mRNA_L-elsbetiae_contig1808.5194.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1808.5194.1
Unique NamemRNA_L-elsbetiae_contig1808.5194.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1808.5194.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 7.330e-84
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 1
Query:    1 ASGMLQQRYADRIDAVMVTGCDEASAVGGKIVPVLGEVDRVKAELRTGQGKLGIESLRTGDAYLCFDAERTWYRDGFWALGALILDETRLRVLEARNALESCGACDFSYQCDAVFFRGSSSVQEKMRLRFSDLFKGD 411
            ASGMLQQRYADRIDAVMVTGCDEASAVGGKIVPVLGEVDRVKAELRTGQGKLGIESLRTGDAYLC DAERTWYRDGFWALGALILDETRLRVLEARNALESCGACDFSYQCDAVFFRGSSSVQEKMRLRFSDLFKGD
Sbjct:  707 ASGMLQQRYADRIDAVMVTGCDEASAVGGKIVPVLGEVDRVKAELRTGQGKLGIESLRTGDAYLCLDAERTWYRDGFWALGALILDETRLRVLEARNALESCGACDFSYQCDAVFFRGSSSVQEKMRLRFSDLFKGD 843          
BLAST of mRNA_L-elsbetiae_contig1808.5194.1 vs. uniprot
Match: A0A6H5JTY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTY9_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 1.560e-77
Identity = 129/137 (94.16%), Postives = 129/137 (94.16%), Query Frame = 1
Query:    1 ASGMLQQRYADRIDAVMVTGCDEASAVGGKIVPVLGEVDRVKAELRTGQGKLGIESLRTGDAYLCFDAERTWYRDGFWALGALILDETRLRVLEARNALESCGACDFSYQCDAVFFRGSSSVQEKMRLRFSDLFKGD 411
            ASGMLQQRYADRID VMVTGCDEA AVGG IVPVLGEVDRVKAELRTGQ KLGIESLRTGDAYLC DAERTWYRDGFWALGALILDETRLRVLEARNALESCGA  FSYQCDAVFFRGSSSVQEKMRLRF DLFKGD
Sbjct:  587 ASGMLQQRYADRIDTVMVTGCDEAFAVGGIIVPVLGEVDRVKAELRTGQEKLGIESLRTGDAYLCLDAERTWYRDGFWALGALILDETRLRVLEARNALESCGASGFSYQCDAVFFRGSSSVQEKMRLRFRDLFKGD 723          
BLAST of mRNA_L-elsbetiae_contig1808.5194.1 vs. uniprot
Match: A0A6H5L909_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L909_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 1.600e-75
Identity = 125/133 (93.98%), Postives = 125/133 (93.98%), Query Frame = 1
Query:    1 ASGMLQQRYADRIDAVMVTGCDEASAVGGKIVPVLGEVDRVKAELRTGQGKLGIESLRTGDAYLCFDAERTWYRDGFWALGALILDETRLRVLEARNALESCGACDFSYQCDAVFFRGSSSVQEKMRLRFSDL 399
            ASGMLQQRYADRIDAVM TGCDEA AVGGKIVPVLGEVDRVKAELRTGQ KLGIESLRTGD YLC DAERTWYRDGFWALGALILDETRLRVLEARNALESCGA  FSYQCDAVFFRGSSSVQ KMRLRFSDL
Sbjct:  257 ASGMLQQRYADRIDAVMATGCDEAFAVGGKIVPVLGEVDRVKAELRTGQEKLGIESLRTGDTYLCLDAERTWYRDGFWALGALILDETRLRVLEARNALESCGASGFSYQCDAVFFRGSSSVQGKMRLRFSDL 389          
BLAST of mRNA_L-elsbetiae_contig1808.5194.1 vs. uniprot
Match: D7FWV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV6_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 1.710e-75
Identity = 120/137 (87.59%), Postives = 126/137 (91.97%), Query Frame = 1
Query:    1 ASGMLQQRYADRIDAVMVTGCDEASAVGGKIVPVLGEVDRVKAELRTGQGKLGIESLRTGDAYLCFDAERTWYRDGFWALGALILDETRLRVLEARNALESCGACDFSYQCDAVFFRGSSSVQEKMRLRFSDLFKGD 411
            ASGMLQQRYA+RIDAVMVT CDEASAVGGK+VPVL EVDR KAELRTGQG+ GIE+LRTGDAYLCFDAERTWYRDGFWALGALILDETRLRVLEARNALESCGA DFSYQCDAVFFRG  SV+E+MRL F  LF GD
Sbjct:  515 ASGMLQQRYANRIDAVMVTSCDEASAVGGKVVPVLCEVDRAKAELRTGQGEFGIEALRTGDAYLCFDAERTWYRDGFWALGALILDETRLRVLEARNALESCGASDFSYQCDAVFFRGPCSVREEMRLCFGHLFSGD 651          
BLAST of mRNA_L-elsbetiae_contig1808.5194.1 vs. uniprot
Match: A0A6H5KCL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCL4_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 2.150e-74
Identity = 123/133 (92.48%), Postives = 125/133 (93.98%), Query Frame = 1
Query:    4 SGMLQQRYADRIDAVMVTGCDEASAVGGKIVPVLGEVDRVKAELRTGQGKLGIESLRTGDAYLCFDAERTWYRDGFWALGALILDETRLRVLEARNALESCGACDFSYQCDAVFFRGSSSVQEKMRLRFSDLF 402
            SGMLQQRYADRIDAVMVT CDEASAVGGKIVPVL EVDRVKAELRT QG +GIESLRTGDAYLCFDA RTWYRDGFWALGALILDETRLRVLEARNALESCGA DFSYQCDAVFF+GSSSVQEKMRLR S LF
Sbjct:  125 SGMLQQRYADRIDAVMVTSCDEASAVGGKIVPVLCEVDRVKAELRTRQGDVGIESLRTGDAYLCFDAGRTWYRDGFWALGALILDETRLRVLEARNALESCGASDFSYQCDAVFFKGSSSVQEKMRLRSSHLF 257          
BLAST of mRNA_L-elsbetiae_contig1808.5194.1 vs. uniprot
Match: D7FV89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV89_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 2.040e-73
Identity = 121/137 (88.32%), Postives = 127/137 (92.70%), Query Frame = 1
Query:    1 ASGMLQQRYADRIDAVMVTGCDEASAVGGKIVPVLGEVDRVKAELRTGQGKLGIESLRTGDAYLCFDAERTWYRDGFWALGALILDETRLRVLEARNALESCGACDFSYQCDAVFFRGSSSVQEKMRLRFSDLFKGD 411
            ASGMLQQRYA+RIDAVMVT CDEASAVGGK+VPVL EVDR KAELRTGQG+LGIE+LRTGDAYLCFDAERTWYRDGFWALGALILDETRLRVLEARNALESCGA DFSYQCDAVFFRG  SV+E+MRL F  LF GD
Sbjct:  515 ASGMLQQRYANRIDAVMVTSCDEASAVGGKVVPVLCEVDRAKAELRTGQGELGIEALRTGDAYLCFDAERTWYRDGFWALGALILDETRLRVLEARNALESCGASDFSYQCDAVFFRGPCSVREEMRLCFGHLFSGD 651          
BLAST of mRNA_L-elsbetiae_contig1808.5194.1 vs. uniprot
Match: A0A6H5KWL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL4_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 1.330e-72
Identity = 118/136 (86.76%), Postives = 125/136 (91.91%), Query Frame = 1
Query:    4 SGMLQQRYADRIDAVMVTGCDEASAVGGKIVPVLGEVDRVKAELRTGQGKLGIESLRTGDAYLCFDAERTWYRDGFWALGALILDETRLRVLEARNALESCGACDFSYQCDAVFFRGSSSVQEKMRLRFSDLFKGD 411
            SGMLQQRYADRIDAVMVT  DEASAVGGKIVPVL EVDRVKAELRTGQG LGI+SL TGDAYLCFDAERTWYRDGFWALGA+ILDETRLRVLE RNALE CGA ++S+QCDAVFFRGSSSVQE MRLRF+ LF G+
Sbjct:  109 SGMLQQRYADRIDAVMVTSSDEASAVGGKIVPVLCEVDRVKAELRTGQGDLGIDSLHTGDAYLCFDAERTWYRDGFWALGAIILDETRLRVLETRNALELCGASEYSFQCDAVFFRGSSSVQENMRLRFNQLFSGN 244          
BLAST of mRNA_L-elsbetiae_contig1808.5194.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 4.280e-64
Identity = 125/199 (62.81%), Postives = 127/199 (63.82%), Query Frame = 1
Query:    1 ASGMLQQRYADRIDAVMVTGCDEASAVGGKIVPVLGEVDRVKAELRTGQGKLGIESLRTGDAYLCFDAERTWYRDGFWALGA--------------------------------------------------------------LILDETRLRVLEARNALESCGACDFSYQCDAVFFRGSSSVQEKMRLRFSDLFKGD 411
            ASGMLQQRYADRIDAVMVT  DEASAVGGKIVPVL EVDRVKAELRTGQG LGI+SL TGDAYLCFDAERTWYRDGFWALGA                                                              LILDETRLRVLEARNALES GA DFSYQCDAVFFRGSSSVQ+KMRLRF  LF GD
Sbjct:  701 ASGMLQQRYADRIDAVMVTSTDEASAVGGKIVPVLCEVDRVKAELRTGQGDLGIDSLHTGDAYLCFDAERTWYRDGFWALGAXDEASAVGGKIVPVLCEVDRVKAELRTGQGALGIESLRTGDAYLCFEAERTWYRDGFWALGTLILDETRLRVLEARNALESFGASDFSYQCDAVFFRGSSSVQDKMRLRFDHLFSGD 899          
BLAST of mRNA_L-elsbetiae_contig1808.5194.1 vs. uniprot
Match: A0A6H5JHT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT1_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 9.490e-64
Identity = 111/137 (81.02%), Postives = 118/137 (86.13%), Query Frame = 1
Query:    1 ASGMLQQRYADRIDAVMVTGCDEASAVGGKIVPVLGEVDRVKAELRTGQGKLGIESLRTGDAYLCFDAERTWYRDGFWALGALILDETRLRVLEARNALESCGACDFSYQCDAVFFRGSSSVQEKMRLRFSDLFKGD 411
            ASGMLQQ YADRIDAVMVT  DEASA+GGKI+PVL EV R  AELRTGQG LGIESLRTGDAYLC DAERTW RDGFWALGALILD+T LRVLE RNALESCGA DFSYQCD VFF+G  SV+E+MRLR S LF G+
Sbjct:  540 ASGMLQQGYADRIDAVMVTSNDEASALGGKIMPVLCEVIRASAELRTGQGDLGIESLRTGDAYLCVDAERTWNRDGFWALGALILDDTPLRVLEERNALESCGASDFSYQCDTVFFKGPCSVREEMRLRSSHLFSGN 676          
BLAST of mRNA_L-elsbetiae_contig1808.5194.1 vs. uniprot
Match: A0A6H5KEQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ4_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 2.600e-62
Identity = 122/204 (59.80%), Postives = 125/204 (61.27%), Query Frame = 1
Query:    1 ASGMLQQRYADRIDAVMVTGCDEASAVGGKIVPVLGEVDRVKAELRTGQGKLGIESL-------------------------------------------------------------------RTGDAYLCFDAERTWYRDGFWALGALILDETRLRVLEARNALESCGACDFSYQCDAVFFRGSSSVQEKMRLRFSDLFKGD 411
            ASG+LQQRYADRI AVMVT  DEASAVGGKIVPVL EVDRVKAELRTGQG LGI+SL                                                                   RTGDAY CFDAERTWYRDGFWALG LILDETRLRVLEARNALESCGA DFSYQCDAVFF GSSSVQE+MRLRF  LF GD
Sbjct:  580 ASGLLQQRYADRIGAVMVTSSDEASAVGGKIVPVLCEVDRVKAELRTGQGDLGIDSLHTGDAFLGFDAERTWYRDGFWELGALILDETRLRVLEARNALELCGAXDRVKAELRTGQGDLGIKSLRTGDAYRCFDAERTWYRDGFWALGTLILDETRLRVLEARNALESCGASDFSYQCDAVFFTGSSSVQERMRLRFDHLFSGD 783          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1808.5194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSM3_9PHAE7.330e-8499.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTY9_9PHAE1.560e-7794.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L909_9PHAE1.600e-7593.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWV6_ECTSI1.710e-7587.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCL4_9PHAE2.150e-7492.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV89_ECTSI2.040e-7388.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWL4_9PHAE1.330e-7286.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS9_9PHAE4.280e-6462.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHT1_9PHAE9.490e-6481.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEQ4_9PHAE2.600e-6259.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1808contigL-elsbetiae_contig1808:9702..10112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.1
Seed ortholog evalue2.9e-61
Seed eggNOG ortholog2880.D7FV89
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3IK@1,2SAKM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size412
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.6995842-UTR-L-elsbetiae_contig1808:9701..97101622815753.6995842-UTR-L-elsbetiae_contig1808:9701..9710Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1808 9702..9710 +
1691683080.7417498-UTR-L-elsbetiae_contig1808:9701..97101691683080.7417498-UTR-L-elsbetiae_contig1808:9701..9710Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1808 9702..9710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.7104316-CDS-L-elsbetiae_contig1808:9710..101121622815753.7104316-CDS-L-elsbetiae_contig1808:9710..10112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1808 9711..10112 +
1691683080.7547917-CDS-L-elsbetiae_contig1808:9710..101121691683080.7547917-CDS-L-elsbetiae_contig1808:9710..10112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1808 9711..10112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1808.5194.1prot_L-elsbetiae_contig1808.5194.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1808 9711..10112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1808.5194.1

>prot_L-elsbetiae_contig1808.5194.1 ID=prot_L-elsbetiae_contig1808.5194.1|Name=mRNA_L-elsbetiae_contig1808.5194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MLQQRYADRIDAVMVTGCDEASAVGGKIVPVLGEVDRVKAELRTGQGKLG
IESLRTGDAYLCFDAERTWYRDGFWALGALILDETRLRVLEARNALESCG
ACDFSYQCDAVFFRGSSSVQEKMRLRFSDLFKGD
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mRNA from alignment at L-elsbetiae_contig1808:9702..10112+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1808.5194.1 ID=mRNA_L-elsbetiae_contig1808.5194.1|Name=mRNA_L-elsbetiae_contig1808.5194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=411bp|location=Sequence derived from alignment at L-elsbetiae_contig1808:9702..10112+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAGTGGCATGTTGCAGCAGAGATACGCAGACAGGATAGACGCTGTCAT GGTTACGGGCTGTGACGAGGCTTCCGCTGTGGGCGGCAAAATTGTGCCTG TCCTAGGCGAGGTCGATCGCGTGAAGGCTGAACTTCGGACGGGACAGGGG AAGCTTGGGATCGAGTCACTTCGCACTGGTGATGCATACCTTTGTTTCGA CGCAGAACGGACTTGGTATAGAGATGGCTTCTGGGCGTTGGGTGCGCTCA TTCTTGACGAAACTCGATTGCGAGTGTTGGAGGCGAGGAACGCTCTCGAA TCTTGCGGCGCGTGTGACTTTAGCTACCAGTGCGACGCGGTATTCTTCAG GGGATCTTCGTCGGTGCAAGAGAAGATGAGACTTCGCTTCAGCGATTTGT TTAAAGGCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1808:9702..10112+

>mRNA_L-elsbetiae_contig1808.5194.1 ID=mRNA_L-elsbetiae_contig1808.5194.1|Name=mRNA_L-elsbetiae_contig1808.5194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig1808:9702..10112+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCAGCAGAGATACGCAGACAGGATAGACGCTGTCATGGTTACGGG
CTGTGACGAGGCTTCCGCTGTGGGCGGCAAAATTGTGCCTGTCCTAGGCG
AGGTCGATCGCGTGAAGGCTGAACTTCGGACGGGACAGGGGAAGCTTGGG
ATCGAGTCACTTCGCACTGGTGATGCATACCTTTGTTTCGACGCAGAACG
GACTTGGTATAGAGATGGCTTCTGGGCGTTGGGTGCGCTCATTCTTGACG
AAACTCGATTGCGAGTGTTGGAGGCGAGGAACGCTCTCGAATCTTGCGGC
GCGTGTGACTTTAGCTACCAGTGCGACGCGGTATTCTTCAGGGGATCTTC
GTCGGTGCAAGAGAAGATGAGACTTCGCTTCAGCGATTTGTTTAAAGGCG
ACATGTTGCAGCAGAGATACGCAGACAGGATAGACGCTGTCATGGTTACG
GGCTGTGACGAGGCTTCCGCTGTGGGCGGCAAAATTGTGCCTGTCCTAGG
CGAGGTCGATCGCGTGAAGGCTGAACTTCGGACGGGACAGGGGAAGCTTG
GGATCGAGTCACTTCGCACTGGTGATGCATACCTTTGTTTCGACGCAGAA
CGGACTTGGTATAGAGATGGCTTCTGGGCGTTGGGTGCGCTCATTCTTGA
CGAAACTCGATTGCGAGTGTTGGAGGCGAGGAACGCTCTCGAATCTTGCG
GCGCGTGTGACTTTAGCTACCAGTGCGACGCGGTATTCTTCAGGGGATCT
TCGTCGGTGCAAGAGAAGATGAGACTTCGCTTCAGCGATTTGTTTAAAGG
CGAC
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