mRNA_L-elsbetiae_contig1808.5193.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE) HSP 1 Score: 250 bits (638), Expect = 1.500e-74 Identity = 113/117 (96.58%), Postives = 115/117 (98.29%), Query Frame = 1 Query: 28 MLRGLKERVASSSTGPSPPGYRWCCVEQVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTGYRVRFSATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378 MLRGLK+RVASSSTGPSPPGYRWCCVEQVDQAEPLPNR+NGWRY GPRGVMYRRQAVFGTGYRVR SATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF Sbjct: 1 MLRGLKKRVASSSTGPSPPGYRWCCVEQVDQAEPLPNRNNGWRYKGPRGVMYRRQAVFGTGYRVRISATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 117
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE) HSP 1 Score: 166 bits (419), Expect = 4.970e-45 Identity = 78/118 (66.10%), Postives = 88/118 (74.58%), Query Frame = 1 Query: 28 MLRGLKERVASSSTGPSPPGYRWCCVEQVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTGYRVRFS-ATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378 M R V+SS YRWC VEQVDQAEPL NRSNGWRY GPRGV YRRQAVFGTGYR+R S +S GPG+ WFNSHP GGDP+L +FQ+WA RG+VHPRDA+AW+TAF Sbjct: 1 MARSTTAAVSSSRAA----SYRWCYVEQVDQAEPLANRSNGWRYRGPRGVTYRRQAVFGTGYRIRISFPSSAGPGHTWFNSHPVGGDPNLYSFQTWARMVLERGMVHPRDAEAWRTAF 114
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5K6B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B4_9PHAE) HSP 1 Score: 156 bits (395), Expect = 4.920e-43 Identity = 75/118 (63.56%), Postives = 87/118 (73.73%), Query Frame = 1 Query: 28 MLRGLKERVASSSTGPSPPGYRWCCVEQVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTGYRVRFS-ATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378 M R SSS S YRWC +EQVDQ EPL RSNGWRY P GV YRRQAVFGTG+R+R S A+S GPG+RWFNSHP GGDP+L NFQ+WA +RG+VHPR+A+AW+TAF Sbjct: 1 MARATAAAAVSSSHATS---YRWCYMEQVDQDEPLAGRSNGWRYMEPGGVTYRRQAVFGTGFRIRISFASSPGPGHRWFNSHPLGGDPNLYNFQTWARTVLQRGMVHPREAEAWRTAF 115
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5KE84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE84_9PHAE) HSP 1 Score: 146 bits (369), Expect = 7.210e-43 Identity = 70/102 (68.63%), Postives = 76/102 (74.51%), Query Frame = 1 Query: 82 PGYRWCCVEQVDQAEPLPNRSNGWRYNGPR-GVMYRRQAVFGTGYRVR--FSATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378 P YRWC EQVDQA PLP+RSNGWRY GPR G YRRQAVF TGYR+R F GPG+RWFNSH GGDP L +FQ+WA RRGLVHPRDADAW+ A Sbjct: 20 PEYRWCYAEQVDQAAPLPDRSNGWRYLGPREGQTYRRQAVFRTGYRLRLPFPRLPAGPGHRWFNSHQLGGDPDLIDFQAWARTMLRRGLVHPRDADAWRAAL 121
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5JDB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB7_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.770e-42 Identity = 77/116 (66.38%), Postives = 89/116 (76.72%), Query Frame = 1 Query: 28 MLRGLKERVASSSTGPSPPG-----YRWCCVEQVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTGYRVRFS-ATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDA 357 ML LK+++A S+T + YRWC VEQVDQAEPL NRSNGWRY GPRGV YRRQAVFGTGYR+R S +S GPG++WFNSHP GGDP+L NFQ+WA RRG+VHPRDA Sbjct: 1 MLAHLKKKMARSNTCAASSSSYATSYRWCYVEQVDQAEPLANRSNGWRYMGPRGVTYRRQAVFGTGYRIRISFPSSAGPGHQWFNSHPLGGDPNLYNFQTWARTVLRRGMVHPRDA 116
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI) HSP 1 Score: 158 bits (400), Expect = 1.780e-42 Identity = 72/105 (68.57%), Postives = 82/105 (78.10%), Query Frame = 1 Query: 67 TGPSPPGYRWCCVEQVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTGYRVRFS-ATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378 + P YRWC VEQVDQA PL RSNGWRY GP G+ YRRQAVFGTG+RVR S +S GPGYRWFNSHP GGDP+L NFQ+WA + G+VHPRDA+AW+TAF Sbjct: 10 SSPHATSYRWCYVEQVDQAAPLAGRSNGWRYLGPGGITYRRQAVFGTGFRVRISFPSSPGPGYRWFNSHPLGGDPNLYNFQTWARTVLQGGMVHPRDAEAWRTAF 114
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5K992_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K992_9PHAE) HSP 1 Score: 154 bits (389), Expect = 5.410e-41 Identity = 80/120 (66.67%), Postives = 82/120 (68.33%), Query Frame = 1 Query: 28 MLRGLKERVASSSTGPSPPG---YRWCCVEQVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTGYRVRFSATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378 ML LK R A+SS PSPP YRWC VEQVDQAEPL NRSNGWRY GPRGV YRRQA FG GYR+ GGD SLENFQSWA R WRRGLVHPRDADAWKTAF Sbjct: 1 MLHRLKNRFAASSGEPSPPQQSVYRWCYVEQVDQAEPLANRSNGWRYVGPRGVTYRRQAGFGAGYRI------------------LGGDQSLENFQSWARRKWRRGLVHPRDADAWKTAF 102
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5JU52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU52_9PHAE) HSP 1 Score: 144 bits (364), Expect = 5.800e-41 Identity = 70/126 (55.56%), Postives = 82/126 (65.08%), Query Frame = 1 Query: 67 TGPSPPGYRWCCVEQVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTG---------------------YRVRFS-ATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378 + P YRWC VEQVDQA PL RSNGWR+ GP G+ YRRQAVFGTG +RVR S +S GPGYRWF+SHP GGDP+L NFQ+W +RG+VHPRDA+AW+TAF Sbjct: 10 SSPHATSYRWCYVEQVDQAAPLAGRSNGWRHMGPEGITYRRQAVFGTGXXXXXXXXXXXXXXXXXXXXXFRVRISFPSSPGPGYRWFHSHPLGGDPNLYNFQTWTRTVLQRGMVHPRDAEAWRTAF 135
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5KR88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR88_9PHAE) HSP 1 Score: 140 bits (352), Expect = 6.220e-39 Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 1 Query: 109 QVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTGYRVRFS-ATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTA 375 +VDQAEPL NRSNGWRY GPRGV YRRQAVFGTG+RVR S +S PG+ WFNSHP GGDP+L NFQ+WA + G+VHPRDA+AW+TA Sbjct: 3 RVDQAEPLANRSNGWRYRGPRGVTYRRQAVFGTGFRVRISFPSSARPGHMWFNSHPLGGDPNLYNFQTWARTVLQSGMVHPRDAEAWRTA 92
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5KTC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC4_9PHAE) HSP 1 Score: 146 bits (368), Expect = 3.630e-38 Identity = 72/120 (60.00%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 28 MLRGLKERVASSSTGPSPPGYRWCCVEQVDQAEPLPNRSNGWRYNGPR-GVMYRRQAVFGTGYRVR--FSATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378 MLR K+R ++ P YRWC VEQVD+A P+ RSNGWRY GPR G YRRQAVFG G+R+ F GPG+RWFNSHP GGDP L +FQ+WA RR LVHPRDADAW+ AF Sbjct: 1 MLRHYKKRHYYAAATARRPEYRWCGVEQVDEAVPMSTRSNGWRYLGPREGETYRRQAVFGAGFRLHLPFPRLPPGPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHPRDADAWRAAF 120 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1808.5193.1 >prot_L-elsbetiae_contig1808.5193.1 ID=prot_L-elsbetiae_contig1808.5193.1|Name=mRNA_L-elsbetiae_contig1808.5193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp MLRGLKERVASSSTGPSPPGYRWCCVEQVDQAEPLPNRSNGWRYNGPRGVback to top mRNA from alignment at L-elsbetiae_contig1808:7560..7937+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1808.5193.1 ID=mRNA_L-elsbetiae_contig1808.5193.1|Name=mRNA_L-elsbetiae_contig1808.5193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig1808:7560..7937+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1808:7560..7937+ >mRNA_L-elsbetiae_contig1808.5193.1 ID=mRNA_L-elsbetiae_contig1808.5193.1|Name=mRNA_L-elsbetiae_contig1808.5193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig1808:7560..7937+ (Laminarionema elsbetiae ELsaHSoW15)back to top |