mRNA_L-elsbetiae_contig1808.5196.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1808.5196.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE) HSP 1 Score: 410 bits (1054), Expect = 2.240e-127 Identity = 224/394 (56.85%), Postives = 278/394 (70.56%), Query Frame = 1
Query: 481 SRKRGRADEDDESVGFHQGSQFAEVVEAEDLEDD-EPLDWAPTASSTAPAGSTPSTSYVADLPRRPGHAAVRSASAKGKGDVVIAVQQAHFDEAVDLFGGRLHRDWPAATNGVESTPRMGVLPGKNGAPLFQHATREDAIRALLETGQPYGDALHKFLALATLFRLETPRAQEKVDAAVP----EAQGPEYARYFEDAQGNALPKVGIRVVSDSGEGANVDYGSGSLERDPLALFTFGGGTIGGAQNGARRTVLVGSEEDMRLDTPAVAATTITERTMAVRLYDVVVLAARSKPLYEIGPWLSDNEVGIAKVRRRGVSVVETKKGKGYGGKIWVYLNTRSDNFDLCWPGPGFVVFVTQQFCFSGYKNLKKCDKQGTKGMEVGRSGDFSNPATKG 1647
SRKRGR DE + +GF Q S EVV+ DLE+D PL W T ST+ ST TS+VADLPRRPGH AVRSAS KGKGD+V+ + +AH+ AV+L+ G AAT+G+ES P GVL G+ G P F +A+ +DAIRA+LET QPY DALHKFLAL++ +T Q VDA + EA+ +++ F D +GNALPK+G+RV D G GANVDY + E DP +L TFGGGTIGGAQNGAR+ V + SEED RL TP VAATT+ TM +RL D V AARS+ L++ G WL+ N VG+A VRRRG+S+V T++G GG+ WVYL T DN++ CW GPGF++FVTQQ CFSGYKNLK+ DK+G + MEVGRSGDFS PA KG
Sbjct: 44 SRKRGRDDEGNGILGFLQDSALIEVVDDSDLEEDVAPLKWEATIFSTSRI-STSDTSFVADLPRRPGHVAVRSASKKGKGDLVMVITEAHYHHAVELYLGPYGL---AATDGIESDPHEGVLTGRKGRPSFHYASTDDAIRAILETKQPYVDALHKFLALSSFLHWQTTERQANVDAKMEATFTEAELSKHSSLFVDKKGNALPKIGVRVAHDIGGGANVDYSTRGFESDPKSLLTFGGGTIGGAQNGARKLVALDSEEDFRLKTPGVAATTVDHTTMFLRLNDAAVFAARSETLFDKGSWLNKNVVGLAWVRRRGLSLVRTREGTTRGGEPWVYLVTVIDNWEHCWSGPGFLLFVTQQGCFSGYKNLKEHDKEGARQMEVGRSGDFSTPAAKG 433
BLAST of mRNA_L-elsbetiae_contig1808.5196.1 vs. uniprot
Match: D7FLR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR6_ECTSI) HSP 1 Score: 407 bits (1046), Expect = 4.410e-125 Identity = 219/398 (55.03%), Postives = 281/398 (70.60%), Query Frame = 1
Query: 481 SRKRGRADEDDESVGFHQGSQFAEVVEAEDLEDDEPLDWAPTASST----APAGSTPS-TSYVADLPRRPGHAAVRSASAKGKGDVVIAVQQAHFDEAVDLFGGRLHRDWPAATNGVESTPRMGVLPGKNGAPLFQHATREDAIRALLETGQPYGDALHKFLALATLFRLETPRAQEKVDAAVPEA--QGPEYAR--YFEDAQGNALPKVGIRVVSDSGEGANVDYGSGSLERDPLALFTFGGGTIGGAQNGARRTVLVGSEEDMRLDTPAVAATTITERTMAVRLYDVVVLAARSKPLYEIGPWLSDNEVGIAKVRRRGVSVVETKKGKGYGGKIWVYLNTRSDNFDLCWPGPGFVVFVTQQFCFSGYKNLKKCDKQGTKGMEVGRSGDFSNPATKG 1647
S+KRGRADE +GF Q S F + V+ EDL+++EPL+W PT ST AP S + TS+VA+LPRRPGH AVRS S+KGKGD+V+ +++ + EAVDL+ G R+ A +G+ES P GVLP +NGA Q+AT EDAI A+LET QPYGD LHKFLAL++ FR +TP Q K+DA + +G + R F D GNAL K+G+RV SD+G G NVDYG+ E DP +L TF GTIGGAQNGAR+ + + SEED+RL TP VAA T+ E+ M VRL D VLAARS+ L++ G WL+ N VG+A V+ RG+S+V TK+G GG WV+L T DN++ CW GPGFVVF+T +CF+GYKNLK+ D++G MEVGRSGDFS P+ KG
Sbjct: 26 SKKRGRADEGKGLLGFLQDSAFVDAVKVEDLDEEEPLNWTPTVFSTSRVSAPDTSVEAHTSFVAELPRRPGHVAVRSGSSKGKGDLVMVIEKTLYTEAVDLYQGPYGRE---AKDGIESDPHEGVLPDRNGAGSVQYATEEDAISAILETKQPYGDGLHKFLALSSFFRWQTPAKQRKMDAEMKATFTEGELFQRSSLFIDETGNALSKIGVRVASDTGRGVNVDYGARGFESDPKSLLTFNRGTIGGAQNGARKLLAIDSEEDVRLKTPEVAANTVEEKRMFVRLNDAAVLAARSETLFKKGSWLNKNVVGLAWVQGRGLSLVRTKEGTTRGGNPWVWLVTVIDNWEYCWSGPGFVVFMTHNWCFAGYKNLKEHDRKGANQMEVGRSGDFSTPSAKG 420
BLAST of mRNA_L-elsbetiae_contig1808.5196.1 vs. uniprot
Match: D7G6J6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J6_ECTSI) HSP 1 Score: 333 bits (855), Expect = 1.550e-99 Identity = 177/312 (56.73%), Postives = 222/312 (71.15%), Query Frame = 1
Query: 727 IAVQQAHFDEAVDLFGGRLHRDWPAATNGVESTPRMGVLPGKNGAPLFQHATREDAIRALLETGQPYGDALHKFLALATLFRLETPRAQEKVDAAVPEAQGPEYARYFEDAQGNALPKVGIRVVSDSGEGANVDYGSGSLERDPLALFTFGGGTIGGAQNGARRTVLVGSEEDMRLDTPAVAATTITERTMAVRLYDVVVLAARSKPLYEIGPWLSDNEVGIAKVR-RRGVSVVETKKGKGYGGKIWVYLNTRSDNFDLCWPGPGFVVFVTQQFCFSGYKNLKKCDKQGTKGMEVGRSGDFSNPATKGNSVV 1659
+ V +H+ +AV++F RL P AT+G E P GV+P K+ AP FQ A+R DAIRA L T QPYGD LHKFLAL +LF ETP Q K++AA PEAQ PE+A F++A A+P++ +RVV DSG G +VD SG ++ D L TF GG IGGAQ GARRTV++GSEED RL+TP VAATT+T+ TM + LYD VL+ARS LY+ GPWL+ N VG+AKVR + G+S+V+TK+G GG+ WVYL T N++ CW GP FV VT+ CFSGYKNL K DK T+GMEVGRSGDFS PATK + +
Sbjct: 1 MVVPASHYRKAVEIFRRRLDYGLPPATDGNEDEPHPGVIPSKD-APSFQRASRNDAIRATLRTKQPYGDELHKFLALGSLFHWETPAEQTKMEAAFPEAQSPEHAGLFKNANNIAVPRLVVRVVHDSGAGKDVDR-SGRVQADDKVLITFDGGVIGGAQRGARRTVVLGSEEDQRLNTPEVAATTVTDSTMIIPLYDAFVLSARSDTLYQTGPWLNKNVVGLAKVRGQHGLSLVKTKEGSTRGGEPWVYLVTVIGNWEYCWSGPFFVAMVTRWGCFSGYKNLGKHDKT-TRGMEVGRSGDFSTPATKAIATL 309
BLAST of mRNA_L-elsbetiae_contig1808.5196.1 vs. uniprot
Match: D7FWV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV7_ECTSI) HSP 1 Score: 333 bits (855), Expect = 4.400e-99 Identity = 177/312 (56.73%), Postives = 222/312 (71.15%), Query Frame = 1
Query: 727 IAVQQAHFDEAVDLFGGRLHRDWPAATNGVESTPRMGVLPGKNGAPLFQHATREDAIRALLETGQPYGDALHKFLALATLFRLETPRAQEKVDAAVPEAQGPEYARYFEDAQGNALPKVGIRVVSDSGEGANVDYGSGSLERDPLALFTFGGGTIGGAQNGARRTVLVGSEEDMRLDTPAVAATTITERTMAVRLYDVVVLAARSKPLYEIGPWLSDNEVGIAKVR-RRGVSVVETKKGKGYGGKIWVYLNTRSDNFDLCWPGPGFVVFVTQQFCFSGYKNLKKCDKQGTKGMEVGRSGDFSNPATKGNSVV 1659
+ V +H+ +AV++F RL P AT+G E P GV+P K+ AP FQ A+R DAIRA L T QPYGD LHKFLAL +LF ETP Q K++AA PEAQ PE+A F++A A+P++ +RVV DSG G +VD SG ++ D L TF GG IGGAQ GARRTV++GSEED RL+TP VAATT+T+ TM + LYD VL+ARS LY+ GPWL+ N VG+AKVR + G+S+V+TK+G GG+ WVYL T N++ CW GP FV VT+ CFSGYKNL K DK T+GMEVGRSGDFS PATK + +
Sbjct: 1 MVVPASHYRKAVEIFRRRLDYGLPPATDGNEDEPHPGVIPSKD-APSFQRASRNDAIRATLRTKQPYGDELHKFLALGSLFHWETPAEQTKMEAAFPEAQSPEHAGLFKNANNIAVPRLVVRVVHDSGAGKDVDR-SGRVQADDKVLITFDGGVIGGAQRGARRTVVLGSEEDQRLNTPEVAATTVTDSTMIIPLYDAFVLSARSDTLYQTGPWLNKNVVGLAKVRGQHGLSLVKTKEGSTRGGEPWVYLVTVIGNWEYCWSGPFFVAMVTRWGCFSGYKNLGKHDKT-TRGMEVGRSGDFSTPATKAIATL 309
BLAST of mRNA_L-elsbetiae_contig1808.5196.1 vs. uniprot
Match: A0A6H5KU43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU43_9PHAE) HSP 1 Score: 332 bits (851), Expect = 1.950e-98 Identity = 188/348 (54.02%), Postives = 237/348 (68.10%), Query Frame = 1
Query: 631 STPSTSYVADLPRRPGHAAVRSASAKGKGDVVIAVQQAHFDEAVDLFGGRLHRDWP-AATNGVESTPRMGVLPGKNGA-PLFQHATREDAIRALLETGQPYGDALHKFLALATLFRLETPRAQEKVDAAVPEAQGPEYARYFEDAQGNALPKVGIRVVSDSGEGANVDYGSGSLERDPLALFTFGGGTIGGAQNG------ARRTVLVGSEEDMRLDTPAVAATTITERTMAVRLYDVVVLAARSKPLYEIGPWLSDNEVGIAKVR-RRGVSVVETKKGKGYGGKIWVYLNTRSDNFDLCWPGPGFVVFVTQQFCFSGYKNLKKCDKQGTKGMEVGRSGDFSNPATKG 1647
ST TSYVADLPRR G+ AVRSAS KGKG+V I V++ H+DEAV ++ D+ A T+GVE+ PR+GV+P + P+FQ ATR+DA+RALLET QPYGDALHKFLAL ++ ET Q K++A +AQ +++ F D GNALPK+G++VV D+G GA VDY G D L+TFGGGTIGG+QNG +RRTV +GS ED RL P VAATT+TE TM V LYD VVLAAR IGPW +N VG+A V ++ +S+V+T+ G GG+ WVY + N++ CW GP F+V VTQQ CF+G NL + DK+ MEVGRSGD S P TKG
Sbjct: 16 STDGTSYVADLPRRSGYLAVRSASIKGKGNVDIVVRRTHYDEAVRIYQ---ESDYGLAVTDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQLSQHSSLFFDEMGNALPKMGLKVVHDTGAGAAVDYDGGVQSGDSKVLWTFGGGTIGGSQNGDSGEEGSRRTVAIGSAEDERLKAPDVAATTVTESTMLVTLYDGVVLAARG-----IGPWFCENVVGVALVGPKKKLSLVKTRGGTTSGGEQWVYYVLAATNWEYCWSGPAFMVLVTQQACFTGKINLWQKDKR-VNHMEVGRSGDLSTPETKG 354
BLAST of mRNA_L-elsbetiae_contig1808.5196.1 vs. uniprot
Match: A0A6H5LDF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDF4_9PHAE) HSP 1 Score: 213 bits (541), Expect = 2.210e-57 Identity = 137/334 (41.02%), Postives = 186/334 (55.69%), Query Frame = 1
Query: 670 RPGHAAVRSASAKGKGDVVIAVQQAHFDEAVDLFGGRLHRDWPAATNGVESTPRMGVLPG-KNGAPLFQHATREDAIRALLETGQPYGDALHKFLALATLFRLETPRAQEKVDAAVPEAQGPEYARYFEDAQGNALPKVGIRVVSDSGEGANVDYGSGSLERDPLALF----TFGGG-TIGGAQNGARRTVLVGSEEDMRLDTPAVAATTITERTMAVRLYDVVVLAARSKPLYEIGPWLSDNEVGIAKVRRRGVSVVETKKGKGYGGKIWVYLNTRSDNFDLCWPGPGFVVFVTQQFCFSGYKNLKKCDKQGTKGMEVGRSGDFSNPATKGNS 1653
RPG A RS S G G VI + + ++ A+DL+ R ++PA T+GVE P GV+ G K G P F + A++AL++ +PYG HKF+ LA+ E+P QEK+ +PEA+ P+++ F D P + +V D+G G + DY SG L + FGG + G + GA R V VG ED R+ T A A TT E TMA+ L+DVV + R L++ G WL N +GIAKV + VS+VET K G V+ +N D C GP F+ F+ FSGYKNL K DK+ G+EVGRSGDFS PA+KG +
Sbjct: 22 RPGEVAFRSTSVGGNGGTVIVIPTSRYEAALDLYSRR--HEFPATTDGVEDPPVPGVVRGGKKGVPQFMRTDKSTAVKALMQAKEPYGSPAHKFIFLASALEKESPAVQEKMVDRLPEARDPQFSHLFVDDSNKPSPLWVVDMVHDTGGGEDTDY-SGRLSDAKTRAYHDGRVFGGAQSAGSGRRGATRIVEVGLAEDERVRTEA-ADTTHVESTMALPLWDVVAIMGRKDTLFKQGLWLFGNAIGIAKVGSK-VSLVETTPKKSRSG---VFFTVMINNRDYCGTGPFFLTFLVG-CSFSGYKNLAKHDKKAA-GLEVGRSGDFSTPASKGRA 345
BLAST of mRNA_L-elsbetiae_contig1808.5196.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI) HSP 1 Score: 158 bits (399), Expect = 4.620e-37 Identity = 103/142 (72.54%), Postives = 111/142 (78.17%), Query Frame = 1
Query: 85 MIECVARLLRFADELEEGED--PRASLVRYGVEAVLTLAGSIDRDASMAGHEGPSSADADELRHQGEKLIQFACAPGFDPVEEAPDSEEQITTSATPGAPTRXXXXXXXXXXAGN-HRLSLGSEQSDQEEEDKEPSRKRGRA 501
MIE ARLLRFADELEEG D R SL+RYGVEAVLTLAG+I+ D+S AGHEGPS ADADELRHQ +K+IQFACA GFD +E DSEE ITTSATP A TRXXXXXXXX AG HRLS SEQSDQ EEDKE GR+
Sbjct: 1 MIEYAARLLRFADELEEGADVDSRVSLLRYGVEAVLTLAGAIEGDSSRAGHEGPSRADADELRHQEDKVIQFACALGFDAADEPCDSEE-ITTSATPAAHTRXXXXXXXXRRAGKKHRLSFDSEQSDQVEEDKEVPAANGRS 141 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1808.5196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1808.5196.1 >prot_L-elsbetiae_contig1808.5196.1 ID=prot_L-elsbetiae_contig1808.5196.1|Name=mRNA_L-elsbetiae_contig1808.5196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=531bp MIECVARLLRFADELEEGEDPRASLVRYGVEAVLTLAGSIDRDASMAGHEback to top mRNA from alignment at L-elsbetiae_contig1808:13354..19706- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1808.5196.1 ID=mRNA_L-elsbetiae_contig1808.5196.1|Name=mRNA_L-elsbetiae_contig1808.5196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6353bp|location=Sequence derived from alignment at L-elsbetiae_contig1808:13354..19706- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1808:13354..19706- >mRNA_L-elsbetiae_contig1808.5196.1 ID=mRNA_L-elsbetiae_contig1808.5196.1|Name=mRNA_L-elsbetiae_contig1808.5196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3186bp|location=Sequence derived from alignment at L-elsbetiae_contig1808:13354..19706- (Laminarionema elsbetiae ELsaHSoW15)back to top |