|
Homology
BLAST of mRNA_L-elsbetiae_contig1807.5189.1 vs. uniprot
Match: A0A6H5KY95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY95_9PHAE) HSP 1 Score: 265 bits (678), Expect = 1.010e-78 Identity = 188/276 (68.12%), Postives = 204/276 (73.91%), Query Frame = 1
Query: 1 MKPSASLIGLASVAAYLVLGTHGFVAP-GSLTAGGVISRTHDVSSSIISCGRGSRSVFPASDHASPRHRNEHSSLTMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAG------QLGDVLEGDRGVEELFSDDWSDMPANTGMVKSNVPLPDITEFKPTRRAETTLEQREKKTARGLVVGAAD----DAVPASRLSGFKSKLPPIVDREEERRKKSAAERFEEGPIVKGLKTLTWFSICTLVLWEVYINSPWFTPPTGPPVL 795
MKPSASL+ LASVA L+ GTHGFVAP +L AGGV S THDV SS R S S H S R XXXXXXXXXXXXXXXXXXXXXXXXXXXXX AG +LGDVLEGDR VE LF+DDWS MPANTGM KSNVPLPDI+EFKP+RRAE+TLEQREKK+A GLVVGA D DAVPASRL+GF+SKL PIVDREEERR+K+AAERFEEGPIV+GLKT TWFSICTLVLWE+YINSPWF P PP +
Sbjct: 26 MKPSASLLALASVATCLLEGTHGFVAPINNLAAGGVTSGTHDVCSSAAIYSRSSGSSHRHLLHRSSRRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPPKRPAADSGAGAGAEGGVGELGDVLEGDRSVEALFTDDWSGMPANTGMTKSNVPLPDISEFKPSRRAESTLEQREKKSAVGLVVGAGDGDDDDAVPASRLAGFESKLTPIVDREEERRQKNAAERFEEGPIVRGLKTATWFSICTLVLWEIYINSPWFHAPESPPPI 301
BLAST of mRNA_L-elsbetiae_contig1807.5189.1 vs. uniprot
Match: D8LB46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB46_ECTSI) HSP 1 Score: 236 bits (602), Expect = 4.830e-69 Identity = 120/151 (79.47%), Postives = 130/151 (86.09%), Query Frame = 1
Query: 361 GQLGDVLEGDRGVEELFSDDWSDMPANTGMVKSNVPLPDITEFKPTRRAETTLEQREKKTARGLVVGAAD------DAVPASRLSGFKSKLPPIVDREEERRKKSAAERFEEGPIVKGLKTLTWFSICTLVLWEVYINSPWFTPPTGPPVL 795
G+LGDVLEGDR VE LFSDDWS MPANTGM KSNVPLPDI+EFKP+RRAE+TLEQREKK+A GLVVG D DAVPASRL+GF+SKL PIVDREEE RKK+AAERFEEGPIV+GLKT TWFSICTLVLWEVYINSPWF P PP +
Sbjct: 58 GELGDVLEGDRSVEALFSDDWSGMPANTGMTKSNVPLPDISEFKPSRRAESTLEQREKKSAVGLVVGPGDGSDDDGDAVPASRLAGFESKLTPIVDREEEWRKKNAAERFEEGPIVRGLKTATWFSICTLVLWEVYINSPWFHAPESPPPM 208
BLAST of mRNA_L-elsbetiae_contig1807.5189.1 vs. uniprot
Match: A0A835YVC2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC2_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.550e-12 Identity = 46/127 (36.22%), Postives = 67/127 (52.76%), Query Frame = 1
Query: 397 VEELFSDDWSDMPANTGMVKSNVPLPDITEFKPTRRAETTLEQREKKTARGLVVGAADDAVPASRLSGFKSKLPPIVDREEERRKKSAAERFEEGPIVKGLKTLTWFSICTLVLWEVYINSPWFTPP 777
+ +LF DDWS M A GM D E P++ +T L +K F+S+L PI + E R+ +AAERF+EG +VK +K TWF++ +LV WE+Y++SP+F PP
Sbjct: 75 LADLFVDDWSGMQAPRGMKDKK----DAKEPLPSKDGKTELPDLKK----------------------FESQLTPISGMKPEVRELTAAERFQEGNVVKAIKAATWFALLSLVAWEIYLHSPFFKPP 175
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-27_005260.1 |
Exons | 2 |
Model size | 2461 |
Cds size | 798 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815753.360114-UTR-L-elsbetiae_contig1807:9589..11252 | 1622815753.360114-UTR-L-elsbetiae_contig1807:9589..11252 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1807 9590..11252 - |
1691683080.533655-UTR-L-elsbetiae_contig1807:9589..11252 | 1691683080.533655-UTR-L-elsbetiae_contig1807:9589..11252 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1807 9590..11252 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815753.370872-CDS-L-elsbetiae_contig1807:11252..11588 | 1622815753.370872-CDS-L-elsbetiae_contig1807:11252..11588 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1807 11253..11588 - |
1691683080.5451734-CDS-L-elsbetiae_contig1807:11252..11588 | 1691683080.5451734-CDS-L-elsbetiae_contig1807:11252..11588 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1807 11253..11588 - |
1622815753.383158-CDS-L-elsbetiae_contig1807:14386..14848 | 1622815753.383158-CDS-L-elsbetiae_contig1807:14386..14848 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1807 14387..14848 - |
1691683080.5560663-CDS-L-elsbetiae_contig1807:14386..14848 | 1691683080.5560663-CDS-L-elsbetiae_contig1807:14386..14848 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1807 14387..14848 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1807.5189.1 >prot_L-elsbetiae_contig1807.5189.1 ID=prot_L-elsbetiae_contig1807.5189.1|Name=mRNA_L-elsbetiae_contig1807.5189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=266bp
MKPSASLIGLASVAAYLVLGTHGFVAPGSLTAGGVISRTHDVSSSIISCG RGSRSVFPASDHASPRHRNEHSSLTMMAAGKKRRRRKGGKGSATAAASGV STAPKKQPASAAPVVAGGGAGQLGDVLEGDRGVEELFSDDWSDMPANTGM VKSNVPLPDITEFKPTRRAETTLEQREKKTARGLVVGAADDAVPASRLSG FKSKLPPIVDREEERRKKSAAERFEEGPIVKGLKTLTWFSICTLVLWEVY INSPWFTPPTGPPVL* back to topmRNA from alignment at L-elsbetiae_contig1807:9590..14848- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1807.5189.1 ID=mRNA_L-elsbetiae_contig1807.5189.1|Name=mRNA_L-elsbetiae_contig1807.5189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5259bp|location=Sequence derived from alignment at L-elsbetiae_contig1807:9590..14848- (Laminarionema elsbetiae ELsaHSoW15) ATGAAGCCCTCCGCGTCCCTCATCGGTCTTGCTAGCGTTGCGGCCTACCT
CGTCCTGGGCACGCATGGTTTCGTTGCGCCGGGCAGCTTGACCGCCGGCG
GCGTGATCTCCAGGACACATGATGTTTCGTCCAGCATCATCTCCTGCGGG
CGCGGTAGCCGCTCCGTGTTCCCGGCCAGCGACCACGCCTCTCCACGGCA
CCGGAACGAGCATTCATCGCTGACGATGATGGCAGCAGGCAAGAAGCGCA
GACGGCGGAAAGGAGGCAAAGGTAGTGCCACAGCGGCTGCTTCTGGCGTG
TCGACCGCGCCCAAGAAGCAGCCCGCCAGCGCTGCCCCGGTTGTTGCCGG
GGGCGGAGCGGGCCAGCTCGGAGACGTGCTGGAGGGGGATAGAGGGGTCG
AGGAACTGTTTTCAGACGACTGGTCGGATATGCCCGCCAACACTGGAATG
GTCAAGTCCAACGTGAGCTCCCTCTGTTGTCCTGGTAGGCACAGATACTA
TTTATGTAGGCCTGCTCCACAGCAGGAGTGCAAGTTTGGGTTACATAGGG
TCACAGCAGCACACATACCTACAAGCCGATGAGGCGTGTGCAAACATGTG
CGCATCGCGACGACAGTGTGCTTGAGGAAGGCTCGTGAGCCTCTACTGTT
TTCGTTGCCAATCTGTCGTTGTCTGTCGAAAGTCAACAAAAAATCAGCAA
CAATTAGTCTACGTTTGTAGAAAGTTGAAGTTGTCTTGCCTCACTGAGGA
GCTTGGTTGTGAACTGGACGCACATTCATCAGCAGTGACATGTGAAACCG
TTTTCAAGGAGACACATAAATGATGTATTTCTTGATAAGTGCTCGCCGCC
CGAGTCCAGATTTTTTAATGAACCAGGCTCACTCCTTTAGCTCTCGTATG
TGTCGAGGGTGGAGCACGAAGAACGAAGCGAATTGATGCTCTAAATAGTC
GCGGAGTACGAACGATTTAGGGCGACCCAAAACTACGCCGGTCTGGACTT
CGTAACCAATACGCGCATACAAGACCCCCCTTCCCCAAAAGCCCTCGCCC
TCTGGAGGCACGCTCACACCAATGCGCCGGCCCTAGGAGCTCACATCCTT
CATCCCAGACGAAACTAACCGCATCTAGAGGTGCGATCTACTGCTCATAG
CTAGCGGGGGTGCGGCGTTTAGACCCTGAATCGCTCCGCGAGCATCAGAT
CAGAGCTGCCTTCGAACACACTTTGAGGGGTTCGGCCAGACCACCAGCAG
AAGCAACAAGCAGCTGCAGTTTGTGTCCTGCAACTAGTTAGGTACCGTCA
GGGGGCGCTCTGCACACCTGAGACTCTACTGCCGATGTGCGTGGTCTCCT
GGTGGATTATCACCTCTGTTTTGGGTCAAAATTGCCTCAAAATGGGCGCG
TTGTGTGTGCGAACTGGCTCTCTCCTCTCTCTTTTCTCCATACAGATCCC
CCGTAGCACACTTGAGATGCCGAGAGTTAGTGCCATGCAAATACTGGCGC
CTAGACTTTTGGTTATCTATGCACCAAGGTACCTTATCTACGCATGCCCT
AACTCCCAGCCTGGATTTAACTCCTCTTCGCCGAGCTTTCAACCTCTCCG
TGTCTACCAATACTCAGGCTCTATGATCTGGCCGTACCAGAAATGTGCCT
CCTTCAAAATCACGGGCGCATGTGCCTCCTTATAAAGGATTTCGCATACC
ACTGTTAGATGAGGTTTTGGCCTTCGCCTTGTCCAGCACTAGACAGCTAG
ACAGGGGTATATTAAATAGAAGTAGTTTTCAAGGGAGCGCATGTGCGGGA
GGGGTTTTTAGGGAGGGACTTCCTGGGACGTAAAAAAACACCAGAGCCTC
AGTGCAGGCAGAGATGGAGAGTTCGAAAGCCGAAAGCTCAGCTATGTAGG
AGGAAATAATCCAAGCCAGGAGTCAGAGGACGTGTGGATAAGGTCCTTGG
CTGCATAGTGGGACAAAACGATTGGGCGCCAATCTGTGCAGGGCACTGAT
TCTCAGCGTCGCTTGGCATTCGTACTGAATTAAAAGAGCTCGGCCGAGAG
AGAGAGAGAGTCAGTCCGTCGATCCACAGCACGATTTGAGGTGATTTGGG
GGCAGAATCAGACATTAATAATCCACGAGGAAACCACGCGCATCGGAAAA
CATACGGTCCCAGGATGTCCAGAACACTCGATGATGCCGAAAACCGTAAT
GCAGGGCACTAACTACAGCTGCTGCTGTCTACCGGGGCTGGCCTCGCCGA
GCCCCTCCGTGCGTGTTCGAAGGCAGCTCTGATTTGACGCTCACAGAGCG
ATTCGGGATCTGAAATCCGCAGCGACGCTAGCTATGAGTAGATCTCCTTC
CCTATAGTTTGTTTCGTCTGGGATGGGGAGTGTGAGCTCCTGGGGCTGGC
GCACTGGTGGGGGCGTGTGCCTCGACAGGGCGGGGCTTTTGGTATGGGGG
TCTTTTTTTTTGCCTTGTTTTCGTCTGCGAGGCCCCCCGCACAGTTTGTG
ATGCCCTAAATCATTCGTACTCCCGCCACTGGAGCATAAATTCGCTTCGT
TCTTCGTGCTCCACCCTCGAGACATGCCAGAAATAGGACTGAGCTTGCTT
CACCACAAAATCTGGACTTACAATAGCGGCGAGCACTTATCAAGAAATAG
CTCATTTCTTCGCCTCCTTGAAAACGATTTCACATACCACGGTAGACTGT
AACATTGTTACCCCTGTGCAATATATTCAGCAACATGTACACGACAAGAA
ACCGCACAAGGATTGCGGCCACGTCGTTTCCTCATAGGAGTACTCTGTAC
TTGGTGATGGTTATCCAGTTCATCAACACCTACACGTCTAGTCTACAGCT
AGCACGCATGTTGTAAATACTGCTGTAGGTCTACATATGTACCCCTTTTT
CTCGCTCTCTCCGCATAGATGCAGGTGAACACCTACACGTCTAGTCTACA
GCAGTAGCACGCATGTTGTAAATACTGCTGTAGATCTACATATGTACCCC
TCTTTCTCGCTCTCTCCGCGGGCTCGCGTTTGCCGTGTGATCCCTCAGAT
TCGCGCGCCTTCTCTTCCCGCCTCTCGCACCCGGCTCGCTCTGACCCTAA
CGCCTCTTTTCAGAAGGAAAAAACAGTTAGAAAATCAAGAATGGAACCTT
AACCCACATTGACACGGGACTCCGTGAGATTCGATCGGTATGTAATCCTA
CCATTACTCCTGTAGTGACGTAGCATTGGGCCGGCCGATTTTCATCATCT
TCCCCCGCAGGTCCCGCTCCCCGACATCACGGAGTTCAAGCCCACCAGAC
GGGCGGAGACCACCCTCGAGCAGCGCGAGAAGAAGACCGCCCGGGGGCTC
GTCGTCGGCGCGGCCGACGACGCCGTACCCGCGAGCCGCCTGAGCGGGTT
CAAGTCCAAGCTGCCCCCGATCGTGGACCGCGAGGAGGAGCGGCGGAAGA
AGAGCGCGGCGGAGCGGTTCGAGGAGGGGCCGATCGTGAAGGGCCTCAAG
ACCCTCACGTGGTTCAGCATCTGCACGCTCGTGCTCTGGGAGGTTTACAT
CAACTCGCCCTGGTTCACGCCGCCCACGGGCCCTCCGGTGTTGTAGACAA
CGTGCTCTCCGGGCTCTCCGGGTCCCGCCCTCTTCTCGACAACCCCCCAG
CCGCGCCCCCCGGAGTTCCGGCGTATTTGTTGGCTTTTTTTTTTTGCTCC
CCGAGAAGTTGGTGTTGCACAGCAGCAGCCGTATATACGCAGCAGTTGGA
ACGCGTACATGCACAGGAGTTAGAGAGAGAGAGAGAGAGAAAAGGTGCCT
GCAGTTTTCTGATTGGCCAATCTTTTTGAAAGGAAATTTCCTGTGGTCGA
AAGTTATTCCATGGTCGGCCGATGACGTCAGCCACGGTCATGACGTCATC
TCTTGAAAAAAAAAAAAACGATTCACGTTGTGTGGTGGGTGAATGATTGG
ACTGACTGATGGTAGCATCATTATCAATCAGTCACTCGCATAAACCGCCG
ACCACACTCTCTTGTGGTGATTTTGACGGGGGCTTGTTCTGCTGTCGTGG
GCGTCACTCGTCCGAGTCCAGGTTCCAAGAGATAGAGATAGAGATCTAGC
CGCCTGGAGTTCGGCTTTCGTGCCCCCGCTAAACCGCCGTTTTTACTTGC
TTCTTGGCTGCCCGCGAATCACCGCCCCGGGGAAGGGGAGCGGTTTTGTG
TTTTCTCGTGTCCCAGACAAACACCCGAACTCTGATTGATTGTACAGTAA
ATACGTAGTTTTTTTTCGTCTCTTTTGGCAGAAGTGAGCAAGCAGGGTGT
TGTCCGAGGTAAACGTAGATTTGACAGGCTACGCGCGCACGGGCTTCTGG
GTCGCGAAAACGAGCTGCAAATGCGACCGGTTCGGTCTTCTTGCTCGTTG
TATCGTGCGGCTCATTTGCGAACAGAAGTGCGGCGCTTTGCGTTGTTGTT
TTTCCTTGTAAAAGGCTACTTTTTTTTTTCTGGTTGGTGAAGACATTGGC
TTTCGTCTGAGTTGTGGAGCCTAAAGGCTATCGTATGTGTTTATAGCGTA
TGGTTACGCTTGCTTGGCTTAGCGTAAATGCATGTCTTCGATGCTCGCGT
ACCAGGTATCAAAATTGCTGATCCGAAGAAACTCGCTGAAACATCGAATC
TGTGCGTCATTGGTTCAGGTTGTGCATCGTTCCCTTGAACAAAACGAATC
GGAGCGATCACAAATCAAGGTGTTGACAGGCGTATGAGGGCGGTGACTGG
CACTCAGCGCGAAAAGCCATCCATACTTACCGTAGATGACGCCAGATACC
ACACCCCCTGGACTGTCAACGTTTCGGGGGGACTGTCAGCGGGACTGTCA
AGTATTTACCGTAGATGACGCAAGATACCACACCCCTTGGACAGATTTTC
AAAGCTCGATTCCTCACCAGCAAGGACAGTAGTGAGTGCCAGAGTGCCGA
AAGGGGGTGGCGTTGGAACTATCTAGTCGAGGGCTGTCCGAAAACGTGTC
GTTTGGTGCTGGCACCCTCTTCGTTGCGGAGTAGTGGAGCTCTAAAATTC
GGTCCAGGGGGTGTGCTATCTTGTGTCACCTAAGGTATGCATGAAGCCGG
TTTTCCCTGAGCACCATACTTGCACAACGCACGGAAAGAGGAAAGAGGTG
TTTCGGGGTAATACGTGCCGGTGGTCTAGTTGGTATCCCCTAACACCTTC
TAGCAGGCAGGTCACGGGTTCGATCCCGGACGGGAGCGACTTTTTCTCGC
TAAATATAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1807:9590..14848- >mRNA_L-elsbetiae_contig1807.5189.1 ID=mRNA_L-elsbetiae_contig1807.5189.1|Name=mRNA_L-elsbetiae_contig1807.5189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1596bp|location=Sequence derived from alignment at L-elsbetiae_contig1807:9590..14848- (Laminarionema elsbetiae ELsaHSoW15) ATGAAGCCCTCCGCGTCCCTCATCGGTCTTGCTAGCGTTGCGGCCTACCT CGTCCTGGGCACGCATGGTTTCGTTGCGCCGGGCAGCTTGACCGCCGGCG GCGTGATCTCCAGGACACATGATGTTTCGTCCAGCATCATCTCCTGCGGG CGCGGTAGCCGCTCCGTGTTCCCGGCCAGCGACCACGCCTCTCCACGGCA CCGGAACGAGCATTCATCGCTGACGATGATGGCAGCAGGCAAGAAGCGCA GACGGCGGAAAGGAGGCAAAGGTAGTGCCACAGCGGCTGCTTCTGGCGTG TCGACCGCGCCCAAGAAGCAGCCCGCCAGCGCTGCCCCGGTTGTTGCCGG GGGCGGAGCGGGCCAGCTCGGAGACGTGCTGGAGGGGGATAGAGGGGTCG AGGAACTGTTTTCAGACGACTGGTCGGATATGCCCGCCAACACTGGAATG GTCAAGTCCAACATGAAGCCCTCCGCGTCCCTCATCGGTCTTGCTAGCGT TGCGGCCTACCTCGTCCTGGGCACGCATGGTTTCGTTGCGCCGGGCAGCT TGACCGCCGGCGGCGTGATCTCCAGGACACATGATGTTTCGTCCAGCATC ATCTCCTGCGGGCGCGGTAGCCGCTCCGTGTTCCCGGCCAGCGACCACGC CTCTCCACGGCACCGGAACGAGCATTCATCGCTGACGATGATGGCAGCAG GCAAGAAGCGCAGACGGCGGAAAGGAGGCAAAGGTAGTGCCACAGCGGCT GCTTCTGGCGTGTCGACCGCGCCCAAGAAGCAGCCCGCCAGCGCTGCCCC GGTTGTTGCCGGGGGCGGAGCGGGCCAGCTCGGAGACGTGCTGGAGGGGG ATAGAGGGGTCGAGGAACTGTTTTCAGACGACTGGTCGGATATGCCCGCC AACACTGGAATGGTCAAGTCCAACGTCCCGCTCCCCGACATCACGGAGTT CAAGCCCACCAGACGGGCGGAGACCACCCTCGAGCAGCGCGAGAAGAAGA CCGCCCGGGGGCTCGTCGTCGGCGCGGCCGACGACGCCGTACCCGCGAGC CGCCTGAGCGGGTTCAAGTCCAAGCTGCCCCCGATCGTGGACCGCGAGGA GGAGCGGCGGAAGAAGAGCGCGGCGGAGCGGTTCGAGGAGGGGCCGATCG TGAAGGGCCTCAAGACCCTCACGTGGTTCAGCATCTGCACGCTCGTGCTC TGGGAGGTTTACATCAACTCGCCCTGGTTCACGCCGCCCACGGGCCCTCC GGTGTTGTAGGTCCCGCTCCCCGACATCACGGAGTTCAAGCCCACCAGAC GGGCGGAGACCACCCTCGAGCAGCGCGAGAAGAAGACCGCCCGGGGGCTC GTCGTCGGCGCGGCCGACGACGCCGTACCCGCGAGCCGCCTGAGCGGGTT CAAGTCCAAGCTGCCCCCGATCGTGGACCGCGAGGAGGAGCGGCGGAAGA AGAGCGCGGCGGAGCGGTTCGAGGAGGGGCCGATCGTGAAGGGCCTCAAG ACCCTCACGTGGTTCAGCATCTGCACGCTCGTGCTCTGGGAGGTTTACAT CAACTCGCCCTGGTTCACGCCGCCCACGGGCCCTCCGGTGTTGTAG back to top
|