mRNA_L-elsbetiae_contig18080.5197.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18080.5197.1
Unique NamemRNA_L-elsbetiae_contig18080.5197.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18080.5197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18080contigL-elsbetiae_contig18080:1262..2173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size912
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18080.5197.1prot_L-elsbetiae_contig18080.5197.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18080 1597..2079 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.9486473-UTR-L-elsbetiae_contig18080:1261..15961622815753.9486473-UTR-L-elsbetiae_contig18080:1261..1596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18080 1262..1596 +
1691683080.9196305-UTR-L-elsbetiae_contig18080:1261..15961691683080.9196305-UTR-L-elsbetiae_contig18080:1261..1596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18080 1262..1596 +
1622815753.9711862-UTR-L-elsbetiae_contig18080:2079..21731622815753.9711862-UTR-L-elsbetiae_contig18080:2079..2173Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18080 2080..2173 +
1691683080.9383266-UTR-L-elsbetiae_contig18080:2079..21731691683080.9383266-UTR-L-elsbetiae_contig18080:2079..2173Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18080 2080..2173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.960101-CDS-L-elsbetiae_contig18080:1596..20791622815753.960101-CDS-L-elsbetiae_contig18080:1596..2079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18080 1597..2079 +
1691683080.9290702-CDS-L-elsbetiae_contig18080:1596..20791691683080.9290702-CDS-L-elsbetiae_contig18080:1596..2079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18080 1597..2079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18080.5197.1

>prot_L-elsbetiae_contig18080.5197.1 ID=prot_L-elsbetiae_contig18080.5197.1|Name=mRNA_L-elsbetiae_contig18080.5197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MCVREDCDVCICLQFLQGGGGLRPVSSYGITKVGGKLFYLCLVRIETPKA
ENADEKRCTTTRKRTAPPVDCYVRPPAHGPRSSLQNTSSMLTSVTVCLKQ
RFRRLIFYVALTVTCRFNGLLGVVTLGSGSVLCLPPSFSLCCFFDNIVGD
TRYHTPWTKI*
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mRNA from alignment at L-elsbetiae_contig18080:1262..2173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18080.5197.1 ID=mRNA_L-elsbetiae_contig18080.5197.1|Name=mRNA_L-elsbetiae_contig18080.5197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig18080:1262..2173+ (Laminarionema elsbetiae ELsaHSoW15)
TATTCAGGTAACTCTTGGCACCCACTTACAATGAAGTTCTCCACGACCAT
TTTTCCGGTGATATTGCTCGCCGGCATTGGCGTAGCTCTTGGTGAGTCTA
AGAAGGAAGTGGGGGGTAGAGTACATGTTTTTTTTTATTTTTTTTATTGT
TGTCTCTAACTCCAGTCGTATACCCTTTGTGAGGGTACACACAGTGGCGT
TGTAATCGAGTGGTTTGTTTCTATCTCGGGCATTTGTATAGTGATATCCC
CCTGTTACTAATAACAGGCTCCACCAGACAGTATGGTTGTCATCTTGTGT
ATCGGACTATACTCGTGGGAGGTAGATGTTGCAGTATGTGTGTGCGGGAG
GATTGTGACGTATGCATATGTTTGCAGTTCCTTCAGGGGGGGGGGGGTCT
CAGGCCAGTCAGTTCCTATGGGATCACAAAAGTCGGTGGGAAATTGTTTT
ACTTGTGTCTGGTTCGCATAGAAACCCCGAAGGCAGAAAACGCCGATGAG
AAACGGTGCACAACCACCCGAAAACGCACGGCACCACCGGTTGATTGCTA
TGTACGCCCTCCTGCTCACGGACCGCGCTCTAGCCTCCAGAATACAAGCT
CCATGTTGACGAGCGTCACGGTTTGTCTCAAGCAGAGGTTCCGTCGGTTG
ATCTTTTATGTAGCATTGACGGTTACGTGTCGGTTCAACGGTCTGTTGGG
CGTTGTGACTTTGGGGTCTGGCTCTGTCCTCTGCCTCCCGCCTTCGTTCT
CTCTTTGTTGTTTCTTCGACAATATCGTAGGTGATACAAGATACCACACC
CCCTGGACCAAAATTTAGAGCTTCAATACTCCGTAACGAAGAAGGTGCCA
GCACCAAACGACATATTTCAGGACCCTCGACTAGATATTTCCAACGCCAT
CTCTTTCGGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18080:1262..2173+

>mRNA_L-elsbetiae_contig18080.5197.1 ID=mRNA_L-elsbetiae_contig18080.5197.1|Name=mRNA_L-elsbetiae_contig18080.5197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig18080:1262..2173+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGTGCGGGAGGATTGTGACGTATGCATATGTTTGCAGTTCCTTCA
GGGGGGGGGGGGTCTCAGGCCAGTCAGTTCCTATGGGATCACAAAAGTCG
GTGGGAAATTGTTTTACTTGTGTCTGGTTCGCATAGAAACCCCGAAGGCA
GAAAACGCCGATGAGAAACGGTGCACAACCACCCGAAAACGCACGGCACC
ACCGGTTGATTGCTATGTACGCCCTCCTGCTCACGGACCGCGCTCTAGCC
TCCAGAATACAAGCTCCATGTTGACGAGCGTCACGGTTTGTCTCAAGCAG
AGGTTCCGTCGGTTGATCTTTTATGTAGCATTGACGGTTACGTGTCGGTT
CAACGGTCTGTTGGGCGTTGTGACTTTGGGGTCTGGCTCTGTCCTCTGCC
TCCCGCCTTCGTTCTCTCTTTGTTGTTTCTTCGACAATATCGTAGGTGAT
ACAAGATACCACACCCCCTGGACCAAAATTTAGATGTGTGTGCGGGAGGA
TTGTGACGTATGCATATGTTTGCAGTTCCTTCAGGGGGGGGGGGGTCTCA
GGCCAGTCAGTTCCTATGGGATCACAAAAGTCGGTGGGAAATTGTTTTAC
TTGTGTCTGGTTCGCATAGAAACCCCGAAGGCAGAAAACGCCGATGAGAA
ACGGTGCACAACCACCCGAAAACGCACGGCACCACCGGTTGATTGCTATG
TACGCCCTCCTGCTCACGGACCGCGCTCTAGCCTCCAGAATACAAGCTCC
ATGTTGACGAGCGTCACGGTTTGTCTCAAGCAGAGGTTCCGTCGGTTGAT
CTTTTATGTAGCATTGACGGTTACGTGTCGGTTCAACGGTCTGTTGGGCG
TTGTGACTTTGGGGTCTGGCTCTGTCCTCTGCCTCCCGCCTTCGTTCTCT
CTTTGTTGTTTCTTCGACAATATCGTAGGTGATACAAGATACCACACCCC
CTGGACCAAAATTTAG
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