mRNA_L-elsbetiae_contig18074.5190.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18074.5190.1
Unique NamemRNA_L-elsbetiae_contig18074.5190.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18074.5190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18074contigL-elsbetiae_contig18074:1111..2100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.8e-11
Seed eggNOG ortholog2880.D7FHY8
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K02606,ko:K09186,ko:K09188,ko:K14964,ko:K17586,ko:K22197
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04110,ko04111,ko04113,ko04934,ko05202,ko05225,map00310,map04110,map04111,map04113,map04934,map05202,map05225
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA processing
EggNOG OGsCOG2940@1,COG5141@1,KOG0825@1,KOG0825@2759,KOG0955@2759,KOG4443@2759
EC2.1.1.43
COG Functional cat.LO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03000,ko03032,ko03036
Exons2
Model size449
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.422364-CDS-L-elsbetiae_contig18074:1110..14541622815753.422364-CDS-L-elsbetiae_contig18074:1110..1454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18074 1111..1454 +
1691683080.5740025-CDS-L-elsbetiae_contig18074:1110..14541691683080.5740025-CDS-L-elsbetiae_contig18074:1110..1454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18074 1111..1454 +
1622815753.4346933-CDS-L-elsbetiae_contig18074:1995..20981622815753.4346933-CDS-L-elsbetiae_contig18074:1995..2098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18074 1996..2098 +
1691683080.5956285-CDS-L-elsbetiae_contig18074:1995..20981691683080.5956285-CDS-L-elsbetiae_contig18074:1995..2098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18074 1996..2098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18074.5190.1prot_L-elsbetiae_contig18074.5190.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18074 1111..2098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18074.5190.1

>prot_L-elsbetiae_contig18074.5190.1 ID=prot_L-elsbetiae_contig18074.5190.1|Name=mRNA_L-elsbetiae_contig18074.5190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
EGGASGGPDAPVEKSLVNWRPIAHSIAHRRLLRLVATHLLDHLRELDQFS
YFEHPRHGCSRLRGDNRVPDGLFVHPTEDGVGVVRVLGRPQVGQLLCDNA
QKFNSAESVYGIAARKILEGAEQLWPQAGRLFDGLMDIEAEAQQHGIVG
back to top

mRNA from alignment at L-elsbetiae_contig18074:1111..2100+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18074.5190.1 ID=mRNA_L-elsbetiae_contig18074.5190.1|Name=mRNA_L-elsbetiae_contig18074.5190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig18074:1111..2100+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGGTGGCGCGAGCGGCGGTCCCGATGCCCCGGTGGAAAAATCCCTGGT
GAACTGGCGACCGATCGCACACTCGATCGCACACCGTCGCCTGCTGCGCC
TGGTGGCGACGCACTTGCTGGACCATCTACGGGAGCTGGATCAGTTCAGC
TACTTCGAGCACCCCCGTCACGGATGTTCTCGGTTACGAGGAGATAATCG
AGTCCCCGATGGACTTTTCGTCCATCCGACGGAAGATGGTGTCGGGGTCG
TACGGGTCCTTGGGCGACCTCAAGTTGGACAACTGCTGTGCGATAACGCA
CAAAAGTTTAACTCCGCCGAAAGTGTCTACGGCATCGCGGCCAGGTATGT
GATGGGGACGGAAGATGCGCTGTGATACGACGTGGCGAGATTTTTTTTTG
GTAGGAAGGAGGCTGTTTCCGCCCGGGCCGAAGTTAAGCAGTTTTCATGT
TGTCTGTTGGTTGGCACCGGTAGCACTCAAAATAGCGGCCTCGCCGCTTT
GTTTCACCGAATGAAAAAGAGGCAGAGGTTTTCGAGGTGATGCCAGTCAA
CGAACACCCTAAGCGGTGGGTGGCTCGGCTGTCAGAATACCAGAGGTGAA
ACTCGCAGCTCGTACTGCTGTGTGGCAGGCCCAGGCGAGGCGGTGTGGTT
GAGCCTCCTGCTCACCCCTTGTCCCAGCTCACACGGGACTTTGTTTTGCA
TACTCGAAAAGGCATGTCTTCTCTCGCCCCCTCTCCGCCAATAATTCCTT
CATTCTTAAACTCTACATACGACTTTACCTTATGCTCGCACGCCCCCCTC
CCCCCTTCCCCCCACACCCCTCTCCCCCGTGCATCCTTTCCTCCGCCGCC
TCCAATATAAACCCCAACGAACGTTCGAAACCCAGGAAAATTCTGGAGGG
AGCAGAGCAGCTCTGGCCCCAGGCGGGGAGACTCTTCGATGGCCTGATGG
ACATCGAAGCTGAGGCGCAGCAGCACGGCATTGTCGGACC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18074:1111..2100+

>mRNA_L-elsbetiae_contig18074.5190.1 ID=mRNA_L-elsbetiae_contig18074.5190.1|Name=mRNA_L-elsbetiae_contig18074.5190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig18074:1111..2100+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGGTGGCGCGAGCGGCGGTCCCGATGCCCCGGTGGAAAAATCCCTGGT
GAACTGGCGACCGATCGCACACTCGATCGCACACCGTCGCCTGCTGCGCC
TGGTGGCGACGCACTTGCTGGACCATCTACGGGAGCTGGATCAGTTCAGC
TACTTCGAGCACCCCCGTCACGGATGTTCTCGGTTACGAGGAGATAATCG
AGTCCCCGATGGACTTTTCGTCCATCCGACGGAAGATGGTGTCGGGGTCG
TACGGGTCCTTGGGCGACCTCAAGTTGGACAACTGCTGTGCGATAACGCA
CAAAAGTTTAACTCCGCCGAAAGTGTCTACGGCATCGCGGCCAGGAAGGT
GGCGCGAGCGGCGGTCCCGATGCCCCGGTGGAAAAATCCCTGGTGAACTG
GCGACCGATCGCACACTCGATCGCACACCGTCGCCTGCTGCGCCTGGTGG
CGACGCACTTGCTGGACCATCTACGGGAGCTGGATCAGTTCAGCTACTTC
GAGCACCCCCGTCACGGATGTTCTCGGTTACGAGGAGATAATCGAGTCCC
CGATGGACTTTTCGTCCATCCGACGGAAGATGGTGTCGGGGTCGTACGGG
TCCTTGGGCGACCTCAAGTTGGACAACTGCTGTGCGATAACGCACAAAAG
TTTAACTCCGCCGAAAGTGTCTACGGCATCGCGGCCAGGAAAATTCTGGA
GGGAGCAGAGCAGCTCTGGCCCCAGGCGGGGAGACTCTTCGATGGCCTGA
TGGACATCGAAGCTGAGGCGCAGCAGCACGGCATTGTCGGAGAAAATTCT
GGAGGGAGCAGAGCAGCTCTGGCCCCAGGCGGGGAGACTCTTCGATGGCC
TGATGGACATCGAAGCTGAGGCGCAGCAGCACGGCATTGTCGGA
back to top