mRNA_L-elsbetiae_contig1808.5192.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1808.5192.1
Unique NamemRNA_L-elsbetiae_contig1808.5192.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1808.5192.1 vs. uniprot
Match: A0A6H5KHL0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL0_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.730e-58
Identity = 141/183 (77.05%), Postives = 154/183 (84.15%), Query Frame = 3 
Query:   87 RAGKTFTEMEGLVNRLADAREACLTKSNAPPAIEGRRQVGSVMSELALNLQQQQQEQAIRAFPLFRRVFLSDEKILGCYHPLVAEDVVNLAEIMTALGKLPQAEELHRRALKIRKYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGELRSASRAR----AMSKRSGGGGSWGSKEW 623
            ++GKT+TEMEGLV RLA+AREA LT SNAPPAIEGRRQVGSVMSELAL L+QQ+QEQA RAFPLFRRVFLSDEKILGCYHPLVAEDVVNLAEIMTAL KLPQAEELHRRALKIR+YT    XXXXXXXXXXXXXXXXXXXXX         AGE+RS +R+R    + S+RS    SWGSK+W
Sbjct: 2901 QSGKTYTEMEGLVIRLANAREARLTVSNAPPAIEGRRQVGSVMSELALALRQQKQEQATRAFPLFRRVFLSDEKILGCYHPLVAEDVVNLAEIMTALNKLPQAEELHRRALKIRQYTLGEDXXXXXXXXXXXXXXXXXXXXXHAGDLLLRRAGEIRSPARSRGRMKSYSRRSS---SWGSKDW 3080
[Close]
BLAST of mRNA_L-elsbetiae_contig1808.5192.1 vs. uniprot
Match: A0A6H5KEH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH7_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.030e-35
Identity = 77/97 (79.38%), Postives = 85/97 (87.63%), Query Frame = 3 
Query:   87 RAGKTFTEMEGLVNRLADAREACLTKSNAPPAIEGRRQVGSVMSELALNLQQQQQEQAIRAFPLFRRVFLSDEKILGCYHPLVAEDVVNLAEIMTAL 377
            ++GKT+TEMEGLV RLA+AREA LT  +APPAIE    VGSVMS+LAL L+QQ+QEQA RAFPLFRRVFLSD KILGCYHPLVAEDVVNLA IMTAL
Sbjct:  189 QSGKTYTEMEGLVIRLANAREARLTGCDAPPAIE----VGSVMSDLALALRQQKQEQATRAFPLFRRVFLSDAKILGCYHPLVAEDVVNLA-IMTAL 280
[Close]
BLAST of mRNA_L-elsbetiae_contig1808.5192.1 vs. uniprot
Match: D7G3Y1_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y1_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.280e-21
Identity = 54/66 (81.82%), Postives = 61/66 (92.42%), Query Frame = 3 
Query:   87 RAGKTFTEMEGLVNRLADAREACLTKSNAPPAIEGRRQVGSVMSELALNLQQQQQEQAIRAFPLFR 284
            ++GKT+TEMEGLV RLA+AREA LT SNAPPAIEGRRQVGSVMS+LAL L+QQ+QEQA RAFPLFR
Sbjct: 2412 QSGKTYTEMEGLVIRLANAREARLTVSNAPPAIEGRRQVGSVMSDLALALRQQKQEQATRAFPLFR 2477
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1808.5192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KHL0_9PHAE1.730e-5877.05Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KEH7_9PHAE1.030e-3579.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3Y1_ECTSI2.280e-2181.82Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1808contigL-elsbetiae_contig1808:259..3729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog2880.D7G3Y1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-19_000890.1
Exons5
Model size641
Cds size531
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1808.5192.1prot_L-elsbetiae_contig1808.5192.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1808 369..3729 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.549642-UTR-L-elsbetiae_contig1808:258..3681622815753.549642-UTR-L-elsbetiae_contig1808:258..368Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1808 259..368 +
1691683080.6553817-UTR-L-elsbetiae_contig1808:258..3681691683080.6553817-UTR-L-elsbetiae_contig1808:258..368Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1808 259..368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.5655046-CDS-L-elsbetiae_contig1808:368..4461622815753.5655046-CDS-L-elsbetiae_contig1808:368..446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1808 369..446 +
1691683080.67006-CDS-L-elsbetiae_contig1808:368..4461691683080.67006-CDS-L-elsbetiae_contig1808:368..446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1808 369..446 +
1622815753.5756838-CDS-L-elsbetiae_contig1808:969..10641622815753.5756838-CDS-L-elsbetiae_contig1808:969..1064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1808 970..1064 +
1691683080.6790392-CDS-L-elsbetiae_contig1808:969..10641691683080.6790392-CDS-L-elsbetiae_contig1808:969..1064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1808 970..1064 +
1622815753.5853841-CDS-L-elsbetiae_contig1808:1867..19611622815753.5853841-CDS-L-elsbetiae_contig1808:1867..1961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1808 1868..1961 +
1691683080.687894-CDS-L-elsbetiae_contig1808:1867..19611691683080.687894-CDS-L-elsbetiae_contig1808:1867..1961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1808 1868..1961 +
1622815753.594817-CDS-L-elsbetiae_contig1808:2861..29311622815753.594817-CDS-L-elsbetiae_contig1808:2861..2931Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1808 2862..2931 +
1691683080.698649-CDS-L-elsbetiae_contig1808:2861..29311691683080.698649-CDS-L-elsbetiae_contig1808:2861..2931Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1808 2862..2931 +
1622815753.6044471-CDS-L-elsbetiae_contig1808:3535..37291622815753.6044471-CDS-L-elsbetiae_contig1808:3535..3729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1808 3536..3729 +
1691683080.7118177-CDS-L-elsbetiae_contig1808:3535..37291691683080.7118177-CDS-L-elsbetiae_contig1808:3535..3729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1808 3536..3729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1808.5192.1

>prot_L-elsbetiae_contig1808.5192.1 ID=prot_L-elsbetiae_contig1808.5192.1|Name=mRNA_L-elsbetiae_contig1808.5192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
MEGLVNRLADAREACLTKSNAPPAIEGRRQVGSVMSELALNLQQQQQEQA
IRAFPLFRRVFLSDEKILGCYHPLVAEDVVNLAEIMTALGKLPQAEELHR
RALKIRKYTLGEDHPSTVASLSHLAVTLRAQGKTRKGDSLLRHAGELRSA
SRARAMSKRSGGGGSWGSKEWEGGDED
back to top

mRNA from alignment at L-elsbetiae_contig1808:259..3729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1808.5192.1 ID=mRNA_L-elsbetiae_contig1808.5192.1|Name=mRNA_L-elsbetiae_contig1808.5192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3471bp|location=Sequence derived from alignment at L-elsbetiae_contig1808:259..3729+ (Laminarionema elsbetiae ELsaHSoW15)
ATTCATGTTGATGATGATGACGATGATGATGATGATGATGGATTGGTGCT
GAGCTCTGTTTTTTTTGTTTTCCGTTTTATTTTTGGCGGGCAGGTAAAAC
CTTCACGGAGATGGAAGGACTGGTCAACAGGCTCGCCGACGCGCGCGAGG
CGTGCCTCACCAAGTCCAACGCCCCTCCCGCCATAGAGGTGTTGTTTTGG
TTGCTGCTTCTGCTGCTGCTGTTGTTATTGTTGCTGTTGTTGTTGTTGCT
CGCGTTTATGTAGTCACCAAGTCCAACGCCCCTCCCGCCCTAGAGGTATT
GTTGTGGTTGTTGCTGCTGCTGTTGTTATTGTTGCTGGTGTTGTTGTTGT
TATTGTTGTTGTTGCTTTTTTTGTTGTTGTAGTTGCTCGCGTGTATGTAT
GTATGTATAGCTGTTTGCCAAAGAATACCGGCCCGTGGCCATAGAGTGCT
TGGGCCGTCAGAAGATCCGAAATCCTCAATATTTGTTAGCCTTGTCCCAC
ATTGTCCGGTCTCAACGTCGGTAGGTATACCGACGGTGATATTTTTTCCA
GAACTACAACTGCATGTATGATGCAGTTGACGTGGCATACCCACAAGAGG
GATTTTATCGTATGTGTGTGTGTGTTTTTTTTGGTTGTTGCAAGTGATGT
GGCATACTCACACGGGGGCTTTTTTTGTGTGTTTTTATTTTATTTTATTA
CTCCGGGGCAGGGCCGGCGGCAGGTGGGATCCGTCATGTCAGAGCTGGCG
CTCAACCTGCAGCAGCAGCAGCAGGAGCAGGCTATCCGAGCGTTTCCGCT
GTTCAGGTGAGCGGTGAAGAAGTCTCGCTCAAGGCGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGGATCAGTTGGCCACAGTTTTTGTGTCGTTGTG
GCAGAGCAGTGCATGCCGGTGCTCTCTCCTCTCTCTCGGCACCCACCAAG
CGATGGCGAGGATACCGGCACCAGGCTCACTGCTGTACGTACGTAGATAC
ATGAAAGTACAGTGCGAGGGCACACACTCTAGGTGCACTACTACACGTAG
TACATACACACATAAGTGAAATAATATCCTACAGTCCTACAGCCGATAGT
GAACTGAGGGGGAGGGGGGGGCATGCCTGGCTGACCCACGTGCAGATGCG
ACACAGCGCAGTTTTTGTGTCGCTGGGGAAATGGATCACAGCAGCATGTC
TAAGCCTCCTGTGTGACCCCGGTTGGGTCGTCTAGCTAGTCATAGTGGAG
GAAGGGGGCCAGTGGGGCAGGCAGACGAATCAGCCAATAATGGGAGGGAA
AAAATTAAAGAGTAATAAGCGCTTTTATTCCGCTTGGCCAGGGTCCTGCC
TCGAAGAGGGTCAGGTCAGCCATGTACATGCACGGGCGCTTCATCTGTGC
TGTGCTGTGCTGTGCTGTGGAGCGATGCCGTGCCGTGCCTACCTCTCGCG
TTGTATTTAACCCCCCCCCTCCCCCTTCTCCATAACTCCCGGCTGTGCCC
CCGTGACCCTCTCGTCTAATGGCGCGTGGCATGAATTCGAATTCGGGATT
GAATTGGATTGGATTGGATTGGCACAACGCCACGCTGCCGCTATTCTCGT
GGGCCCCAGGCGCGTCTTTCTGTCAGACGAGAAGATTCTGGGGTGCTATC
ACCCCCTCGTGGCCGAGGACGTGGTGAACCTCGCCGAGATCATGACCGCC
CTGGTGAGGAAGGAAGGGTTAAAGGTGTATAGCCGTGACTTGACTTGCTG
TGTTGGTGCTCGGCCGTGCACGCGTCCGTGGGGTCTTGCCTCTGGGTGTT
GTCTTTTGTGCCAAGACTCAAGGGATTCGTGGCACGCAGTTACGTGATTG
ATCACGGGATAACTTACCCCTAAAAAGGGTATGCTGAAAAATAGATAGGA
TGAGAAGCCCGAATTGGATATCGTGCATGCTGAAAAATGGATAGGGTGAG
AAGCCTGCCTTGGATATCGTGCCCACGTGGCCAGTTCCAGTTCTGTCACA
CGTTTTTTCTCGGCAGCAACCAGAGTACTCCGCCCCGTTTTATCGTTCGA
TCGTCGTATAACAGTAGTAGGTATACGTCGATTACGGCTCGCCGGACGAT
AAGATAAGAGCCCGTCGCGGCGATGCGTGTTCCGTGCAATCGATCAACAC
CGCCCTCTCTTGTTGGACCGTCAAAGCCCCGACGCACATGAAAACCTCCC
GTCGCCGTGGTTTTCTTCGCAAGAAATGCGATGGTGTGCTGCAGGGCCCC
CAGTTATGGAAAGTGTCTGTGGGAGATTTTTCACTCTACATATTTTCTAG
ATAAATACCCCCCCGCGCTGCCCTCACAGCTCTTTTTTTAGAATTAGGGG
GCTCTATGCAGGAAGCCTAATAGTCCACCCAGTCCACCCCGCGCCCCGTG
AATGCATGGCTCTGAGTAGGCTATGTAACGCTACATGTGCATATATATAT
AACACCGTCGCTTTTTCCGTCGCTTTTTGCATACCTACCGACCTACCGAC
CTACCCTTACTCACCTGCGTTGCCCCCCCCTCGTGCTCCTTCCTCCCTAC
GCCCGGGACGCCTGTCCAACTAACCACACGGATCCCCCCCCAAACAACTT
CAGGGCAAGCTCCCGCAAGCCGAGGAGCTGCACCGCCGGGCGCTCAAGAT
CCGCAAGTACACGCTGGGCGAAGGTGACTTGATCGAACGCCACGAGACAG
ACAGACAGGCAGACAGACTAATCGACGTCCAGATCAGACAGGCTGATGGC
GCTAAGAGAGCCGGGGGGGGGGGGGGGGGGGGGGTGGGGGGAGAAGAAAA
AAGATATATTTTTTTTTTTTTTTATATGGGGTTAAAAAAAAAAAGGAAAT
TTGGGGGGATAAAAANNNNNNNNNNAACAGACAGAGCGGCGCACGAATTA
CTCGATCCCCAAAAGGGGGGGGTGTAGGGGTGTGGTGTGGGGGGGGGGGG
GGGGGGGGGGTGTATTGGTGCAAGAGCATAAATGTATATATTTATTTATT
TTTAATTGAGTTTACGAAATAAATGTAGATCTGGATGGATAAATAATCTA
GATGAGCTGCAGCTGTGCTACGCGCACGTGCTTACGTTGCCGCGCCGATA
GGCTTGCGTAAGTCCCGACACTGCTGCCTCGATGCTATTTACTACCCTCC
CCTGCGTCTCACTCACTCACTCACTCACTCACTCCTCTCTCTCTCTCCCC
CCCCCTCTCTCTCCCTCTCCATCTCCCCCTCCCTCTCCCTCTCTCCTCCC
TTCTCGTGCTCCGCCGTCTCCGTCCAGACCACCCGTCCACGGTGGCGAGC
CTGAGCCACCTGGCGGTGACCCTGCGCGCACAGGGCAAGACCCGCAAGGG
CGACAGCCTCCTCCGACACGCCGGAGAGCTACGCTCGGCCTCTCGCGCCC
GGGCGATGTCCAAGAGGAGCGGCGGCGGCGGTAGCTGGGGCAGCAAGGAG
TGGGAGGGGGGCGACGAGGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1808:259..3729+

>mRNA_L-elsbetiae_contig1808.5192.1 ID=mRNA_L-elsbetiae_contig1808.5192.1|Name=mRNA_L-elsbetiae_contig1808.5192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig1808:259..3729+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGGACTGGTCAACAGGCTCGCCGACGCGCGCGAGGCGTGCCTCAC
CAAGTCCAACGCCCCTCCCGCCATAGAGATGGAAGGACTGGTCAACAGGC
TCGCCGACGCGCGCGAGGCGTGCCTCACCAAGTCCAACGCCCCTCCCGCC
ATAGAGGGCCGGCGGCAGGTGGGATCCGTCATGTCAGAGCTGGCGCTCAA
CCTGCAGCAGCAGCAGCAGGAGCAGGCTATCCGAGCGTTTCCGCTGTTCA
GGGCCGGCGGCAGGTGGGATCCGTCATGTCAGAGCTGGCGCTCAACCTGC
AGCAGCAGCAGCAGGAGCAGGCTATCCGAGCGTTTCCGCTGTTCAGGCGC
GTCTTTCTGTCAGACGAGAAGATTCTGGGGTGCTATCACCCCCTCGTGGC
CGAGGACGTGGTGAACCTCGCCGAGATCATGACCGCCCTGGCGCGTCTTT
CTGTCAGACGAGAAGATTCTGGGGTGCTATCACCCCCTCGTGGCCGAGGA
CGTGGTGAACCTCGCCGAGATCATGACCGCCCTGGGCAAGCTCCCGCAAG
CCGAGGAGCTGCACCGCCGGGCGCTCAAGATCCGCAAGTACACGCTGGGC
GAAGGGCAAGCTCCCGCAAGCCGAGGAGCTGCACCGCCGGGCGCTCAAGA
TCCGCAAGTACACGCTGGGCGAAGACCACCCGTCCACGGTGGCGAGCCTG
AGCCACCTGGCGGTGACCCTGCGCGCACAGGGCAAGACCCGCAAGGGCGA
CAGCCTCCTCCGACACGCCGGAGAGCTACGCTCGGCCTCTCGCGCCCGGG
CGATGTCCAAGAGGAGCGGCGGCGGCGGTAGCTGGGGCAGCAAGGAGTGG
GAGGGGGGCGACGAGGACACCACCCGTCCACGGTGGCGAGCCTGAGCCAC
CTGGCGGTGACCCTGCGCGCACAGGGCAAGACCCGCAAGGGCGACAGCCT
CCTCCGACACGCCGGAGAGCTACGCTCGGCCTCTCGCGCCCGGGCGATGT
CCAAGAGGAGCGGCGGCGGCGGTAGCTGGGGCAGCAAGGAGTGGGAGGGG
GGCGACGAGGAC
back to top