mRNA_L-elsbetiae_contig18076.5191.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18076.5191.1
Unique NamemRNA_L-elsbetiae_contig18076.5191.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18076.5191.1 vs. uniprot
Match: D7FQ12_ECTSI (Alkaline phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ12_ECTSI)

HSP 1 Score: 316 bits (809), Expect = 1.270e-103
Identity = 159/184 (86.41%), Postives = 174/184 (94.57%), Query Frame = 1 
Query:    1 RMPWAGLVKTYNSNAQTPDSAGTATAMNSGHKTKSGVIGVSEDVIRGDCSTLPGNELELIAQQAKAVNKKIGVVSTARITHATPAGVYARSVDRGYEAGVPEGCTEQVDIAQQQLLMSMVGDDAWVDFAAGGGRRNFYDYTEVDATGEPGDRIDGRNLIAEANDAGVMTAQTRDEFMALDFEDG 552
            +MPWAGLVKTYN NAQTPDSAGTATAMNSGHKTK+GVIGVSEDVIRGDCSTLPGNELELIAQQAKA+NKK+GVVS+ARITHATPAGVYARSVDR YEA VPEGCTEQVDIAQQ LL+SMVGDD WVDFAAGGG+ +FY+ TE+DA GE G+R+DGR+LIAEA+ AGVMTAQT+DEFMALDFEDG
Sbjct:   86 KMPWAGLVKTYNVNAQTPDSAGTATAMNSGHKTKAGVIGVSEDVIRGDCSTLPGNELELIAQQAKAMNKKVGVVSSARITHATPAGVYARSVDRNYEADVPEGCTEQVDIAQQ-LLLSMVGDDGWVDFAAGGGKASFYNATELDAMGESGNRVDGRDLIAEASTAGVMTAQTKDEFMALDFEDG 268
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BLAST of mRNA_L-elsbetiae_contig18076.5191.1 vs. uniprot
Match: A0A2G6CFR4_9RHOB (Alkaline phosphatase n=2 Tax=Rhodobacterales bacterium TaxID=1948890 RepID=A0A2G6CFR4_9RHOB)

HSP 1 Score: 179 bits (453), Expect = 1.310e-50
Identity = 103/178 (57.87%), Postives = 117/178 (65.73%), Query Frame = 1 
Query:    4 MPWAGLVKTYNSNAQTPDSAGTATAMNSGHKTKSGVIGVSEDVIRGDCSTLPGNELELIAQQAKAVNKKIGVVSTARITHATPAGVYARSVDRGYEAGVPEGCTEQVDIAQQQLLMSMVGDDAWVDFAAGGGRRNFYDYTEVDATGEPGDRIDGRNLIAEANDAGVMTAQTRDEFMAL 537
             P+  L KTYN NAQTPDSAGTATAM SG KTK+GVIGV EDV+RGDC+TLPGNE+  + +   A+ K  GVVSTARITHATPA  YA SVDR +E  +PEGCTEQ DIA Q L     G    VD A GGGRRNF      D  G+ G R  G NL+    +AGV  A  +  F AL
Sbjct:   92 FPYLALAKTYNVNAQTPDSAGTATAMMSGVKTKAGVIGVDEDVVRGDCTTLPGNEVATMNEIMSAMGKATGVVSTARITHATPATGYAHSVDRNFEYKLPEGCTEQADIATQLLEAMKSGV---VDVALGGGRRNFIPSDVTDGEGKIGKRAPGDNLLPAFEEAGVAYAWDQATFDAL 266
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BLAST of mRNA_L-elsbetiae_contig18076.5191.1 vs. uniprot
Match: A0A369QYQ8_9RHOB (Alkaline phosphatase n=2 Tax=Rhodovulum sp. 12E13 TaxID=2203891 RepID=A0A369QYQ8_9RHOB)

HSP 1 Score: 177 bits (449), Expect = 4.870e-50
Identity = 98/180 (54.44%), Postives = 120/180 (66.67%), Query Frame = 1 
Query:    7 PWAGLVKTYNSNAQTPDSAGTATAMNSGHKTKSGVIGVSEDVIRGDCSTLPGNELELIAQQAKAVNKKIGVVSTARITHATPAGVYARSVDRGYEAGVPEGCTEQVDIAQQQLLMSMVGDDAWVDFAAGGGRRNFYDYTEVDATGEPGDRIDGRNLIAEANDAGVMTAQTRDEFMALDFE 546
            P   LVKTYN N+QTPDSAGT TAM +G KT  GV+GV+ +V+RGDCSTLPGN +  I++ A  + K +G +STARITHATPA +YA++VDR +E  VPEGCTEQ DIA Q LL +M G    +D A GGGRR+F         G  G R DGRNLI EA +AG   A   + F A   +
Sbjct:   89 PNLALVKTYNVNSQTPDSAGTGTAMMAGVKTNIGVVGVNSNVVRGDCSTLPGNTVTAISEIADGMGKSVGAISTARITHATPASMYAKTVDRNFEDSVPEGCTEQTDIASQ-LLEAMTG--GLIDIAMGGGRRHFVPEGVEVEEGTGGRRADGRNLIEEAQEAGAYYAWNMETFAAAPLD 265
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BLAST of mRNA_L-elsbetiae_contig18076.5191.1 vs. uniprot
Match: A0A6N6JIC3_9RHOB (Alkaline phosphatase n=1 Tax=Litoreibacter roseus TaxID=2601869 RepID=A0A6N6JIC3_9RHOB)

HSP 1 Score: 176 bits (445), Expect = 2.030e-49
Identity = 98/181 (54.14%), Postives = 117/181 (64.64%), Query Frame = 1 
Query:    4 MPWAGLVKTYNSNAQTPDSAGTATAMNSGHKTKSGVIGVSEDVIRGDCSTLPGNELELIAQQAKAVNKKIGVVSTARITHATPAGVYARSVDRGYEAGVPEGCTEQVDIAQQQLLMSMVGDDAWVDFAAGGGRRNFYDYTEVDATGEPGDRIDGRNLIAEANDAGVMTAQTRDEFMALDFE 546
             P   LVKTYN NAQTPDSAGT TAM SG KTK+GV+GV+E VIRGDC+T+ GN +  + +    + K  G+VSTARITHATPA  YA+SVDR +E  VPE CT+Q DIA+Q L     G    +D A GGGRRNF      D   + G R DGRNLI EA  AGV  A   + F A+  +
Sbjct:   92 FPNLALVKTYNVNAQTPDSAGTGTAMMSGIKTKAGVVGVNEKVIRGDCTTIEGNTVASLNEIMSEMGKATGIVSTARITHATPASAYAKSVDRNFEEAVPEDCTQQADIARQLLSAMAAGT---IDVAMGGGRRNFLPTDTPDDEQDMGRREDGRNLITEAQHAGVSYAWNDETFAAMPLD 269
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BLAST of mRNA_L-elsbetiae_contig18076.5191.1 vs. uniprot
Match: A0A7S9QEU7_9RHOB (Alkaline phosphatase n=1 Tax=Pontivivens ytuae TaxID=2789856 RepID=A0A7S9QEU7_9RHOB)

HSP 1 Score: 175 bits (443), Expect = 4.140e-49
Identity = 100/183 (54.64%), Postives = 115/183 (62.84%), Query Frame = 1 
Query:    4 MPWAGLVKTYNSNAQTPDSAGTATAMNSGHKTKSGVIGVSEDVIRGDCSTLPGNELELIAQQAKAVNKKIGVVSTARITHATPAGVYARSVDRGYEAGVPEGCTEQVDIAQQQLLMSMVGDDAWVDFAAGGGRRNFYDYTEVDATGEPGDRIDGRNLIAEANDAGVMTAQTRDEFMALDFEDG 552
            MP  GLVKTYN NAQTPDSAGT TAM++G KT +GVIGV EDV+RGDCST+PGNE+  IA     V + +GVVSTARITHATPA  YA S DR +E  VPEGC    DIA Q +     G    +D A GGGRR+F      DA G  G R DG NL+  A   G      ++ F ALD   G
Sbjct:   93 MPNLGLVKTYNVNAQTPDSAGTGTAMHAGVKTDAGVIGVDEDVVRGDCSTVPGNEVTSIAAMMTDVGRSVGVVSTARITHATPASSYAVSADRNFEDSVPEGCAH-TDIATQLIDAMEAGT---IDLAMGGGRRHFLPEDVTDAEGSNGRRADGTNLVERAESIGATVVFDQEGFDALDLTAG 271
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BLAST of mRNA_L-elsbetiae_contig18076.5191.1 vs. uniprot
Match: A0A3D9BZ34_9RHOB (Alkaline phosphatase n=1 Tax=Rhodosalinus sediminis TaxID=1940533 RepID=A0A3D9BZ34_9RHOB)

HSP 1 Score: 172 bits (435), Expect = 6.050e-48
Identity = 98/178 (55.06%), Postives = 118/178 (66.29%), Query Frame = 1 
Query:    4 MPWAGLVKTYNSNAQTPDSAGTATAMNSGHKTKSGVIGVSEDVIRGDCSTLPGNELELIAQQAKAVNKKIGVVSTARITHATPAGVYARSVDRGYEAGVPEGCTEQVDIAQQQLLMSMVGDDAWVDFAAGGGRRNFYDYTEVDATGEPGDRIDGRNLIAEAN-DAGVMTAQTRDEFMA 534
             P+  LVKTYN NAQTPDSAGT TAM +G KT  G+IGV  DV+RGDCSTLPGN +  + + A  + K  G+VSTARITHATPA  YA++VDR +EA VPEGC  Q DIA Q L+ +M  +   +D A GGGRRNF D +     G  G R DGRNLI EA  + G   A  ++ F A
Sbjct:   91 FPYLALVKTYNVNAQTPDSAGTGTAMMAGVKTNIGIIGVDSDVVRGDCSTLPGNTVASMNEIAHEMGKATGIVSTARITHATPASAYAKTVDRNFEATVPEGCDTQTDIANQ-LIEAM--ESGLIDVAMGGGRRNFVDASMEIEEGTTGRREDGRNLIEEAQAELGAHYAWNQESFEA 265
[Close]
BLAST of mRNA_L-elsbetiae_contig18076.5191.1 vs. uniprot
Match: A0A7W6H240_9RHOB (Alkaline phosphatase n=1 Tax=Sulfitobacter undariae TaxID=1563671 RepID=A0A7W6H240_9RHOB)

HSP 1 Score: 172 bits (435), Expect = 6.160e-48
Identity = 100/181 (55.25%), Postives = 117/181 (64.64%), Query Frame = 1 
Query:    4 MPWAGLVKTYNSNAQTPDSAGTATAMNSGHKTKSGVIGVSEDVIRGDCSTLPGNELELIAQQAKAVNKKIGVVSTARITHATPAGVYARSVDRGYEAGVPEGCTEQVDIAQQQLLMSMVGDDAWVDFAAGGGRRNFYDYTEVDATGEPGDRIDGRNLIAEANDAGVMTAQTRDEFMALDFE 546
             P   LVKTYN+N QTPDSAGT TA+ SG KTK+GVIGV+E+V RGDC+T+PGNE+  + +   A+ K  GVVSTARITHATPA  YA S DR +E  VPEGCT QVDIAQQ +     G    VD A GGGRRNF      D  G+ G R DG NLI      GV  A   + F AL+ +
Sbjct:   92 FPNLALVKTYNTNGQTPDSAGTGTAIMSGVKTKAGVIGVNENVNRGDCATVPGNEVATMNEIMAAMGKATGVVSTARITHATPATSYASSADRNWEESVPEGCTTQVDIAQQLVEAIKNGT---VDVAMGGGRRNFIGTDVTDEEGKTGRRADGVNLIEALKAEGVQYAWGDESFGALNLD 269
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BLAST of mRNA_L-elsbetiae_contig18076.5191.1 vs. uniprot
Match: A0A557RJE9_9GAMM (Alkaline phosphatase n=5 Tax=Proteobacteria TaxID=1224 RepID=A0A557RJE9_9GAMM)

HSP 1 Score: 171 bits (432), Expect = 1.660e-47
Identity = 98/173 (56.65%), Postives = 117/173 (67.63%), Query Frame = 1 
Query:    4 MPWAGLVKTYNSNAQTPDSAGTATAMNSGHKTKSGVIGVSEDVIRGDCSTLPGNELELIAQQAKAVNKKIGVVSTARITHATPAGVYARSVDRGYEAGVPEGCTEQVDIAQQQLLMSMVGDDAWVDFAAGGGRRNFYDYTEVDATGEPGDRIDGRNLIAEANDAGVMTAQTRD 522
             P  GLVKTYN N+QTPDSAGT TAM SG KT  GV+GV+ +V RGDCSTLPGNE+   ++    + K++G+VSTARITHATP   YA SVDR + A +PEGC  Q  IA+Q LL +M   +  VD A GGGRRNF      D  G+ G+R DGRNLIAEA + GV  A   D
Sbjct:   91 FPSLGLVKTYNVNSQTPDSAGTGTAMMSGVKTDIGVLGVNANVDRGDCSTLPGNEVANASEVFTEMGKEVGIVSTARITHATPGAAYAHSVDRNFAATLPEGCDTQKTIAEQ-LLEAMY--EGRVDVAMGGGRRNFITGDMTDNEGDSGNREDGRNLIAEAQENGVAYAWNTD 260
[Close]
BLAST of mRNA_L-elsbetiae_contig18076.5191.1 vs. uniprot
Match: A0A3P5X712_9RHOB (Alkaline phosphatase n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A3P5X712_9RHOB)

HSP 1 Score: 166 bits (421), Expect = 9.580e-46
Identity = 99/184 (53.80%), Postives = 118/184 (64.13%), Query Frame = 1 
Query:    4 MPWAGLVKTYNSNAQTPDSAGTATAMNSGHKTKSGVIGVSEDVIRGDCSTLPGNELELIAQQAKAVNKKIGVVSTARITHATPAGVYARSVDRGYEAGVPEGCTEQVDIAQQQLLMSMVGDDAWVDFAAGGGRRNFYDYTEVDATGEPGDRIDGRNLIAEA-NDAGVMTAQTRDEFMALDFEDG 552
             P  GL+KTYN NAQTPDSAGT TAM +G KTK+GVIG +E+V RGDC+TL GN +  I + A  + K  GV+STARITHATPA  YA++VDR +EA VPEGC  QVDIAQQ +    VG    +  A GGG RNF+         E G R DG+NLI  A N+ G   A     F A+D E G
Sbjct:   94 FPSLGLIKTYNVNAQTPDSAGTGTAMMAGIKTKAGVIGANENVTRGDCATLEGNTVTPITKVAADMGKAAGVISTARITHATPASGYAQTVDRNFEATVPEGCESQVDIAQQLIDAMEVGT---IHVAMGGGMRNFH-------ADEGGRREDGQNLIEIAQNELGAQFASDMASFEAVDLESG 267
[Close]
BLAST of mRNA_L-elsbetiae_contig18076.5191.1 vs. uniprot
Match: UPI0004DB590F (alkaline phosphatase n=1 Tax=Halomonas TaxID=2745 RepID=UPI0004DB590F)

HSP 1 Score: 166 bits (420), Expect = 9.620e-46
Identity = 96/173 (55.49%), Postives = 114/173 (65.90%), Query Frame = 1 
Query:    1 RMPWAGLVKTYNSNAQTPDSAGTATAMNSGHKTKSGVIGVSEDVIRGDCSTLPGNELELIAQQAKAVNKKIGVVSTARITHATPAGVYARSVDRGYEAGVPEGCTEQVDIAQQQLLMSMVGDDAWVDFAAGGGRRNFYDYTEVDATGEPGD---RIDGRNLIAEANDAGVMTA 510
            + P AGLVKTYN NAQTPDSAGT TAM SG KT  GV+GV+ +V RGDCSTLPGN +   ++    + K++G+V+T R+THATPA  YA SVDR +EA VPEGC+ Q DIA Q L     G    +D A GGGRR+F      DATG+ GD   R DGRNLI  A   G   A
Sbjct:   92 QFPSAGLVKTYNVNAQTPDSAGTGTAMMSGVKTDIGVLGVNANVNRGDCSTLPGNAVATASEVFTDLGKEVGIVTTTRVTHATPAAAYAHSVDRDFEASVPEGCSTQKDIADQLLEAMKAGR---IDVAMGGGRRSFL---PADATGDEGDDGRRQDGRNLIDAAKKMGAAYA 258
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18076.5191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ12_ECTSI1.270e-10386.41Alkaline phosphatase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A2G6CFR4_9RHOB1.310e-5057.87Alkaline phosphatase n=2 Tax=Rhodobacterales bacte... [more]
A0A369QYQ8_9RHOB4.870e-5054.44Alkaline phosphatase n=2 Tax=Rhodovulum sp. 12E13 ... [more]
A0A6N6JIC3_9RHOB2.030e-4954.14Alkaline phosphatase n=1 Tax=Litoreibacter roseus ... [more]
A0A7S9QEU7_9RHOB4.140e-4954.64Alkaline phosphatase n=1 Tax=Pontivivens ytuae Tax... [more]
A0A3D9BZ34_9RHOB6.050e-4855.06Alkaline phosphatase n=1 Tax=Rhodosalinus sedimini... [more]
A0A7W6H240_9RHOB6.160e-4855.25Alkaline phosphatase n=1 Tax=Sulfitobacter undaria... [more]
A0A557RJE9_9GAMM1.660e-4756.65Alkaline phosphatase n=5 Tax=Proteobacteria TaxID=... [more]
A0A3P5X712_9RHOB9.580e-4653.80Alkaline phosphatase n=2 Tax=Rhodobacterales TaxID... [more]
UPI0004DB590F9.620e-4655.49alkaline phosphatase n=1 Tax=Halomonas TaxID=2745 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18076contigL-elsbetiae_contig18076:65..1341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.4
Seed ortholog evalue4.4e-84
Seed eggNOG ortholog2880.D7FQ12
Preferred nameALPL
KEGG rclassRC00017
KEGG koko:K01077,ko:K21411
KEGG ReactionR02135,R04620
KEGG Pathwayko00730,ko00790,ko01100,ko02020,map00730,map00790,map01100,map02020
KEGG ModuleM00126
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000287,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001501,GO:0001503,GO:0001666,GO:0001958,GO:0002020,GO:0002237,GO:0003006,GO:0003674,GO:0003824,GO:0004035,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0005903,GO:0006139,GO:0006464,GO:0006470,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007584,GO:0007586,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009897,GO:0009986,GO:0009987,GO:0009991,GO:0010033,GO:0014070,GO:0016020,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016791,GO:0016817,GO:0016818,GO:0019362,GO:0019538,GO:0019637,GO:0019899,GO:0021915,GO:0022008,GO:0022414,GO:0030016,GO:0030154,GO:0031012,GO:0031090,GO:0031214,GO:0031224,GO:0031225,GO:0031226,GO:0031667,GO:0031960,GO:0032496,GO:0032501,GO:0032502,GO:0033273,GO:0033280,GO:0033993,GO:0034505,GO:0034641,GO:0035094,GO:0035264,GO:0035295,GO:0036075,GO:0036211,GO:0036293,GO:0036342,GO:0040007,GO:0042221,GO:0042476,GO:0042493,GO:0042578,GO:0042802,GO:0042803,GO:0043009,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043230,GO:0043231,GO:0043232,GO:0043292,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045017,GO:0046473,GO:0046474,GO:0046483,GO:0046486,GO:0046496,GO:0046658,GO:0046677,GO:0046872,GO:0046914,GO:0046983,GO:0048513,GO:0048545,GO:0048589,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051186,GO:0051384,GO:0051704,GO:0051707,GO:0051716,GO:0055086,GO:0060348,GO:0060349,GO:0060350,GO:0060429,GO:0065010,GO:0070482,GO:0070887,GO:0071310,GO:0071407,GO:0071529,GO:0071704,GO:0071944,GO:0072524,GO:0090407,GO:0098552,GO:0098588,GO:0098805,GO:0098852,GO:0098862,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901564,GO:1901576,GO:1901700
EggNOG free text desc.alkaline phosphatase activity
EggNOG OGsCOG1785@1,KOG4126@2759
EC3.1.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00537,ko01000,ko03400,ko04147
Exons3
Model size555
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18076.5191.1prot_L-elsbetiae_contig18076.5191.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18076 65..1338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.4674318-CDS-L-elsbetiae_contig18076:64..2801622815753.4674318-CDS-L-elsbetiae_contig18076:64..280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18076 65..280 -
1691683080.6092045-CDS-L-elsbetiae_contig18076:64..2801691683080.6092045-CDS-L-elsbetiae_contig18076:64..280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18076 65..280 -
1622815753.4801311-CDS-L-elsbetiae_contig18076:699..9331622815753.4801311-CDS-L-elsbetiae_contig18076:699..933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18076 700..933 -
1691683080.621712-CDS-L-elsbetiae_contig18076:699..9331691683080.621712-CDS-L-elsbetiae_contig18076:699..933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18076 700..933 -
1622815753.4930367-CDS-L-elsbetiae_contig18076:1236..13381622815753.4930367-CDS-L-elsbetiae_contig18076:1236..1338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18076 1237..1338 -
1691683080.6300552-CDS-L-elsbetiae_contig18076:1236..13381691683080.6300552-CDS-L-elsbetiae_contig18076:1236..1338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18076 1237..1338 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.5092926-UTR-L-elsbetiae_contig18076:1338..13411622815753.5092926-UTR-L-elsbetiae_contig18076:1338..1341Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18076 1339..1341 -
1691683080.639023-UTR-L-elsbetiae_contig18076:1338..13411691683080.639023-UTR-L-elsbetiae_contig18076:1338..1341Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18076 1339..1341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18076.5191.1

>prot_L-elsbetiae_contig18076.5191.1 ID=prot_L-elsbetiae_contig18076.5191.1|Name=mRNA_L-elsbetiae_contig18076.5191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
MPWAGLVKTYNSNAQTPDSAGTATAMNSGHKTKSGVIGVSEDVIRGDCST
LPGNELELIAQQAKAVNKKIGVVSTARITHATPAGVYARSVDRGYEAGVP
EGCTEQVDIAQQQLLMSMVGDDAWVDFAAGGGRRNFYDYTEVDATGEPGD
RIDGRNLIAEANDAGVMTAQTRDEFMALDFEDG*
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mRNA from alignment at L-elsbetiae_contig18076:65..1341-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18076.5191.1 ID=mRNA_L-elsbetiae_contig18076.5191.1|Name=mRNA_L-elsbetiae_contig18076.5191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1277bp|location=Sequence derived from alignment at L-elsbetiae_contig18076:65..1341- (Laminarionema elsbetiae ELsaHSoW15)
AGGATGCCCTGGGCTGGCCTGGTGAAAACATACAACAGCAACGCGCAGAC
GCCCGACTCGGCCGGCACCGCAACTGCTATGAACTCCGGGCACAAGACCA
AGTCGGTAAGAAGGTGTTTTACCTCGTAAGCATCTGGTCGTTTCCCAGTC
AAAAATAGTTTTCTGGAGGGAGAAACGAACCAGAGTAGGTATGTTGACGC
TACATGTGGGGTTTTACTGTTGTTGCTATGTACTGGCACACTGGTTATTA
ACGGGCGTTTCTTTGGGAGTATTGTCTATCCTATCAACCCAACATGTGGC
TACGATAAGGCCCTCTGGTTGATGTTGAAAATAAATCAACATCGTCATCT
TGCGTTTGGTTTGGTCCGATTGTTCAAGTGCACCCTGTGTACTCAACGTC
CACCACAGGGCGTGATCGGCGTTTCCGAGGATGTCATCCGCGGCGATTGC
TCGACTCTCCCCGGCAATGAGCTCGAGCTGATTGCTCAGCAGGCCAAGGC
GGTGAACAAGAAAATTGGTGTCGTTTCTACCGCCCGTATCACCCATGCCA
CCCCTGCTGGCGTGTACGCGCGCAGCGTCGACCGCGGCTATGAGGCCGGC
GTACCCGAGGGATGCACGGAGCAGGTCGATATCGCACAGCAGGTGTGTGA
CTTACACGTAGACAGCATCAGCACAATTGCGCAGCAGTAGCACAATCGCG
CCGTAGATGTACCAGGTATACGATGTGAAGTCGTACGTCCTAAGTTCTGA
GCACCGAGAGGAAAATAGCTACTGTAGTCTAGTACAGTGCTCTAATGTAG
GCTGCAATCATTGCAATAGGTCACACTGCAGACGGCCGCTTGTTCGGTGT
GGGATATTCAATACGCAGAACAGCAGTCGTGATTAGGCTGGAGTCCTAAA
CAAAACCACACCATCGCTTGAGAAAACACCCCAAAAAACACAACGAAAAC
AGGATACGCCAAATAAACTCGTGAGAGAAGAGTAGAACAATACAAGAAGA
GCGTGAGCTCTGCAAGAGTCCAACATTTCCTTTTTCCTTTGCTTATTCAA
CCTAACCTGAGCAGCTTCTCATGTCCATGGTGGGCGACGACGCCTGGGTC
GACTTCGCCGCGGGCGGGGGTAGGCGCAACTTCTACGATTACACCGAAGT
CGACGCCACGGGAGAGCCCGGTGACCGCATAGACGGTCGCAACCTTATCG
CCGAGGCCAATGATGCAGGCGTTATGACCGCGCAGACTAGGGATGAATTC
ATGGCCCTCGACTTTGAAGATGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18076:65..1341-

>mRNA_L-elsbetiae_contig18076.5191.1 ID=mRNA_L-elsbetiae_contig18076.5191.1|Name=mRNA_L-elsbetiae_contig18076.5191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig18076:65..1341- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCTGGGCTGGCCTGGTGAAAACATACAACAGCAACGCGCAGACGCC
CGACTCGGCCGGCACCGCAACTGCTATGAACTCCGGGCACAAGACCAAGT
CGATGCCCTGGGCTGGCCTGGTGAAAACATACAACAGCAACGCGCAGACG
CCCGACTCGGCCGGCACCGCAACTGCTATGAACTCCGGGCACAAGACCAA
GTCGGGCGTGATCGGCGTTTCCGAGGATGTCATCCGCGGCGATTGCTCGA
CTCTCCCCGGCAATGAGCTCGAGCTGATTGCTCAGCAGGCCAAGGCGGTG
AACAAGAAAATTGGTGTCGTTTCTACCGCCCGTATCACCCATGCCACCCC
TGCTGGCGTGTACGCGCGCAGCGTCGACCGCGGCTATGAGGCCGGCGTAC
CCGAGGGATGCACGGAGCAGGTCGATATCGCACAGCAGGGCGTGATCGGC
GTTTCCGAGGATGTCATCCGCGGCGATTGCTCGACTCTCCCCGGCAATGA
GCTCGAGCTGATTGCTCAGCAGGCCAAGGCGGTGAACAAGAAAATTGGTG
TCGTTTCTACCGCCCGTATCACCCATGCCACCCCTGCTGGCGTGTACGCG
CGCAGCGTCGACCGCGGCTATGAGGCCGGCGTACCCGAGGGATGCACGGA
GCAGGTCGATATCGCACAGCAGCAGCTTCTCATGTCCATGGTGGGCGACG
ACGCCTGGGTCGACTTCGCCGCGGGCGGGGGTAGGCGCAACTTCTACGAT
TACACCGAAGTCGACGCCACGGGAGAGCCCGGTGACCGCATAGACGGTCG
CAACCTTATCGCCGAGGCCAATGATGCAGGCGTTATGACCGCGCAGACTA
GGGATGAATTCATGGCCCTCGACTTTGAAGATGGGTGACAGCTTCTCATG
TCCATGGTGGGCGACGACGCCTGGGTCGACTTCGCCGCGGGCGGGGGTAG
GCGCAACTTCTACGATTACACCGAAGTCGACGCCACGGGAGAGCCCGGTG
ACCGCATAGACGGTCGCAACCTTATCGCCGAGGCCAATGATGCAGGCGTT
ATGACCGCGCAGACTAGGGATGAATTCATGGCCCTCGACTTTGAAGATGG
GTGA
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