mRNA_L-elsbetiae_contig18080.5198.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18080.5198.1
Unique NamemRNA_L-elsbetiae_contig18080.5198.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18080.5198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18080contigL-elsbetiae_contig18080:2403..2937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size536
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.0166748-CDS-L-elsbetiae_contig18080:2402..27801622815754.0166748-CDS-L-elsbetiae_contig18080:2402..2780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18080 2403..2780 +
1691683080.94838-CDS-L-elsbetiae_contig18080:2402..27801691683080.94838-CDS-L-elsbetiae_contig18080:2402..2780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18080 2403..2780 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.0304496-UTR-L-elsbetiae_contig18080:2780..29371622815754.0304496-UTR-L-elsbetiae_contig18080:2780..2937Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18080 2781..2937 +
1691683080.9587388-UTR-L-elsbetiae_contig18080:2780..29371691683080.9587388-UTR-L-elsbetiae_contig18080:2780..2937Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18080 2781..2937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18080.5198.1prot_L-elsbetiae_contig18080.5198.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18080 2403..2780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18080.5198.1

>prot_L-elsbetiae_contig18080.5198.1 ID=prot_L-elsbetiae_contig18080.5198.1|Name=mRNA_L-elsbetiae_contig18080.5198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
HQNNLFRRRSKVVQQPDYSGNTDTHTDCSPSCSQIAAKLSKRGLHATGPH
KDRFVPICSGCTLCDKGSEPTASSARITQTFPECGRVSVRNRHKPLLIGV
SDPLGTGLWTGASTEDITVSAYYDM*
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mRNA from alignment at L-elsbetiae_contig18080:2403..2937+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18080.5198.1 ID=mRNA_L-elsbetiae_contig18080.5198.1|Name=mRNA_L-elsbetiae_contig18080.5198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=535bp|location=Sequence derived from alignment at L-elsbetiae_contig18080:2403..2937+ (Laminarionema elsbetiae ELsaHSoW15)
CACCAAAACAACCTCTTCCGACGACGGTCGAAAGTGGTGCAACAGCCCGA
CTACTCCGGAAACACGGACACCCACACCGATTGCTCGCCCTCCTGCTCAC
AGATCGCTGCTAAACTTTCAAAACGTGGGCTTCATGCTACTGGACCCCAC
AAAGACAGATTTGTTCCGATTTGCTCCGGGTGCACTCTGTGTGACAAAGG
CAGCGAACCAACGGCCAGCTCGGCTCGAATTACGCAAACCTTTCCCGAGT
GCGGCCGGGTTTCAGTGCGAAACAGGCATAAACCACTTCTCATCGGCGTT
TCTGATCCTTTAGGAACTGGCCTCTGGACCGGGGCATCCACAGAGGATAT
TACGGTATCTGCATACTATGATATGTGACAGTGAACCTGCCGAGTACACA
CGAGCGTACCTTCGTCTCACCGTGCATTCGTGACAAAAACTTTGCCACAT
CGGCGTGTACGACTAGCTCCAAACCGCTCTGGGAACGAGATTGCGAAGTG
TTCCTCTCTCGATAAACGTCTTGGGACACATAAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18080:2403..2937+

>mRNA_L-elsbetiae_contig18080.5198.1 ID=mRNA_L-elsbetiae_contig18080.5198.1|Name=mRNA_L-elsbetiae_contig18080.5198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig18080:2403..2937+ (Laminarionema elsbetiae ELsaHSoW15)
CACCAAAACAACCTCTTCCGACGACGGTCGAAAGTGGTGCAACAGCCCGA
CTACTCCGGAAACACGGACACCCACACCGATTGCTCGCCCTCCTGCTCAC
AGATCGCTGCTAAACTTTCAAAACGTGGGCTTCATGCTACTGGACCCCAC
AAAGACAGATTTGTTCCGATTTGCTCCGGGTGCACTCTGTGTGACAAAGG
CAGCGAACCAACGGCCAGCTCGGCTCGAATTACGCAAACCTTTCCCGAGT
GCGGCCGGGTTTCAGTGCGAAACAGGCATAAACCACTTCTCATCGGCGTT
TCTGATCCTTTAGGAACTGGCCTCTGGACCGGGGCATCCACAGAGGATAT
TACGGTATCTGCATACTATGATATGTGACACCAAAACAACCTCTTCCGAC
GACGGTCGAAAGTGGTGCAACAGCCCGACTACTCCGGAAACACGGACACC
CACACCGATTGCTCGCCCTCCTGCTCACAGATCGCTGCTAAACTTTCAAA
ACGTGGGCTTCATGCTACTGGACCCCACAAAGACAGATTTGTTCCGATTT
GCTCCGGGTGCACTCTGTGTGACAAAGGCAGCGAACCAACGGCCAGCTCG
GCTCGAATTACGCAAACCTTTCCCGAGTGCGGCCGGGTTTCAGTGCGAAA
CAGGCATAAACCACTTCTCATCGGCGTTTCTGATCCTTTAGGAACTGGCC
TCTGGACCGGGGCATCCACAGAGGATATTACGGTATCTGCATACTATGAT
ATGTGA
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