGACACGGAGGGGGGATCGTCCCTACCGCCTTACAACGCCGTTCTCAC
CACGCGCTGGCTGATGGTGGTTCCTCGGTCTCGACGAGAGTGGGGCGGCC
TCGACGTGAACGGTATGGGCTTCCTCGGGGCACTGCTCGTCCGCGAGAGG
GAGAAGGCTGGCACCGCAGACACGGAGGGG
back to top