mRNA_L-elsbetiae_contig1808.5193.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1808.5193.1
Unique NamemRNA_L-elsbetiae_contig1808.5193.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 1.500e-74
Identity = 113/117 (96.58%), Postives = 115/117 (98.29%), Query Frame = 1
Query:   28 MLRGLKERVASSSTGPSPPGYRWCCVEQVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTGYRVRFSATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378
            MLRGLK+RVASSSTGPSPPGYRWCCVEQVDQAEPLPNR+NGWRY GPRGVMYRRQAVFGTGYRVR SATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF
Sbjct:    1 MLRGLKKRVASSSTGPSPPGYRWCCVEQVDQAEPLPNRNNGWRYKGPRGVMYRRQAVFGTGYRVRISATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 117          
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 4.970e-45
Identity = 78/118 (66.10%), Postives = 88/118 (74.58%), Query Frame = 1
Query:   28 MLRGLKERVASSSTGPSPPGYRWCCVEQVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTGYRVRFS-ATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378
            M R     V+SS        YRWC VEQVDQAEPL NRSNGWRY GPRGV YRRQAVFGTGYR+R S  +S GPG+ WFNSHP GGDP+L +FQ+WA     RG+VHPRDA+AW+TAF
Sbjct:    1 MARSTTAAVSSSRAA----SYRWCYVEQVDQAEPLANRSNGWRYRGPRGVTYRRQAVFGTGYRIRISFPSSAGPGHTWFNSHPVGGDPNLYSFQTWARMVLERGMVHPRDAEAWRTAF 114          
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5K6B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B4_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 4.920e-43
Identity = 75/118 (63.56%), Postives = 87/118 (73.73%), Query Frame = 1
Query:   28 MLRGLKERVASSSTGPSPPGYRWCCVEQVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTGYRVRFS-ATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378
            M R       SSS   S   YRWC +EQVDQ EPL  RSNGWRY  P GV YRRQAVFGTG+R+R S A+S GPG+RWFNSHP GGDP+L NFQ+WA    +RG+VHPR+A+AW+TAF
Sbjct:    1 MARATAAAAVSSSHATS---YRWCYMEQVDQDEPLAGRSNGWRYMEPGGVTYRRQAVFGTGFRIRISFASSPGPGHRWFNSHPLGGDPNLYNFQTWARTVLQRGMVHPREAEAWRTAF 115          
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5KE84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE84_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 7.210e-43
Identity = 70/102 (68.63%), Postives = 76/102 (74.51%), Query Frame = 1
Query:   82 PGYRWCCVEQVDQAEPLPNRSNGWRYNGPR-GVMYRRQAVFGTGYRVR--FSATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378
            P YRWC  EQVDQA PLP+RSNGWRY GPR G  YRRQAVF TGYR+R  F     GPG+RWFNSH  GGDP L +FQ+WA    RRGLVHPRDADAW+ A 
Sbjct:   20 PEYRWCYAEQVDQAAPLPDRSNGWRYLGPREGQTYRRQAVFRTGYRLRLPFPRLPAGPGHRWFNSHQLGGDPDLIDFQAWARTMLRRGLVHPRDADAWRAAL 121          
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5JDB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB7_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.770e-42
Identity = 77/116 (66.38%), Postives = 89/116 (76.72%), Query Frame = 1
Query:   28 MLRGLKERVASSSTGPSPPG-----YRWCCVEQVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTGYRVRFS-ATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDA 357
            ML  LK+++A S+T  +        YRWC VEQVDQAEPL NRSNGWRY GPRGV YRRQAVFGTGYR+R S  +S GPG++WFNSHP GGDP+L NFQ+WA    RRG+VHPRDA
Sbjct:    1 MLAHLKKKMARSNTCAASSSSYATSYRWCYVEQVDQAEPLANRSNGWRYMGPRGVTYRRQAVFGTGYRIRISFPSSAGPGHQWFNSHPLGGDPNLYNFQTWARTVLRRGMVHPRDA 116          
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 1.780e-42
Identity = 72/105 (68.57%), Postives = 82/105 (78.10%), Query Frame = 1
Query:   67 TGPSPPGYRWCCVEQVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTGYRVRFS-ATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378
            + P    YRWC VEQVDQA PL  RSNGWRY GP G+ YRRQAVFGTG+RVR S  +S GPGYRWFNSHP GGDP+L NFQ+WA    + G+VHPRDA+AW+TAF
Sbjct:   10 SSPHATSYRWCYVEQVDQAAPLAGRSNGWRYLGPGGITYRRQAVFGTGFRVRISFPSSPGPGYRWFNSHPLGGDPNLYNFQTWARTVLQGGMVHPRDAEAWRTAF 114          
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5K992_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K992_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 5.410e-41
Identity = 80/120 (66.67%), Postives = 82/120 (68.33%), Query Frame = 1
Query:   28 MLRGLKERVASSSTGPSPPG---YRWCCVEQVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTGYRVRFSATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378
            ML  LK R A+SS  PSPP    YRWC VEQVDQAEPL NRSNGWRY GPRGV YRRQA FG GYR+                   GGD SLENFQSWA R WRRGLVHPRDADAWKTAF
Sbjct:    1 MLHRLKNRFAASSGEPSPPQQSVYRWCYVEQVDQAEPLANRSNGWRYVGPRGVTYRRQAGFGAGYRI------------------LGGDQSLENFQSWARRKWRRGLVHPRDADAWKTAF 102          
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5JU52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU52_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 5.800e-41
Identity = 70/126 (55.56%), Postives = 82/126 (65.08%), Query Frame = 1
Query:   67 TGPSPPGYRWCCVEQVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTG---------------------YRVRFS-ATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378
            + P    YRWC VEQVDQA PL  RSNGWR+ GP G+ YRRQAVFGTG                     +RVR S  +S GPGYRWF+SHP GGDP+L NFQ+W     +RG+VHPRDA+AW+TAF
Sbjct:   10 SSPHATSYRWCYVEQVDQAAPLAGRSNGWRHMGPEGITYRRQAVFGTGXXXXXXXXXXXXXXXXXXXXXFRVRISFPSSPGPGYRWFHSHPLGGDPNLYNFQTWTRTVLQRGMVHPRDAEAWRTAF 135          
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5KR88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR88_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 6.220e-39
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 1
Query:  109 QVDQAEPLPNRSNGWRYNGPRGVMYRRQAVFGTGYRVRFS-ATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTA 375
            +VDQAEPL NRSNGWRY GPRGV YRRQAVFGTG+RVR S  +S  PG+ WFNSHP GGDP+L NFQ+WA    + G+VHPRDA+AW+TA
Sbjct:    3 RVDQAEPLANRSNGWRYRGPRGVTYRRQAVFGTGFRVRISFPSSARPGHMWFNSHPLGGDPNLYNFQTWARTVLQSGMVHPRDAEAWRTA 92          
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Match: A0A6H5KTC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC4_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 3.630e-38
Identity = 72/120 (60.00%), Postives = 83/120 (69.17%), Query Frame = 1
Query:   28 MLRGLKERVASSSTGPSPPGYRWCCVEQVDQAEPLPNRSNGWRYNGPR-GVMYRRQAVFGTGYRVR--FSATSRGPGYRWFNSHPAGGDPSLENFQSWATRTWRRGLVHPRDADAWKTAF 378
            MLR  K+R   ++     P YRWC VEQVD+A P+  RSNGWRY GPR G  YRRQAVFG G+R+   F     GPG+RWFNSHP GGDP L +FQ+WA    RR LVHPRDADAW+ AF
Sbjct:    1 MLRHYKKRHYYAAATARRPEYRWCGVEQVDEAVPMSTRSNGWRYLGPREGETYRRQAVFGAGFRLHLPFPRLPPGPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHPRDADAWRAAF 120          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1808.5193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSM3_9PHAE1.500e-7496.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS9_9PHAE4.970e-4566.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6B4_9PHAE4.920e-4363.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE84_9PHAE7.210e-4368.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDB7_9PHAE1.770e-4266.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQN9_ECTSI1.780e-4268.57Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K992_9PHAE5.410e-4166.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU52_9PHAE5.800e-4155.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR88_9PHAE6.220e-3971.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTC4_9PHAE3.630e-3860.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1808contigL-elsbetiae_contig1808:7560..7937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue1.3e-36
Seed eggNOG ortholog2880.D7FQN9
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3IK@1,2SAKM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size378
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.6396618-UTR-L-elsbetiae_contig1808:7559..75861622815753.6396618-UTR-L-elsbetiae_contig1808:7559..7586Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1808 7560..7586 +
1691683080.7231212-UTR-L-elsbetiae_contig1808:7559..75861691683080.7231212-UTR-L-elsbetiae_contig1808:7559..7586Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1808 7560..7586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.6556838-CDS-L-elsbetiae_contig1808:7586..79371622815753.6556838-CDS-L-elsbetiae_contig1808:7586..7937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1808 7587..7937 +
1691683080.732903-CDS-L-elsbetiae_contig1808:7586..79371691683080.732903-CDS-L-elsbetiae_contig1808:7586..7937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1808 7587..7937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1808.5193.1prot_L-elsbetiae_contig1808.5193.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1808 7587..7937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1808.5193.1

>prot_L-elsbetiae_contig1808.5193.1 ID=prot_L-elsbetiae_contig1808.5193.1|Name=mRNA_L-elsbetiae_contig1808.5193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MLRGLKERVASSSTGPSPPGYRWCCVEQVDQAEPLPNRSNGWRYNGPRGV
MYRRQAVFGTGYRVRFSATSRGPGYRWFNSHPAGGDPSLENFQSWATRTW
RRGLVHPRDADAWKTAF
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mRNA from alignment at L-elsbetiae_contig1808:7560..7937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1808.5193.1 ID=mRNA_L-elsbetiae_contig1808.5193.1|Name=mRNA_L-elsbetiae_contig1808.5193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig1808:7560..7937+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTCCTCCAAACTATAGATACAAGAGATGTTGCGTGGTCTCAAAGAAAG GGTTGCCTCATCGTCAACTGGGCCATCACCACCAGGATACAGATGGTGCT GCGTGGAGCAGGTGGATCAGGCCGAACCCCTGCCAAACAGGAGTAACGGG TGGCGCTACAACGGGCCACGAGGGGTAATGTATCGTCGACAGGCGGTCTT CGGAACAGGATACAGGGTTCGTTTCTCGGCCACGTCCCGTGGACCGGGAT ATAGATGGTTCAATTCGCACCCGGCCGGCGGTGATCCTTCACTGGAAAAC TTTCAATCCTGGGCAACAAGGACGTGGCGGCGCGGTTTGGTCCACCCGAG AGACGCAGATGCTTGGAAAACCGCCTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1808:7560..7937+

>mRNA_L-elsbetiae_contig1808.5193.1 ID=mRNA_L-elsbetiae_contig1808.5193.1|Name=mRNA_L-elsbetiae_contig1808.5193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig1808:7560..7937+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCGTGGTCTCAAAGAAAGGGTTGCCTCATCGTCAACTGGGCCATC
ACCACCAGGATACAGATGGTGCTGCGTGGAGCAGGTGGATCAGGCCGAAC
CCCTGCCAAACAGGAGTAACGGGTGGCGCTACAACGGGCCACGAGGGGTA
ATGTATCGTCGACAGGCGGTCTTCGGAACAGGATACAGGGTTCGTTTCTC
GGCCACGTCCCGTGGACCGGGATATAGATGGTTCAATTCGCACCCGGCCG
GCGGTGATCCTTCACTGGAAAACTTTCAATCCTGGGCAACAAGGACGTGG
CGGCGCGGTTTGGTCCACCCGAGAGACGCAGATGCTTGGAAAACCGCCTT
CATGTTGCGTGGTCTCAAAGAAAGGGTTGCCTCATCGTCAACTGGGCCAT
CACCACCAGGATACAGATGGTGCTGCGTGGAGCAGGTGGATCAGGCCGAA
CCCCTGCCAAACAGGAGTAACGGGTGGCGCTACAACGGGCCACGAGGGGT
AATGTATCGTCGACAGGCGGTCTTCGGAACAGGATACAGGGTTCGTTTCT
CGGCCACGTCCCGTGGACCGGGATATAGATGGTTCAATTCGCACCCGGCC
GGCGGTGATCCTTCACTGGAAAACTTTCAATCCTGGGCAACAAGGACGTG
GCGGCGCGGTTTGGTCCACCCGAGAGACGCAGATGCTTGGAAAACCGCCT
TC
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